|
Name |
Accession |
Description |
Interval |
E-value |
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
51-786 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 699.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 51 VKVEGNQTIEPATIISYAGIGRGETVSAARLNDAYQGIVNSGLFESVELVPQGSTLLIRVVEYPMVNIVNFEGNSRLKDE 130
Cdd:TIGR03303 6 IRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNKEIKKD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 131 ELAEI-AKSKGRFVYSPSQAEEDAANIAEAYRLRGRIAATVEPRIIRRDGNRVDLVFEITEGKVAEIERLSFVGNRAFSD 209
Cdd:TIGR03303 86 QLKKAlVGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFVGNKAFSD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 210 RRLRQVLETKQAGLLRQIIQSDTFVAERLELDKQLLRDFYLARGYADVQVLDATSDVARERDAFFVTITIREGQQFRIGE 289
Cdd:TIGR03303 166 SELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEGEQYKFGE 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 290 VSTVSEIEGLDAaEFAAVQRIRKGEVWSPALIDNNIARMENLALRKGLNFVRVDPRITRDERGGVLDVEFAIVRGERIFV 369
Cdd:TIGR03303 246 VTIEGDLIGPDE-ELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDPGKRVYV 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 370 ERIDIEGNTTTLDQVVRRQFRTVEGDPLNAREIRQSAERIRALGYFADASVNAEPGSTPDQVVVNVDVEEQPTGSLTFGA 449
Cdd:TIGR03303 325 RRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPVGSPDQVDLNVKVKEQPTGSISFGV 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 450 SYGVSTGVGFNVGLSEQNFLGRGQAVGLSLTSGTDSAEGSFSFVEPAFLGRDVALKFAVSYRESDNENS--STYDSRIAR 527
Cdd:TIGR03303 405 GYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKnfSDYKTKTYG 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 528 ISPALEFPLGELSRLEVRYSYQDSKISNVPATSSQILRLEDAQ-GAVTTSAIGYTYSYDSRISGLNPKGGVLLRFGQDFA 606
Cdd:TIGR03303 485 GSINLGYPITEYLRVSLGYGYEQNKIKDDSDSDSSASYFIKEQgGKFIDSSLSYGWSYDTLDSGYFPTKGSIQRLSQEFA 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 607 GLGGDSKYVMTTALALAETKVRQE-EVTLRAIFEGGMINSLGGTNSRITERFF--GNGKIRGFEPGGIGPRElgAGATAE 683
Cdd:TIGR03303 565 GPGGDLKYYKLTYDSEYYIPLSKEdDWVLSLRGRLGYGNGYGGKDLPFYERFYagGIGSVRGFESNGIGPRD--INDSGD 642
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 684 ALGGNMFAVARFEADFPV-GLPEEYGITGGLFFDVGSVWSLDNVNgglagADIVDDSMNLRSSIGFSIFWETPVGPLRLN 762
Cdd:TIGR03303 643 SIGGNAMATANVELIFPLpFLPEDNGLRGSVFFDAGNVWGTDQKK-----EGDYSDDSSLRASVGVGLRWISPMGPLRFS 717
|
730 740
....*....|....*....|....
gi 1998223349 763 FAKPLVKETYDVEQTFDLTVSTKF 786
Cdd:TIGR03303 718 YAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
48-786 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 635.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 48 FSTVKVEGNQTIEPATIISYAGIGRGETVSAARLNDAYQGIVNSGLFESVELVPQGSTLLIRVVEYPMVNIVNFEGNSRL 127
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 128 KDEELAEIAKSKGRFVYSPSQAEEDAANIAEAYRLRGRIAATVEpriIRRDGNRVDLVFEITEGKVAEIERLSFVGNRAF 207
Cdd:COG4775 81 KDEDLKKELGLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT---ITPERNRVDLTFEIDEGEKAKIKKINFVGNKAF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 208 SDRRLRQVLETKQAGLLrqiIQSDTFVAERLELDKQLLRDFYLARGYADVQVLDATSDVARERDAFFVTITIREGQQFRI 287
Cdd:COG4775 158 SDKELRKVLKTKESGWL---TKSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQYKV 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 288 GEVSTVSEIegLDAAEFAAVQRIRKGEVWSPALIDNNIARMENLALRKGLNFVRVDPRITRDERGGVLDVEFAIVRGERI 367
Cdd:COG4775 235 GDIKFEGNL--VDEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGPRV 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 368 FVERIDIEGNTTTLDQVVRRQFRTVEGDPLNAREIRQSAERIRALGYFADASVNAEPG-STPDQVVVNVDVEEQPTGSLT 446
Cdd:COG4775 313 YVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGpSTPDQVDLVVDVKEKPTGSLS 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 447 FGASYGVSTGVGFNVGLSEQNFLGRGQAVGLSLTSGTDSAEGSFSFVEPAFLGRDVALKFAVSYRESDNENSSTYDSRIA 526
Cdd:COG4775 393 LGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASDYSSYDLKRT 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 527 RISPALEFPLGELSRLEVRYSYQDSKISNVPATSSQILrleDAQGAVTTSAIGYTYSYDSRISGLNPKGGVLLRFGQDFA 606
Cdd:COG4775 473 GGGLGLGYPLSEDLRLSLGYGYERTDISDVDSSPDYLP---DQNGSSNTSSLGLGLTYDTRDNPLFPTRGSYLSLSLEFA 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 607 G--LGGDSKYVMTTALALAETKVRqEEVTLRAIFEGGMINSLGGtNSRITERFF--GNGKIRGFEPGGIGPRelgagata 682
Cdd:COG4775 550 GpyLGGDLEYYKLSADARYYFPLG-KKLVLALRAEAGYLGGYGK-DLPFFERFYlgGFGSLRGYEENSLGPR-------- 619
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 683 eaLGGNMFAVARFEADFPVGLPEEYGITGGLFFDVGSVWSLDNvngglagadiVDDSMNLRSSIGFSIFWETPVGPLRLN 762
Cdd:COG4775 620 --LGGNAYLLGSAELRFPLPLPPSAGLRGALFVDAGNVWDSGD----------DFDLSDLRYSAGVGLRWDTPLGPLRLD 687
|
730 740
....*....|....*....|....
gi 1998223349 763 FAKPLVKETYDVEQTFDLTVSTKF 786
Cdd:COG4775 688 YAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
73-782 |
1.37e-81 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 277.70 E-value: 1.37e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 73 GETVSAARLNDAYQGIVNSGLFESVELVPQGSTLLIRVVEYPMVNIVNFEGNSRLKDEELAEIAKSKGRFVySPSQAEED 152
Cdd:PRK11067 51 GDTVNDEDISNTIRALFATGNFEDVRVLRDGNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRV-GEALDRTT 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 153 AANIAEA----YRLRGRIAATVEPRIIRRDGNRVDLVFEITEGKVAEIERLSFVGNRAFSDRRLrqvLETKQaglLRQII 228
Cdd:PRK11067 130 LSNIEKGledfYYSVGKYSASVKAVVTPLPRNRVDLKLVFTEGVSAKIQQINIVGNHAFSTDEL---ISRFQ---LRDEV 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 229 QSDTFVAER------LELDKQLLRDFYLARGYADVQVlDATS-DVARERDAFFVTITIREGQQFRIGEVSTVSEIEGlDA 301
Cdd:PRK11067 204 PWWNVVGDRkyqkqkLAGDLETLRSYYLDRGYARFNI-DSTQvSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAG-HS 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 302 AEFAAVQRIRKGEVWSPAlidnNIARMEN----LALRKGLNFVRV--DPRITRDERGGVLDVEfaIVRGERIFVERIDIE 375
Cdd:PRK11067 282 AEIEKLTKIEPGELYNGT----KVTKMEDdikkLLGRYGYAYPRVqtQPEINDADKTVKLHVN--VDAGNRFYVRKIRFE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 376 GNTTTLDQVVRRQFRTVEGDPLNAREIRQSAERIRALGYFADASVNAE--PGStPDQVVVNVDVEEQPTGSLTFGASYGV 453
Cdd:PRK11067 356 GNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDVDTQrvPGS-PDQVDVVYKVKERNTGSFNFGVGYGT 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 454 STGVGFNVGLSEQNFLGRGQAVGLSLTSGTDSAEGSFSFVEPAFLGRDVALKFAVSYR--ESDNENSSTYDSRIARISPA 531
Cdd:PRK11067 435 ESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTVDGVSLGGRIFYNdfEADDADLSDYTNKSYGTDVT 514
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 532 LEFPLGELSRLEVRYSYQDSKISNVPaTSSQILRLEDAQG-----------AVTTSAIGYTYSYDSRISGLNPKGGVLLR 600
Cdd:PRK11067 515 LGFPINENNSLRAGLGYVHNSLSNMQ-PQVAMWRYLYSMGenpssdsdnsfKTDDFTFNYGWTYNNLDRGYFPTAGNRVN 593
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 601 FGQDFAGLGGDSKYVMTT---ALALAETKVRQEEVTLRAifEGGMINSLGGTNSRITERFF--GNGKIRGFEPGGIGPRE 675
Cdd:PRK11067 594 LTGKVTIPGSDNEYYKVTldtAQYVPLDDDHKWVLLGRG--RLGYGDGLGGKEMPFYENFYagGSSTVRGFQSNTIGPKA 671
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 676 L---------------GAGATAEALGGNMFAVARFEADFPVG-LPEEYG--ITGGLFFDVGSVW--SLDNVNGGLAgADI 735
Cdd:PRK11067 672 VyypgqasnytqdgakDLCKSDDAVGGNAMAVASLELITPTPfISDKYAnsVRTSFFWDMGTVWdtNWDNTAYTRA-AGY 750
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 1998223349 736 VD--DSMNLRSSIGFSIFWETPVGPLRLNFAKPLVKETYDVEQTFDLTV 782
Cdd:PRK11067 751 PDysDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNI 799
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
467-778 |
3.71e-57 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 197.96 E-value: 3.71e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 467 NFLGRGQAVGLSLTSGTDSAEGSFSFVEPAFLGRDVALKFAVSYRESDNE--NSSTYDSRIARISPALEFPLGELSRLEV 544
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDrdSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 545 RYSYQDSKISNVPATSSQ--ILRLEDAQGAVTTSAIGYTYSYDSRISGLNPKGGVLLRFGQDFAG--LGGDSKYVMTTAL 620
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIrnYYPSASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGDVSYYKLTAD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 621 A-LAETKVRQEEVTLRAIFEGGMINSLGGTNSRITERFF--GNGKIRGFEPGGIGPRElgagATAEALGGNMFAVARFEA 697
Cdd:pfam01103 161 GsYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYagGSNSVRGFEYGGIGPRD----EDGDALGGNSYVVASLEL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 698 DFPVGLPEEYGITGGLFFDVGSVWSLDNVNGGlaGADIVDDSMNLRSSIGFSIFWETPVGPLRLNFAKPLVKETYDVEQT 777
Cdd:pfam01103 237 RFPLPFVPKQSVRGVLFFDAGNVWNTGSTDPG--SSRGARSKAGIRASVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQR 314
|
.
gi 1998223349 778 F 778
Cdd:pfam01103 315 F 315
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
51-786 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 699.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 51 VKVEGNQTIEPATIISYAGIGRGETVSAARLNDAYQGIVNSGLFESVELVPQGSTLLIRVVEYPMVNIVNFEGNSRLKDE 130
Cdd:TIGR03303 6 IRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNKEIKKD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 131 ELAEI-AKSKGRFVYSPSQAEEDAANIAEAYRLRGRIAATVEPRIIRRDGNRVDLVFEITEGKVAEIERLSFVGNRAFSD 209
Cdd:TIGR03303 86 QLKKAlVGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFVGNKAFSD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 210 RRLRQVLETKQAGLLRQIIQSDTFVAERLELDKQLLRDFYLARGYADVQVLDATSDVARERDAFFVTITIREGQQFRIGE 289
Cdd:TIGR03303 166 SELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEGEQYKFGE 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 290 VSTVSEIEGLDAaEFAAVQRIRKGEVWSPALIDNNIARMENLALRKGLNFVRVDPRITRDERGGVLDVEFAIVRGERIFV 369
Cdd:TIGR03303 246 VTIEGDLIGPDE-ELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDPGKRVYV 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 370 ERIDIEGNTTTLDQVVRRQFRTVEGDPLNAREIRQSAERIRALGYFADASVNAEPGSTPDQVVVNVDVEEQPTGSLTFGA 449
Cdd:TIGR03303 325 RRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPVGSPDQVDLNVKVKEQPTGSISFGV 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 450 SYGVSTGVGFNVGLSEQNFLGRGQAVGLSLTSGTDSAEGSFSFVEPAFLGRDVALKFAVSYRESDNENS--STYDSRIAR 527
Cdd:TIGR03303 405 GYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKnfSDYKTKTYG 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 528 ISPALEFPLGELSRLEVRYSYQDSKISNVPATSSQILRLEDAQ-GAVTTSAIGYTYSYDSRISGLNPKGGVLLRFGQDFA 606
Cdd:TIGR03303 485 GSINLGYPITEYLRVSLGYGYEQNKIKDDSDSDSSASYFIKEQgGKFIDSSLSYGWSYDTLDSGYFPTKGSIQRLSQEFA 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 607 GLGGDSKYVMTTALALAETKVRQE-EVTLRAIFEGGMINSLGGTNSRITERFF--GNGKIRGFEPGGIGPRElgAGATAE 683
Cdd:TIGR03303 565 GPGGDLKYYKLTYDSEYYIPLSKEdDWVLSLRGRLGYGNGYGGKDLPFYERFYagGIGSVRGFESNGIGPRD--INDSGD 642
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 684 ALGGNMFAVARFEADFPV-GLPEEYGITGGLFFDVGSVWSLDNVNgglagADIVDDSMNLRSSIGFSIFWETPVGPLRLN 762
Cdd:TIGR03303 643 SIGGNAMATANVELIFPLpFLPEDNGLRGSVFFDAGNVWGTDQKK-----EGDYSDDSSLRASVGVGLRWISPMGPLRFS 717
|
730 740
....*....|....*....|....
gi 1998223349 763 FAKPLVKETYDVEQTFDLTVSTKF 786
Cdd:TIGR03303 718 YAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
48-786 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 635.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 48 FSTVKVEGNQTIEPATIISYAGIGRGETVSAARLNDAYQGIVNSGLFESVELVPQGSTLLIRVVEYPMVNIVNFEGNSRL 127
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 128 KDEELAEIAKSKGRFVYSPSQAEEDAANIAEAYRLRGRIAATVEpriIRRDGNRVDLVFEITEGKVAEIERLSFVGNRAF 207
Cdd:COG4775 81 KDEDLKKELGLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT---ITPERNRVDLTFEIDEGEKAKIKKINFVGNKAF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 208 SDRRLRQVLETKQAGLLrqiIQSDTFVAERLELDKQLLRDFYLARGYADVQVLDATSDVARERDAFFVTITIREGQQFRI 287
Cdd:COG4775 158 SDKELRKVLKTKESGWL---TKSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQYKV 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 288 GEVSTVSEIegLDAAEFAAVQRIRKGEVWSPALIDNNIARMENLALRKGLNFVRVDPRITRDERGGVLDVEFAIVRGERI 367
Cdd:COG4775 235 GDIKFEGNL--VDEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGPRV 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 368 FVERIDIEGNTTTLDQVVRRQFRTVEGDPLNAREIRQSAERIRALGYFADASVNAEPG-STPDQVVVNVDVEEQPTGSLT 446
Cdd:COG4775 313 YVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGpSTPDQVDLVVDVKEKPTGSLS 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 447 FGASYGVSTGVGFNVGLSEQNFLGRGQAVGLSLTSGTDSAEGSFSFVEPAFLGRDVALKFAVSYRESDNENSSTYDSRIA 526
Cdd:COG4775 393 LGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASDYSSYDLKRT 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 527 RISPALEFPLGELSRLEVRYSYQDSKISNVPATSSQILrleDAQGAVTTSAIGYTYSYDSRISGLNPKGGVLLRFGQDFA 606
Cdd:COG4775 473 GGGLGLGYPLSEDLRLSLGYGYERTDISDVDSSPDYLP---DQNGSSNTSSLGLGLTYDTRDNPLFPTRGSYLSLSLEFA 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 607 G--LGGDSKYVMTTALALAETKVRqEEVTLRAIFEGGMINSLGGtNSRITERFF--GNGKIRGFEPGGIGPRelgagata 682
Cdd:COG4775 550 GpyLGGDLEYYKLSADARYYFPLG-KKLVLALRAEAGYLGGYGK-DLPFFERFYlgGFGSLRGYEENSLGPR-------- 619
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 683 eaLGGNMFAVARFEADFPVGLPEEYGITGGLFFDVGSVWSLDNvngglagadiVDDSMNLRSSIGFSIFWETPVGPLRLN 762
Cdd:COG4775 620 --LGGNAYLLGSAELRFPLPLPPSAGLRGALFVDAGNVWDSGD----------DFDLSDLRYSAGVGLRWDTPLGPLRLD 687
|
730 740
....*....|....*....|....
gi 1998223349 763 FAKPLVKETYDVEQTFDLTVSTKF 786
Cdd:COG4775 688 YAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
73-782 |
1.37e-81 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 277.70 E-value: 1.37e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 73 GETVSAARLNDAYQGIVNSGLFESVELVPQGSTLLIRVVEYPMVNIVNFEGNSRLKDEELAEIAKSKGRFVySPSQAEED 152
Cdd:PRK11067 51 GDTVNDEDISNTIRALFATGNFEDVRVLRDGNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRV-GEALDRTT 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 153 AANIAEA----YRLRGRIAATVEPRIIRRDGNRVDLVFEITEGKVAEIERLSFVGNRAFSDRRLrqvLETKQaglLRQII 228
Cdd:PRK11067 130 LSNIEKGledfYYSVGKYSASVKAVVTPLPRNRVDLKLVFTEGVSAKIQQINIVGNHAFSTDEL---ISRFQ---LRDEV 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 229 QSDTFVAER------LELDKQLLRDFYLARGYADVQVlDATS-DVARERDAFFVTITIREGQQFRIGEVSTVSEIEGlDA 301
Cdd:PRK11067 204 PWWNVVGDRkyqkqkLAGDLETLRSYYLDRGYARFNI-DSTQvSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAG-HS 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 302 AEFAAVQRIRKGEVWSPAlidnNIARMEN----LALRKGLNFVRV--DPRITRDERGGVLDVEfaIVRGERIFVERIDIE 375
Cdd:PRK11067 282 AEIEKLTKIEPGELYNGT----KVTKMEDdikkLLGRYGYAYPRVqtQPEINDADKTVKLHVN--VDAGNRFYVRKIRFE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 376 GNTTTLDQVVRRQFRTVEGDPLNAREIRQSAERIRALGYFADASVNAE--PGStPDQVVVNVDVEEQPTGSLTFGASYGV 453
Cdd:PRK11067 356 GNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDVDTQrvPGS-PDQVDVVYKVKERNTGSFNFGVGYGT 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 454 STGVGFNVGLSEQNFLGRGQAVGLSLTSGTDSAEGSFSFVEPAFLGRDVALKFAVSYR--ESDNENSSTYDSRIARISPA 531
Cdd:PRK11067 435 ESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTVDGVSLGGRIFYNdfEADDADLSDYTNKSYGTDVT 514
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 532 LEFPLGELSRLEVRYSYQDSKISNVPaTSSQILRLEDAQG-----------AVTTSAIGYTYSYDSRISGLNPKGGVLLR 600
Cdd:PRK11067 515 LGFPINENNSLRAGLGYVHNSLSNMQ-PQVAMWRYLYSMGenpssdsdnsfKTDDFTFNYGWTYNNLDRGYFPTAGNRVN 593
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 601 FGQDFAGLGGDSKYVMTT---ALALAETKVRQEEVTLRAifEGGMINSLGGTNSRITERFF--GNGKIRGFEPGGIGPRE 675
Cdd:PRK11067 594 LTGKVTIPGSDNEYYKVTldtAQYVPLDDDHKWVLLGRG--RLGYGDGLGGKEMPFYENFYagGSSTVRGFQSNTIGPKA 671
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 676 L---------------GAGATAEALGGNMFAVARFEADFPVG-LPEEYG--ITGGLFFDVGSVW--SLDNVNGGLAgADI 735
Cdd:PRK11067 672 VyypgqasnytqdgakDLCKSDDAVGGNAMAVASLELITPTPfISDKYAnsVRTSFFWDMGTVWdtNWDNTAYTRA-AGY 750
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 1998223349 736 VD--DSMNLRSSIGFSIFWETPVGPLRLNFAKPLVKETYDVEQTFDLTV 782
Cdd:PRK11067 751 PDysDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNI 799
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
467-778 |
3.71e-57 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 197.96 E-value: 3.71e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 467 NFLGRGQAVGLSLTSGTDSAEGSFSFVEPAFLGRDVALKFAVSYRESDNE--NSSTYDSRIARISPALEFPLGELSRLEV 544
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDrdSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 545 RYSYQDSKISNVPATSSQ--ILRLEDAQGAVTTSAIGYTYSYDSRISGLNPKGGVLLRFGQDFAG--LGGDSKYVMTTAL 620
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIrnYYPSASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGDVSYYKLTAD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 621 A-LAETKVRQEEVTLRAIFEGGMINSLGGTNSRITERFF--GNGKIRGFEPGGIGPRElgagATAEALGGNMFAVARFEA 697
Cdd:pfam01103 161 GsYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYagGSNSVRGFEYGGIGPRD----EDGDALGGNSYVVASLEL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 698 DFPVGLPEEYGITGGLFFDVGSVWSLDNVNGGlaGADIVDDSMNLRSSIGFSIFWETPVGPLRLNFAKPLVKETYDVEQT 777
Cdd:pfam01103 237 RFPLPFVPKQSVRGVLFFDAGNVWNTGSTDPG--SSRGARSKAGIRASVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQR 314
|
.
gi 1998223349 778 F 778
Cdd:pfam01103 315 F 315
|
|
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
234-767 |
1.86e-50 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 186.26 E-value: 1.86e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 234 VAERLELDKQLLRDFYLARGYADVQVldaTSDVARERDAFFVTITIREGQQFRIGEVSTVSEIEGLDAAEFAAVQR---I 310
Cdd:COG0729 53 LRRLARADPERIRAALRAEGYYSPTV---TIRLDGRDGPWTVTITVDPGPPVRIGKVDIELLGEAAQDPARRKLLAawpL 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 311 RKGEVWSPALIDNNIARMENLALRKGLNFVRV-DPRITRDERGGVLDVEFAIVRGERIFVERIDIEGNTTTLDQVVRRQF 389
Cdd:COG0729 130 KPGDPLRHGAYEAAKSALLDALRERGYPDARFtQSRAEVDPATNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 390 RTVEGDPLNAREIRQSAERIRALGYFADASVNAEPGSTPDQVV-VNVDVEEQPTGSLTFGASYGVSTGVGFNVGLSEQNF 468
Cdd:COG0729 210 PFKPGEPYSPDKLLELQQRLQSTGYFSSVRVTPDEDPAPDGTVpVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRNL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 469 LGRGQAVGLSLTSGTDSAEGSFSFVEPAFLGRDVALKFAVSYresDNENSSTYDSRIARISPALEFPLGE--LSRLEVRY 546
Cdd:COG0729 290 FGRGHRLRLELELSQPEQSLSADYRIPPLFPLGQYLSLGAGL---EREDTDDYDSRSLTLGAGRTRRLSDgwTRSLGLRL 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 547 SYQDSKISNVPATSSQILrledaqgavttsaIGYTYSYDSRISGLNPKGGVLLRFGQDFA--GLGGDSKYVMTTA----- 619
Cdd:COG0729 367 LYERFTDGDDDRTYTLLS-------------PGLSWTRDRRDDPLDPTRGYRLSLELGPGskLLGSDTSFLRLYArgswy 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 620 LALAEtKVRqeeVTLRAifEGGMInsLGGTNSRI--TERFF--GNGKIRGFEPGGIGPRElgagATAEALGGNMFAVARF 695
Cdd:COG0729 434 RPLGE-RHR---LAGRA--ELGAI--LGADFDDVppSLRFFagGDGSVRGYGYQSLGPRD----GDGDVIGGRSLAVGSL 501
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1998223349 696 EADFPVGlpEEYGitGGLFFDVGSVWslDNVngglagadivdDSMNLRSSIGFSIFWETPVGPLRLNFAKPL 767
Cdd:COG0729 502 EYRYRVT--ENWG--LAVFVDAGNAF--NDF-----------PFSDLKVGAGLGLRWYSPVGPIRLDLAYPL 556
|
|
| FhaC |
COG2831 |
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular ... |
281-786 |
5.87e-20 |
|
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442079 [Multi-domain] Cd Length: 547 Bit Score: 94.25 E-value: 5.87e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 281 EGQQFRIGEVstvsEIEGLDAAEFAAVQRIRK---GEVWSPALIDNNIARMENLALRKGLNFVRVD-PRitRDERGGVld 356
Cdd:COG2831 60 EGPCFTIKRI----RVEGNTVLPEEELQALLApylGRCLTLADLNALADAITNLYRDRGYITSRAYlPP--QDLSDGV-- 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 357 VEFAIVRGeriFVERIDIEGNTTTLDQVVRRQFRTVEGDPLNAREIRQSAERIRALGYfADASVNAEPGSTPDQVVVNVD 436
Cdd:COG2831 132 LRIQVVEG---RVGRIRVEGNSRLSRAYLRSALPLAEGKPLNLRDLEQGLLLLNRLPG-VQVTAELRPGTEPGTSDLVVT 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 437 VEEQP--TGSLTFGASYGVSTG-VGFNVGLSEQNFLGRGQAVGLSLTSGTDSAE---GSFSFVEPafLGRDvALKFAVSY 510
Cdd:COG2831 208 VEEAKpfRGSLGLDNSGSPSTGrYRLGASLSLDNLLGLGDQLSLSYSRSLDGDGsrsYSLSYSVP--LGYW-GLTLGLSY 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 511 RESDNENSSTY-------DSRIARISpaLEFPL-----GELSrLEVRYSYQDSKisnvpatsSQILRLEDAQGAVTTSAI 578
Cdd:COG2831 285 SRYRSRVGGPFgtldisgKSQTYGLR--LSYPLirsrdQKLS-LSLGLDYKDSR--------NYLLGTEIEVQRRRLSVL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 579 GYTYSYDSRISGLNPKGGVLLRFGQDFAG--------LGGDSKYVMTTALALAETKVRQeEVTLRAIFEGGMIN------ 644
Cdd:COG2831 354 RLGLSYTRRLGGGVLSLSLSFSQGLDWLGatpapdasRGPDGRFTKLRLSASRVQPLPQ-DFSLLLRLDGQYSSdpllss 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 645 ---SLGGTNSriterffgngkIRGFEPGgigprelgagataeALGGNMFAVARFEADFPVGLPE-EYGITGGLFFDVGSV 720
Cdd:COG2831 433 eqfSLGGRYS-----------VRGYDEG--------------ELSGDNGWYLSNELRWPLPRLSlLGGLQLYAFLDAGRV 487
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1998223349 721 WSLDNVNGGLAGADIVDDSMNLRSSIGFSIFwetpvgpLRLNFAKPLVKETYDVEQ-TFDLTVSTKF 786
Cdd:COG2831 488 WNNSALPGQLNGRTLAGAGLGLRLSLGKNLS-------LDLDYARPLGDPDGDTDNrRLYFSLSYSF 547
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
116-191 |
1.46e-11 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 60.82 E-value: 1.46e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1998223349 116 VNIVNFEGNSRLKDEELAEIAKSKGRFVYSPSQAEEDAANIAEAYRLRGRIAATVEPRI-IRRDGNRVDLVFEITEG 191
Cdd:pfam07244 2 IGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVeIDDEVNTVDLTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
196-282 |
1.63e-11 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 60.43 E-value: 1.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 196 IERLSFVGNRAFSDRRLRQVLETKQagllrqiiqSDTFVAERLELDKQLLRDFYLARGYADVQVlDATSDVARERDAFFV 275
Cdd:pfam07244 2 IGDINFEGNKKTKDEELRRLLGLKE---------GDVYNREKLEEDKEALKDRYGRLGYFDASV-STNVEIDDEVNTVDL 71
|
....*..
gi 1998223349 276 TITIREG 282
Cdd:pfam07244 72 TFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
369-439 |
2.00e-10 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 57.35 E-value: 2.00e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1998223349 369 VERIDIEGNTTTLDQVVRRQFRTVEGDPLNAREIRQSAERIR----ALGYF-ADASVNAEPGSTPDQVVVNVDVEE 439
Cdd:pfam07244 2 IGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEALKdrygRLGYFdASVSTNVEIDDEVNTVDLTFNVDE 77
|
|
| 3a0901s03IAP75 |
TIGR00992 |
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved ... |
353-762 |
2.56e-09 |
|
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130065 [Multi-domain] Cd Length: 718 Bit Score: 60.74 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 353 GVLDVEFAIVRG--ERIFVERIDIEGNTT---TLDQVVRRQFRTV--EGDPLNAREIRQSAERIRALGYFADASVNAEPG 425
Cdd:TIGR00992 253 NTDEVVCEVVEGdiTNLQIQFFDKLGNVVegnTRDPVVTRELPKQlkPGDVFNIEAGKTALQNINSLGLFSNIEVNPRPD 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 426 ST-PDQVVVNVDVEEQPTGSLTFGASYGV-----------STGVGFNVGLSEQNFLGRGQAVGLSLTSGT-----DSAEG 488
Cdd:TIGR00992 333 EMnEGEIIVEIKLKELEQKSAEVSTEWSIvpgrggrptlaSSQPGGTITFEHRNLQGLNRSLGGSVTTSNflnpqDDLLF 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 489 SFSFVEPAFLGrdVALKFAVSYResdnenSSTYDSRiaRISPAL-------EFPLGELSRLEVRYSYQDSKISNVPATSS 561
Cdd:TIGR00992 413 KVEYTHPYLDG--VDNPRNRTYT------ASCFNSR--KLSPVFtggpgvnEVPSIWVDRAGVKANITENFARQSKFTYG 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 562 QIL---------RLEDAQGA--------------VTTSAIG--------YTYSYDSRISGLNPKGGVLLRFGQDfAGLGG 610
Cdd:TIGR00992 483 LVMeeiftrdesRHINANGQrslpsgpisadgppTTLSGTGvdrmaflqANITRDNTNFVNGPTVGSRVRFQVD-QGLGV 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 611 DSKYVMTTALALAETKVRQ-EEVTLRA--------IFEGGMINSLGGTNSRITERFFGNGKIRGFEPGgigprELGAGAT 681
Cdd:TIGR00992 562 GSGFPFFNRHQLTYTKFIQlNWVELGAgkspppvlVLHGHYGGCVGDLPSYDAFILGGPYSVRGYNMG-----ELGAARN 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 682 aealggnmFAVARFEADFPVglpeeYGITGGLFFDVGS-VWSLDNVNGGLAgadIVDDSMNLRSSIGFSIFWETPVGPLR 760
Cdd:TIGR00992 637 --------IFEATAEIRIPI-----KATHVYAFVEHGSdLGSSKDVKGNPT---IVYRRPGQGSSYGAGVKLGLVRAEYA 700
|
..
gi 1998223349 761 LN 762
Cdd:TIGR00992 701 VD 702
|
|
| FtsQ |
COG1589 |
Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning]; ... |
1-187 |
6.28e-05 |
|
Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441197 [Multi-domain] Cd Length: 241 Bit Score: 45.40 E-value: 6.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 1 MRKPTGVFGASAETKTGVLrpALIAVFLSSAAISTPFLTPAIAqsysFSTVKVEGNQTIEPATIISYAGIGRGETVSAAR 80
Cdd:COG1589 1 MSKLRLRRKRRRRRRLRLL--LLLLLLLLALLVWLLLFSPLFP----VREVEVEGNSHVSAEEIRAALGILLGGNLFTLD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998223349 81 LNDAYQGIVNSGLFESVELVPQ-GSTLLIRVVEYPMVNIVNFEGNSRLKDEELAEIAKSKGRF------VYSPSQAEEDA 153
Cdd:COG1589 75 LDAIRERLEALPWVKSASVRRRwPDTLVIEVTEREPVARWNTGGGYYLVDADGVVFEAVSAEPpadlplLTGPDGSEKAV 154
|
170 180 190
....*....|....*....|....*....|....
gi 1998223349 154 ANIAEAYRLRGRIAATVEpRIIRRDGNRVDLVFE 187
Cdd:COG1589 155 LALLELLAALPELRLQIS-EISLSSRGRWTLTLD 187
|
|
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
46-102 |
4.77e-04 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 43.73 E-value: 4.77e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1998223349 46 YSFSTVKVEGNQTIEPATIISYAGIGRGETVSAARLNDAYQGIVNSGLFESVELVPQ 102
Cdd:COG0729 187 YRFGEITVEGLSRVPEDFLRRLAPFKPGEPYSPDKLLELQQRLQSTGYFSSVRVTPD 243
|
|
| |
