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Conserved domains on  [gi|1995151721|ref|XP_039684500|]
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uncharacterized protein LOC11426586 isoform X7 [Medicago truncatula]

Protein Classification

HAT repeat-containing protein( domain architecture ID 10647625)

HAT (Half-A-TPR) repeat-containing protein similar to Candida albicans pre-mRNA-splicing factor CLF1 that is involved in pre-mRNA splicing and cell cycle progression

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HAT smart00386
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ...
 87-119 3.53e-06

HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.


:

Pssm-ID: 214642 [Multi-domain]  Cd Length: 33  Bit Score: 44.46  E-value: 3.53e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1995151721   87 GDFDWAVKLYERCLIVCANYPDYWMRYADFMEA 119
Cdd:smart00386   1 GDIERARKIYERALEKFPKSVELWLKYAEFEER 33
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 74-255 4.22e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 4.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995151721  74 QNWHAYLDFIELH---GDFDWAVKLYERCLIVCANYPDYWMRYADFMEAKGGREIANYSLDRATEIYLKSVPAIHLFnAR 150
Cdd:COG2956    74 DRAEALLELAQDYlkaGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL-AE 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995151721 151 FKEQIGDVLAARAAYiHRCKETDSDFVENVISKANMEKRLGNMESAFSIYKealeiaAAEEKQPALPILYVHFSRLkFMS 230
Cdd:COG2956   153 LYLEQGDYDEAIEAL-EKALKLDPDCARALLLLAELYLEQGDYEEAIAALE------RALEQDPDYLPALPRLAEL-YEK 224

                         170       180
                  ....*....|....*....|....*
gi 1995151721 231 TNDVDAARVVLIDGIRTLPQNKLLL 255
Cdd:COG2956   225 LGDPEEALELLRKALELDPSDDLLL 249
 
Name Accession Description Interval E-value
HAT smart00386
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ...
 87-119 3.53e-06

HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.


Pssm-ID: 214642 [Multi-domain]  Cd Length: 33  Bit Score: 44.46  E-value: 3.53e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1995151721   87 GDFDWAVKLYERCLIVCANYPDYWMRYADFMEA 119
Cdd:smart00386   1 GDIERARKIYERALEKFPKSVELWLKYAEFEER 33
TPR_14 pfam13428
Tetratricopeptide repeat;
76-116 3.74e-04

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 38.94  E-value: 3.74e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1995151721  76 WHAYLDFIELHGDFDWAVKLYERCLIVCANYPDYWMRYADF 116
Cdd:pfam13428   4 LLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 74-255 4.22e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 4.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995151721  74 QNWHAYLDFIELH---GDFDWAVKLYERCLIVCANYPDYWMRYADFMEAKGGREIANYSLDRATEIYLKSVPAIHLFnAR 150
Cdd:COG2956    74 DRAEALLELAQDYlkaGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL-AE 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995151721 151 FKEQIGDVLAARAAYiHRCKETDSDFVENVISKANMEKRLGNMESAFSIYKealeiaAAEEKQPALPILYVHFSRLkFMS 230
Cdd:COG2956   153 LYLEQGDYDEAIEAL-EKALKLDPDCARALLLLAELYLEQGDYEEAIAALE------RALEQDPDYLPALPRLAEL-YEK 224

                         170       180
                  ....*....|....*....|....*
gi 1995151721 231 TNDVDAARVVLIDGIRTLPQNKLLL 255
Cdd:COG2956   225 LGDPEEALELLRKALELDPSDDLLL 249
 
Name Accession Description Interval E-value
HAT smart00386
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ...
 87-119 3.53e-06

HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.


Pssm-ID: 214642 [Multi-domain]  Cd Length: 33  Bit Score: 44.46  E-value: 3.53e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1995151721   87 GDFDWAVKLYERCLIVCANYPDYWMRYADFMEA 119
Cdd:smart00386   1 GDIERARKIYERALEKFPKSVELWLKYAEFEER 33
TPR_14 pfam13428
Tetratricopeptide repeat;
76-116 3.74e-04

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 38.94  E-value: 3.74e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1995151721  76 WHAYLDFIELHGDFDWAVKLYERCLIVCANYPDYWMRYADF 116
Cdd:pfam13428   4 LLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 74-255 4.22e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 4.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995151721  74 QNWHAYLDFIELH---GDFDWAVKLYERCLIVCANYPDYWMRYADFMEAKGGREIANYSLDRATEIYLKSVPAIHLFnAR 150
Cdd:COG2956    74 DRAEALLELAQDYlkaGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL-AE 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995151721 151 FKEQIGDVLAARAAYiHRCKETDSDFVENVISKANMEKRLGNMESAFSIYKealeiaAAEEKQPALPILYVHFSRLkFMS 230
Cdd:COG2956   153 LYLEQGDYDEAIEAL-EKALKLDPDCARALLLLAELYLEQGDYEEAIAALE------RALEQDPDYLPALPRLAEL-YEK 224

                         170       180
                  ....*....|....*....|....*
gi 1995151721 231 TNDVDAARVVLIDGIRTLPQNKLLL 255
Cdd:COG2956   225 LGDPEEALELLRKALELDPSDDLLL 249
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 68-165 6.01e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.06  E-value: 6.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995151721  68 LDANQLQNW----HAYLDfielHGDFDWAVKLYERCLIVCANYPDYWMRYADFMEAKGGREIANYSLDRATEIYLKSVPA 143
Cdd:COG4235    12 ANPNDAEGWlllgRAYLR----LGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87

                          90       100
                  ....*....|....*....|..
gi 1995151721 144 iHLFNARFKEQIGDVLAARAAY 165
Cdd:COG4235    88 -LYLLGLAAFQQGDYAEAIAAW 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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