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Conserved domains on  [gi|1992390111|gb|QRY22858|]
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lipoate--protein ligase family protein [Halobacterium sp. GSL-19]

Protein Classification

biotin/lipoate A/B protein ligase family protein( domain architecture ID 10000572)

biotin/lipoate A/B protein ligase family protein is responsible for attaching biotin and lipoic acid to a specific lysine at the active site of biotin and lipoate-dependent enzymes, respectively

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
9-266 4.46e-72

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


:

Pssm-ID: 439865  Cd Length: 246  Bit Score: 221.26  E-value: 4.46e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111   9 RLIREDTRPGPMQMALDEIAAQTAADG-GPRTVRVYTwTPDTLSMGYRQATDS-VDWAAAADAGIDVTRRQTGGGGIYHD 86
Cdd:COG0095     1 RLIDSGSTDPAFNLALDEALLEEVAEGeDPPTLRLWR-NPPTVVIGRFQNVLPeVNLEYVEEHGIPVVRRISGGGAVYHD 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111  87 AHaDISYSIVAPADELPGDLMDTYELLCTPVFDAFDRLGIDARFTdteqpalhqpacylralnPAHDIVAGdpGRKISGN 166
Cdd:COG0095    80 PG-NLNYSLILPEDDVPLSIEESYRKLLEPILEALRKLGVDAEFS------------------GRNDIVVD--GRKISGN 138
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111 167 AQYRRADAVIQHGSLSFALDAERHLSVFSDP-----DTTPAAFREHVTTIEAQAG--VDRADAVTAVERALGEWAD-ADE 238
Cdd:COG0095   139 AQRRRKGAVLHHGTLLVDGDLEKLAKVLRVPyeklrDKGIKSVRSRVTNLSELLGtdITREEVKEALLEAFAEVLGvLEP 218
                         250       260
                  ....*....|....*....|....*...
gi 1992390111 239 GEWTDAELARARDLAAEKYAADAWVRDR 266
Cdd:COG0095   219 GELTDEELEAAEELAEEKYSSWEWNYGR 246
 
Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
9-266 4.46e-72

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


Pssm-ID: 439865  Cd Length: 246  Bit Score: 221.26  E-value: 4.46e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111   9 RLIREDTRPGPMQMALDEIAAQTAADG-GPRTVRVYTwTPDTLSMGYRQATDS-VDWAAAADAGIDVTRRQTGGGGIYHD 86
Cdd:COG0095     1 RLIDSGSTDPAFNLALDEALLEEVAEGeDPPTLRLWR-NPPTVVIGRFQNVLPeVNLEYVEEHGIPVVRRISGGGAVYHD 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111  87 AHaDISYSIVAPADELPGDLMDTYELLCTPVFDAFDRLGIDARFTdteqpalhqpacylralnPAHDIVAGdpGRKISGN 166
Cdd:COG0095    80 PG-NLNYSLILPEDDVPLSIEESYRKLLEPILEALRKLGVDAEFS------------------GRNDIVVD--GRKISGN 138
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111 167 AQYRRADAVIQHGSLSFALDAERHLSVFSDP-----DTTPAAFREHVTTIEAQAG--VDRADAVTAVERALGEWAD-ADE 238
Cdd:COG0095   139 AQRRRKGAVLHHGTLLVDGDLEKLAKVLRVPyeklrDKGIKSVRSRVTNLSELLGtdITREEVKEALLEAFAEVLGvLEP 218
                         250       260
                  ....*....|....*....|....*...
gi 1992390111 239 GEWTDAELARARDLAAEKYAADAWVRDR 266
Cdd:COG0095   219 GELTDEELEAAEELAEEKYSSWEWNYGR 246
LplA cd16443
lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide ...
8-230 9.11e-44

lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.


Pssm-ID: 319742  Cd Length: 209  Bit Score: 147.40  E-value: 9.11e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111   8 WRLIREDTRPGPMQMALDEIAAQTAAdgGPRTVRVYTWTPD-TLSMGYRQATDS-VDWAAAADAGIDVTRRQTGGGGIYH 85
Cdd:cd16443     1 MRLIDSSGDPPAENLALDEALLRSVA--APPTLRLYLWQNPpTVVIGRFQNPLEeVNLEYAEEDGIPVVRRPSGGGAVFH 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111  86 DAhADISYSIVAPADelPGDLMDTYELLCTPVFDAFDRLGIDARFtdteqpalhqpacylrALNPAHDIVAGdpGRKISG 165
Cdd:cd16443    79 DL-GNLNYSLILPKE--HPSIDESYRALSQPVIKALRKLGVEAEF----------------GGVGRNDLVVG--GKKISG 137
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1992390111 166 NAQYRRADAVIQHGSLSFALDAERHLSVFSDP-----DTTPAAFREHVTTIEAQAG--VDRADAVTAVERAL 230
Cdd:cd16443   138 SAQRRTKGRILHHGTLLVDVDLEKLARVLNVPyeklkSKGPKSVRSRVTNLSELLGrdITVEEVKNALLEAF 209
lipoyltrans TIGR00545
lipoyltransferase and lipoate-protein ligase; One member of this group of proteins is bovine ...
34-200 1.02e-12

lipoyltransferase and lipoate-protein ligase; One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair]


Pssm-ID: 161920 [Multi-domain]  Cd Length: 324  Bit Score: 66.77  E-value: 1.02e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111  34 DGGPRTVRVYTW-TPDTLSMGYRQAT-DSVDWAAAADAGIDVTRRQTGGGGIYHDAhADISYSIVAPADelpGDLMDTYE 111
Cdd:TIGR00545  26 PKTQRGKVLLFWqNANTIVIGRNQNTwAEVNLKELEEDNVNLFRRFSGGGAVFHDL-GNICFSFITPKD---GKEFENAK 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111 112 LLCTPVFDAFDRLGIDARFTdteqpalhqpacyLRalnpaHDIVAGdpGRKISGNAQYRRADAVIQHGSLSFALDAErHL 191
Cdd:TIGR00545 102 IFTRNVIKALNSLGVEAELS-------------GR-----NDLVVD--GRKISGSAYYITKDRGFHHGTLLFDADLS-KL 160

                  ....*....
gi 1992390111 192 SVFSDPDTT 200
Cdd:TIGR00545 161 AKYLNVDKT 169
BPL_LplA_LipB pfam03099
Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, ...
70-181 6.93e-06

Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organizm probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyzes the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes. The unusual biosynthesis pathway of lipoic acid is mechanistically intertwined with attachment of the cofactor.


Pssm-ID: 427135  Cd Length: 132  Bit Score: 44.74  E-value: 6.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111  70 GIDVTRRQTGGGG----IYHDAHADISYSIVAPADELPGDLMDTYELLCTPVFDAFDRLGIDArftdteqPALHQPACYL 145
Cdd:pfam03099  24 GVVVVRRQTGGRGrggnVWHSPKGCLTYSLLLSKEHPNVDPSVLEFYVLELVLAVLEALGLYK-------PGISGIPCFV 96
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1992390111 146 RALNpahDIVAGdpGRKISGNAQYRRADAVIQHGSL 181
Cdd:pfam03099  97 KWPN---DLYVN--GRKLAGILQRSTRGGTLHHGVI 127
 
Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
9-266 4.46e-72

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


Pssm-ID: 439865  Cd Length: 246  Bit Score: 221.26  E-value: 4.46e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111   9 RLIREDTRPGPMQMALDEIAAQTAADG-GPRTVRVYTwTPDTLSMGYRQATDS-VDWAAAADAGIDVTRRQTGGGGIYHD 86
Cdd:COG0095     1 RLIDSGSTDPAFNLALDEALLEEVAEGeDPPTLRLWR-NPPTVVIGRFQNVLPeVNLEYVEEHGIPVVRRISGGGAVYHD 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111  87 AHaDISYSIVAPADELPGDLMDTYELLCTPVFDAFDRLGIDARFTdteqpalhqpacylralnPAHDIVAGdpGRKISGN 166
Cdd:COG0095    80 PG-NLNYSLILPEDDVPLSIEESYRKLLEPILEALRKLGVDAEFS------------------GRNDIVVD--GRKISGN 138
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111 167 AQYRRADAVIQHGSLSFALDAERHLSVFSDP-----DTTPAAFREHVTTIEAQAG--VDRADAVTAVERALGEWAD-ADE 238
Cdd:COG0095   139 AQRRRKGAVLHHGTLLVDGDLEKLAKVLRVPyeklrDKGIKSVRSRVTNLSELLGtdITREEVKEALLEAFAEVLGvLEP 218
                         250       260
                  ....*....|....*....|....*...
gi 1992390111 239 GEWTDAELARARDLAAEKYAADAWVRDR 266
Cdd:COG0095   219 GELTDEELEAAEELAEEKYSSWEWNYGR 246
LplA cd16443
lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide ...
8-230 9.11e-44

lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.


Pssm-ID: 319742  Cd Length: 209  Bit Score: 147.40  E-value: 9.11e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111   8 WRLIREDTRPGPMQMALDEIAAQTAAdgGPRTVRVYTWTPD-TLSMGYRQATDS-VDWAAAADAGIDVTRRQTGGGGIYH 85
Cdd:cd16443     1 MRLIDSSGDPPAENLALDEALLRSVA--APPTLRLYLWQNPpTVVIGRFQNPLEeVNLEYAEEDGIPVVRRPSGGGAVFH 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111  86 DAhADISYSIVAPADelPGDLMDTYELLCTPVFDAFDRLGIDARFtdteqpalhqpacylrALNPAHDIVAGdpGRKISG 165
Cdd:cd16443    79 DL-GNLNYSLILPKE--HPSIDESYRALSQPVIKALRKLGVEAEF----------------GGVGRNDLVVG--GKKISG 137
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1992390111 166 NAQYRRADAVIQHGSLSFALDAERHLSVFSDP-----DTTPAAFREHVTTIEAQAG--VDRADAVTAVERAL 230
Cdd:cd16443   138 SAQRRTKGRILHHGTLLVDVDLEKLARVLNVPyeklkSKGPKSVRSRVTNLSELLGrdITVEEVKNALLEAF 209
lipoyltrans TIGR00545
lipoyltransferase and lipoate-protein ligase; One member of this group of proteins is bovine ...
34-200 1.02e-12

lipoyltransferase and lipoate-protein ligase; One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair]


Pssm-ID: 161920 [Multi-domain]  Cd Length: 324  Bit Score: 66.77  E-value: 1.02e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111  34 DGGPRTVRVYTW-TPDTLSMGYRQAT-DSVDWAAAADAGIDVTRRQTGGGGIYHDAhADISYSIVAPADelpGDLMDTYE 111
Cdd:TIGR00545  26 PKTQRGKVLLFWqNANTIVIGRNQNTwAEVNLKELEEDNVNLFRRFSGGGAVFHDL-GNICFSFITPKD---GKEFENAK 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111 112 LLCTPVFDAFDRLGIDARFTdteqpalhqpacyLRalnpaHDIVAGdpGRKISGNAQYRRADAVIQHGSLSFALDAErHL 191
Cdd:TIGR00545 102 IFTRNVIKALNSLGVEAELS-------------GR-----NDLVVD--GRKISGSAYYITKDRGFHHGTLLFDADLS-KL 160

                  ....*....
gi 1992390111 192 SVFSDPDTT 200
Cdd:TIGR00545 161 AKYLNVDKT 169
BPL_LplA_LipB pfam03099
Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, ...
70-181 6.93e-06

Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organizm probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyzes the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes. The unusual biosynthesis pathway of lipoic acid is mechanistically intertwined with attachment of the cofactor.


Pssm-ID: 427135  Cd Length: 132  Bit Score: 44.74  E-value: 6.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1992390111  70 GIDVTRRQTGGGG----IYHDAHADISYSIVAPADELPGDLMDTYELLCTPVFDAFDRLGIDArftdteqPALHQPACYL 145
Cdd:pfam03099  24 GVVVVRRQTGGRGrggnVWHSPKGCLTYSLLLSKEHPNVDPSVLEFYVLELVLAVLEALGLYK-------PGISGIPCFV 96
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1992390111 146 RALNpahDIVAGdpGRKISGNAQYRRADAVIQHGSL 181
Cdd:pfam03099  97 KWPN---DLYVN--GRKLAGILQRSTRGGTLHHGVI 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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