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Conserved domains on  [gi|2007099785|gb|QTA55501|]
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cytochrome c oxidase subunit I, partial [Siciliaria calcarae calcarae]

Protein Classification

heme-copper oxidase family protein( domain architecture ID 14)

heme-copper oxidase family protein may catalyze the transfer of electrons from an electron donor onto molecular oxygen

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Heme_Cu_Oxidase_I super family cl00275
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-202 4.52e-126

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


The actual alignment was detected with superfamily member MTH00153:

Pssm-ID: 469701  Cd Length: 511  Bit Score: 364.96  E-value: 4.52e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGTLT-DDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00153   21 GAWSGMVGTSLSLLIRAELGQPGSLIgDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSF 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00153  101 WLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGMTLDRMP 180

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00153  181 LFVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGG 223
 
Name Accession Description Interval E-value
COX1 MTH00153
cytochrome c oxidase subunit I; Provisional
 1-202 4.52e-126

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177210  Cd Length: 511  Bit Score: 364.96  E-value: 4.52e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGTLT-DDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00153   21 GAWSGMVGTSLSLLIRAELGQPGSLIgDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSF 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00153  101 WLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGMTLDRMP 180

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00153  181 LFVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGG 223
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-202 2.20e-120

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 349.47  E-value: 2.20e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGT-LTDDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:cd01663    14 GLWSGLVGTSLSLLIRLELSQPGSqLGNDQLYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNLSF 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:cd01663    94 WLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAPGMTLEKMP 173

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:cd01663   174 LFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 216
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
6-202 1.93e-62

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 202.28  E-value: 1.93e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   6 MVGTGLSLLIRLELGTSG-TLTDDHFFNVVVTAHAFVMIFFMVMPvMIGGFGNWMVPLLIGAPDMSFPRMNNMSFWLLPP 84
Cdd:COG0843    31 LIGGLLALLMRLQLAGPGlGLLSPETYNQLFTMHGTIMIFFFATP-FLAGFGNYLVPLQIGARDMAFPRLNALSFWLYLF 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  85 SFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVSLFVWS 164
Cdd:COG0843   110 GGLLLLISLFVGGAADVGWTFYPPLSGLEASPGVGVDLWLLGLALFGVGSILGGVNFIVTILKMRAPGMTLMRMPLFTWA 189

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2007099785 165 ILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:COG0843   190 ALVTSILILLAFPVLAAALLLLLLDRSLGTHFFDPAGG 227
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 1-200 2.76e-38

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 136.55  E-value: 2.76e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSG-TLTDDHFFNVVVTAHAFVMIFFMVMPvMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:pfam00115  10 ALVWFLVGGLLGLLIRLQLAFPGlNFLSPLTYNQLRTLHGNLMIFWFATP-FLFGFGNYLVPLMIGARDMAFPRLNALSF 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSlveGGAGTGWTVYPPLsaslahsgAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMeRVS 159
Cdd:pfam00115  89 WLVVLGAVLLLASF---GGATTGWTEYPPL--------VGVDLWYIGLLLAGVSSLLGAINFIVTILKRRAPGMTL-RMP 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPA 200
Cdd:pfam00115 157 LFVWAILATAILILLAFPVLAAALLLLLLDRSLGAGGGDPL 197
QoxB TIGR02882
cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type ...
 12-202 3.73e-30

cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]


Pssm-ID: 131928  Cd Length: 643  Bit Score: 116.11  E-value: 3.73e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  12 SLLIRLELGT-SGTLTDDHFFNVVVTAHAFVMIFFMVMPVMIGgFGNWMVPLLIGAPDMSFPRMNNMSFWLLPPSFTLLI 90
Cdd:TIGR02882  72 ALLMRAQLTVpDNKFLDAQHYNEIFTTHGVIMIIFMAMPFIIG-LMNIVVPLQIGARDVAFPVLNALSFWLFFAGAMLFN 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  91 CSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVSLFVWSILVTVF 170
Cdd:TIGR02882 151 ISFVIGGSPDAGWTNYAPLAGPEFSPGVGVNYYLIALQISGIGTLMTGINFFVTILKMRAPGMKLMQMPMFTWTTLITTL 230

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2007099785 171 LLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:TIGR02882 231 IIIFAFPVLTVALALMTTDRIFDTAFFTVAHG 262
 
Name Accession Description Interval E-value
COX1 MTH00153
cytochrome c oxidase subunit I; Provisional
 1-202 4.52e-126

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177210  Cd Length: 511  Bit Score: 364.96  E-value: 4.52e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGTLT-DDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00153   21 GAWSGMVGTSLSLLIRAELGQPGSLIgDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSF 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00153  101 WLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGMTLDRMP 180

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00153  181 LFVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGG 223
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-202 2.20e-120

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 349.47  E-value: 2.20e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGT-LTDDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:cd01663    14 GLWSGLVGTSLSLLIRLELSQPGSqLGNDQLYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNLSF 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:cd01663    94 WLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAPGMTLEKMP 173

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:cd01663   174 LFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 216
COX1 MTH00223
cytochrome c oxidase subunit I; Provisional
 1-202 4.19e-120

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177260  Cd Length: 512  Bit Score: 349.66  E-value: 4.19e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGT-LTDDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00223   20 GMWSGLVGTSLSLLIRAELGQPGAlLGDDQLYNVIVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNNMSF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00223  100 WLLPPSLYLLLSSSAVESGVGTGWTVYPPLSSNLAHAGPSVDLAIFSLHLAGVSSILGAINFITTIINMRSPGMQLERLP 179

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00223  180 LFVWSVKVTAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 222
COX1 MTH00167
cytochrome c oxidase subunit I; Provisional
 1-202 2.18e-112

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177222  Cd Length: 512  Bit Score: 330.10  E-value: 2.18e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGTLT-DDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00167   23 GAWAGMVGTALSLLIRAELSQPGSLLgDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSF 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00167  103 WLLPPSLLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGSINFITTIINMKPPGITQYQTP 182

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00167  183 LFVWSILVTTILLLLSLPVLAAAITMLLTDRNLNTTFFDPAGG 225
COX1 MTH00142
cytochrome c oxidase subunit I; Provisional
 1-202 1.52e-107

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214431  Cd Length: 511  Bit Score: 317.82  E-value: 1.52e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGTLT-DDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00142   21 GAWAGMVGTGLSLLIRAELGQPGSLLgDDQLYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMLGAPDMAFPRMNNMSF 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00142  101 WLLPPALLLLLSSAAVESGAGTGWTVYPPLSSNLAHSGGSVDLAIFSLHLAGVSSILGAINFITTVINMRAGGMKFERVP 180

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00142  181 LFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 223
COX1 MTH00116
cytochrome c oxidase subunit I; Provisional
 1-202 3.50e-105

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177177  Cd Length: 515  Bit Score: 312.03  E-value: 3.50e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGT-LTDDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00116   23 GAWAGMVGTALSLLIRAELGQPGTlLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSF 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00116  103 WLLPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGAINFITTCINMKPPAMSQYQTP 182

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00116  183 LFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGG 225
COX1 MTH00184
cytochrome c oxidase subunit I; Provisional
 1-202 1.23e-95

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177235  Cd Length: 519  Bit Score: 287.49  E-value: 1.23e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGT-LTDDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00184   25 GAFAGMIGTAFSMLIRLELSAPGSmLGDDHLYNVIVTAHAFVMIFFLVMPVMIGGFGNWFVPLYIGAPDMAFPRLNNISF 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00184  105 WLLPPALTLLLGSAFVEQGAGTGWTVYPPLSSIQAHSGGSVDMAIFSLHLAGISSILGAMNFITTIFNMRAPGITMDRMP 184

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00184  185 LFVWSILVTTFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGG 227
COX1 MTH00103
cytochrome c oxidase subunit I; Validated
 1-202 3.15e-95

cytochrome c oxidase subunit I; Validated


Pssm-ID: 177165  Cd Length: 513  Bit Score: 286.39  E-value: 3.15e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGTLT-DDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00103   23 GAWAGMVGTALSLLIRAELGQPGTLLgDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSF 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00103  103 WLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTP 182

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00103  183 LFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGG 225
COX1 MTH00182
cytochrome c oxidase subunit I; Provisional
 1-202 3.71e-95

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214451  Cd Length: 525  Bit Score: 286.33  E-value: 3.71e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGT-LTDDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00182   25 GAGAGMIGTAFSMLIRLELSAPGAmLGDDHLYNVIVTAHAFIMIFFLVMPVMIGGFGNWLVPLYIGAPDMAFPRLNNISF 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00182  105 WLLPPALILLLGSAFVEQGAGTGWTVYPPLSSIQAHSGGAVDMAIFSLHLAGVSSILGAINFITTIFNMRAPGVTFNRLP 184

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00182  185 LFVWSILITAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGG 227
COX1 MTH00183
cytochrome c oxidase subunit I; Provisional
 1-202 8.52e-95

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177234  Cd Length: 516  Bit Score: 285.28  E-value: 8.52e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGTLT-DDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00183   23 GAWAGMVGTALSLLIRAELSQPGALLgDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSF 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00183  103 WLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAISQYQTP 182

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00183  183 LFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGG 225
COX1 MTH00037
cytochrome c oxidase subunit I; Provisional
 1-202 2.37e-94

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177112  Cd Length: 517  Bit Score: 284.03  E-value: 2.37e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGTL-TDDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00037   23 GAWAGMVGTAMSVIIRTELAQPGSLlQDDQIYNVIVTAHALVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSF 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00037  103 WLIPPSFLLLLASAGVESGAGTGWTIYPPLSSNIAHAGGSVDLAIFSLHLAGASSILASINFITTIINMRTPGMTFDRLP 182

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00037  183 LFVWSVFITAFLLLLSLPVLAGAITMLLTDRNINTTFFDPAGG 225
COX1 MTH00077
cytochrome c oxidase subunit I; Provisional
 1-202 4.36e-94

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214419  Cd Length: 514  Bit Score: 283.37  E-value: 4.36e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGTLT-DDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00077   23 GAWAGMVGTALSLLIRAELSQPGTLLgDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSF 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00077  103 WLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTSINMKPPSMSQYQTP 182

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00077  183 LFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGG 225
COX1 MTH00007
cytochrome c oxidase subunit I; Validated
 1-202 5.83e-94

cytochrome c oxidase subunit I; Validated


Pssm-ID: 133649  Cd Length: 511  Bit Score: 282.95  E-value: 5.83e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGT-LTDDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00007   20 GVWGGLLGTSMSLLIRIELGQPGAfLGSDQLYNTIVTAHAFLMIFFLVMPVFIGGFGNWLVPLMLGAPDMAFPRLNNMSF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00007  100 WLLPPALILLVSSAAVEKGVGTGWTVYPPLASNLAHAGPSVDLAIFSLHLAGVSSILGAINFITTVINMRWKGLRLERIP 179

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00007  180 LFVWAVVITVVLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGG 222
COX1 MTH00079
cytochrome c oxidase subunit I; Provisional
 1-202 3.61e-87

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177148  Cd Length: 508  Bit Score: 265.39  E-value: 3.61e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGT-LTDDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00079   24 GLWSGMVGTSLSLIIRLELSKPGLlLGNGQLYNSVITAHAILMIFFMVMPSMIGGFGNWMLPLMLGAPDMSFPRLNNLSF 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSaSLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00079  104 WLLPTSLFLILDSCFVDMGPGTSWTVYPPLS-TLGHPGSSVDLAIFSLHCAGISSILGGINFMVTTKNLRSSSISLEHMS 182

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00079  183 LFVWTVFVTVFLLVLSLPVLAGAITMLLTDRNLNTSFFDPSTG 225
COX1 MTH00026
cytochrome c oxidase subunit I; Provisional
 1-202 8.75e-84

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 164599  Cd Length: 534  Bit Score: 257.63  E-value: 8.75e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGT-LTDDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:MTH00026   24 GALSGAIGTAFSMLIRLELSSPGSmLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNNISF 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:MTH00026  104 WLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIP 183

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00026  184 LFVWSVFITAILLLLSLPVLAGAITMLLTDRNFNTTFFDPAGG 226
Heme_Cu_Oxidase_I cd00919
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-202 5.33e-72

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


Pssm-ID: 238461  Cd Length: 463  Bit Score: 225.10  E-value: 5.33e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSGT-LTDDHFFNVVVTAHAFVMIFFMVMPVMIGGFGNWMVPLlIGAPDMSFPRMNNMSF 79
Cdd:cd00919    12 AFVALLLGGLLALLIRLELATPGSlFLDPQLYNQLVTAHGVIMIFFFVMPAIFGGFGNLLPPL-IGARDLAFPRLNNLSF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVS 159
Cdd:cd00919    91 WLFPPGLLLLLSSVLVGGGAGTGWTFYPPLSTLSYSSGVGVDLAILGLHLAGVSSILGAINFITTILNMRAPGMTLDKMP 170

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:cd00919   171 LFVWSVLVTAILLLLALPVLAAALVMLLLDRNFGTSFFDPAGG 213
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
6-202 1.93e-62

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 202.28  E-value: 1.93e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   6 MVGTGLSLLIRLELGTSG-TLTDDHFFNVVVTAHAFVMIFFMVMPvMIGGFGNWMVPLLIGAPDMSFPRMNNMSFWLLPP 84
Cdd:COG0843    31 LIGGLLALLMRLQLAGPGlGLLSPETYNQLFTMHGTIMIFFFATP-FLAGFGNYLVPLQIGARDMAFPRLNALSFWLYLF 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  85 SFTLLICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVSLFVWS 164
Cdd:COG0843   110 GGLLLLISLFVGGAADVGWTFYPPLSGLEASPGVGVDLWLLGLALFGVGSILGGVNFIVTILKMRAPGMTLMRMPLFTWA 189

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2007099785 165 ILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:COG0843   190 ALVTSILILLAFPVLAAALLLLLLDRSLGTHFFDPAGG 227
COX1 MTH00048
cytochrome c oxidase subunit I; Provisional
 1-202 1.31e-57

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177123  Cd Length: 511  Bit Score: 189.12  E-value: 1.31e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGtsgtltdDHFFNVV--------VTAHAFVMIFFMVMPVMIGGFGNWMVPLLIGAPDMSFP 72
Cdd:MTH00048   24 GVWSGFVGLSLSLLIRLNFL-------DPYYNVIsldvynflITNHGIIMIFFFLMPVLIGGFGNYLLPLLLGLSDLNLP 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  73 RMNNMSFWLLPPSFTLLICSSLveGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSG 152
Cdd:MTH00048   97 RLNALSAWLLVPSIVFLLLSMC--LGAGVGWTFYPPLSSSLFSSSWGVDFLMFSLHLAGVSSLFGSINFICTIYSAFMTN 174

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2007099785 153 MTmERVSLFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:MTH00048  175 VF-SRTSIILWSYLFTSILLLLSLPVLAAAITMLLFDRNFGSAFFDPLGG 223
Ubiquinol_Oxidase_I cd01662
Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory ...
 11-202 3.30e-45

Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.


Pssm-ID: 238832  Cd Length: 501  Bit Score: 156.20  E-value: 3.30e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  11 LSLLIRLELGT-SGTLTDDHFFNVVVTAHAFVMIFFMVMPVMIGgFGNWMVPLLIGAPDMSFPRMNNMSFWLLPPSFTLL 89
Cdd:cd01662    28 DALLMRTQLALpGNDFLSPEHYNQIFTMHGTIMIFLFAMPLVFG-LMNYLVPLQIGARDVAFPRLNALSFWLFLFGGLLL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  90 ICSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVSLFVWSILVTV 169
Cdd:cd01662   107 NASLLIGGFPDAGWFAYPPLSGLEYSPGVGVDYWILGLQFSGIGTLLGAINFIVTILKMRAPGMTLMRMPIFTWTTLVTS 186

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2007099785 170 FLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:cd01662   187 ILILFAFPVLTAALALLELDRYFGTHFFTNALG 219
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 1-200 2.76e-38

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 136.55  E-value: 2.76e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785   1 GIWCGMVGTGLSLLIRLELGTSG-TLTDDHFFNVVVTAHAFVMIFFMVMPvMIGGFGNWMVPLLIGAPDMSFPRMNNMSF 79
Cdd:pfam00115  10 ALVWFLVGGLLGLLIRLQLAFPGlNFLSPLTYNQLRTLHGNLMIFWFATP-FLFGFGNYLVPLMIGARDMAFPRLNALSF 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  80 WLLPPSFTLLICSSlveGGAGTGWTVYPPLsaslahsgAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMeRVS 159
Cdd:pfam00115  89 WLVVLGAVLLLASF---GGATTGWTEYPPL--------VGVDLWYIGLLLAGVSSLLGAINFIVTILKRRAPGMTL-RMP 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2007099785 160 LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDPA 200
Cdd:pfam00115 157 LFVWAILATAILILLAFPVLAAALLLLLLDRSLGAGGGDPL 197
PRK15017 PRK15017
cytochrome o ubiquinol oxidase subunit I; Provisional
 29-197 1.80e-30

cytochrome o ubiquinol oxidase subunit I; Provisional


Pssm-ID: 184978  Cd Length: 663  Bit Score: 117.34  E-value: 1.80e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  29 HFFNVVVTAHAFVMIFFMVMPVMIGgFGNWMVPLLIGAPDMSFPRMNNMSFWLLPPSFTLLICSSLVEGGAGTGWTVYPP 108
Cdd:PRK15017   97 HHYDQIFTAHGVIMIFFVAMPFVIG-LMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPP 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785 109 LSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVSLFVWSILVTVFLLLLSLPVLAGAITMLLT 188
Cdd:PRK15017  176 LSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTL 255


                  ....*....
gi 2007099785 189 DRNFNTSFF 197
Cdd:PRK15017  256 DRYLGTHFF 264
QoxB TIGR02882
cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type ...
 12-202 3.73e-30

cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]


Pssm-ID: 131928  Cd Length: 643  Bit Score: 116.11  E-value: 3.73e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  12 SLLIRLELGT-SGTLTDDHFFNVVVTAHAFVMIFFMVMPVMIGgFGNWMVPLLIGAPDMSFPRMNNMSFWLLPPSFTLLI 90
Cdd:TIGR02882  72 ALLMRAQLTVpDNKFLDAQHYNEIFTTHGVIMIIFMAMPFIIG-LMNIVVPLQIGARDVAFPVLNALSFWLFFAGAMLFN 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007099785  91 CSSLVEGGAGTGWTVYPPLSASLAHSGAAVDLAIFSLHLAGMSSILGAINFITTIFNMRVSGMTMERVSLFVWSILVTVF 170
Cdd:TIGR02882 151 ISFVIGGSPDAGWTNYAPLAGPEFSPGVGVNYYLIALQISGIGTLMTGINFFVTILKMRAPGMKLMQMPMFTWTTLITTL 230

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2007099785 171 LLLLSLPVLAGAITMLLTDRNFNTSFFDPAGG 202
Cdd:TIGR02882 231 IIIFAFPVLTVALALMTTDRIFDTAFFTVAHG 262
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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