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Conserved domains on  [gi|20087049|ref|NP_613269|]
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movement protein [Cowpea mottle virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tombus_movement super family cl05068
Tombusvirus movement protein; This family consists of several Tombusvirus movement proteins. ...
 1-68 3.99e-03

Tombusvirus movement protein; This family consists of several Tombusvirus movement proteins. These proteins allow the virus to move from cell-to-cell and allow host-specific systemic spread.


The actual alignment was detected with superfamily member pfam05318:

Pssm-ID: 253150  Cd Length: 68  Bit Score: 32.19  E-value: 3.99e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 20087049    1 MDQTTEVRGRSRSRQRSGSSDSRKPKNNKQVQVASEAVQRRNDKPlRGHHGGDFVIVAHTVTLNINFN 68
Cdd:pfam05318  1 MDSQQESDSTVEPRTGKKKRAGKRGKQKAKRSVASDAVRKARPSG-SAVNGGNWVYVADKVEVTINFN 67
 
Name Accession Description Interval E-value
Tombus_movement pfam05318
Tombusvirus movement protein; This family consists of several Tombusvirus movement proteins. ...
 1-68 3.99e-03

Tombusvirus movement protein; This family consists of several Tombusvirus movement proteins. These proteins allow the virus to move from cell-to-cell and allow host-specific systemic spread.


Pssm-ID: 253150  Cd Length: 68  Bit Score: 32.19  E-value: 3.99e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 20087049    1 MDQTTEVRGRSRSRQRSGSSDSRKPKNNKQVQVASEAVQRRNDKPlRGHHGGDFVIVAHTVTLNINFN 68
Cdd:pfam05318  1 MDSQQESDSTVEPRTGKKKRAGKRGKQKAKRSVASDAVRKARPSG-SAVNGGNWVYVADKVEVTINFN 67
 
Name Accession Description Interval E-value
Tombus_movement pfam05318
Tombusvirus movement protein; This family consists of several Tombusvirus movement proteins. ...
 1-68 3.99e-03

Tombusvirus movement protein; This family consists of several Tombusvirus movement proteins. These proteins allow the virus to move from cell-to-cell and allow host-specific systemic spread.


Pssm-ID: 253150  Cd Length: 68  Bit Score: 32.19  E-value: 3.99e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 20087049    1 MDQTTEVRGRSRSRQRSGSSDSRKPKNNKQVQVASEAVQRRNDKPlRGHHGGDFVIVAHTVTLNINFN 68
Cdd:pfam05318  1 MDSQQESDSTVEPRTGKKKRAGKRGKQKAKRSVASDAVRKARPSG-SAVNGGNWVYVADKVEVTINFN 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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