|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-343 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 698.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00119 38 LGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00119 118 VILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00119 198 LLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00119 278 AYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 357
|
330 340
....*....|....*....|...
gi 19908552 321 SYFT*ILI*FPLAAILENKILKL 343
Cdd:MTH00119 358 LYFTILLILFPLLGALENKMLNY 380
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-337 |
4.26e-126 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 366.81 E-value: 4.26e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY-----LNke 75
Cdd:COG1290 46 ALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN-- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 76 tWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIA 154
Cdd:COG1290 124 -WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 155 GLTLVHLTFLHETGSNNPLGI----PSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNllGDPENFTPANPLSTPP 230
Cdd:COG1290 203 ALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPA 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 231 HIKPEWYF*FAYAILRSIP--NKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVe 308
Cdd:COG1290 281 HIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP- 359
|
330 340
....*....|....*....|....*....
gi 19908552 309 hPFIIIGQLASLSYFT*ILI*FPLAAILE 337
Cdd:COG1290 360 -IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-170 |
3.56e-82 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 248.05 E-value: 3.56e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLN--KETWN 78
Cdd:cd00284 29 LGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 79 IGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTL 158
Cdd:cd00284 109 IGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVI 188
|
170
....*....|..
gi 19908552 159 VHLTFLHETGSN 170
Cdd:cd00284 189 LHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-168 |
4.85e-71 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 219.18 E-value: 4.85e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYG--SYLNKETWN 78
Cdd:pfam00033 20 LGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 79 IGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTL 158
Cdd:pfam00033 100 IGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILML 179
|
170
....*....|
gi 19908552 159 VHLTFLHETG 168
Cdd:pfam00033 180 LHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
200-294 |
1.26e-11 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 62.12 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 200 LILLVSLALFSPNLLGDPenftpANPLSTPPHIKPEWYF*FAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSM 279
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122
|
90
....*....|....*...
gi 19908552 280 TF-RPLSQI--LFWTLVA 294
Cdd:TIGR01156 123 PFrRPVATTvfLFGTVVA 140
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-343 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 698.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00119 38 LGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00119 118 VILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00119 198 LLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00119 278 AYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 357
|
330 340
....*....|....*....|...
gi 19908552 321 SYFT*ILI*FPLAAILENKILKL 343
Cdd:MTH00119 358 LYFTILLILFPLLGALENKMLNY 380
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-342 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 643.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00100 37 LGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIG 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00100 117 IILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVH 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00100 197 LLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLF 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00100 277 AYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASI 356
|
330 340
....*....|....*....|..
gi 19908552 321 SYFT*ILI*FPLAAILENKILK 342
Cdd:MTH00100 357 LYFLIILILMPIASLIENNLLK 378
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-342 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 642.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00131 37 LGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIG 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00131 117 VVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILH 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00131 197 LLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLF 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00131 277 AYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASV 356
|
330 340
....*....|....*....|..
gi 19908552 321 SYFT*ILI*FPLAAILENKILK 342
Cdd:MTH00131 357 LYFSLFLVLMPLAGWLENKALE 378
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-343 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 617.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00074 38 LGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00074 118 VILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00074 198 LLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLF 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00074 278 AYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASI 357
|
330 340
....*....|....*....|...
gi 19908552 321 SYFT*ILI*FPLAAILENKILKL 343
Cdd:MTH00074 358 LYFLLFIIIIPLTGWLENKLLKW 380
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-332 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 593.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00191 34 LGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVG 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00191 114 VILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIH 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00191 194 LLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLF 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00191 274 AYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSF 353
|
330
....*....|..
gi 19908552 321 SYFT*ILI*FPL 332
Cdd:MTH00191 354 LYFFLFLLLFPL 365
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-330 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 577.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00156 27 LGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSG 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00156 107 VIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIH 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00156 187 LLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLF 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00156 267 AYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTI 346
|
330
....*....|
gi 19908552 321 SYFT*ILI*F 330
Cdd:MTH00156 347 LYFLYFIINP 356
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-341 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 571.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00145 38 LGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00145 118 VTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00145 198 LLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLF 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00145 278 AYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTV 357
|
330 340
....*....|....*....|.
gi 19908552 321 SYFT*ILI*fPLAAILENKIL 341
Cdd:MTH00145 358 LYFLFFLIL-PLVQKLWDNIL 377
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-341 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 570.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00034 37 LGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIG 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00034 117 VILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIH 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00034 197 LLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLF 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00034 277 AYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASV 356
|
330 340
....*....|....*....|.
gi 19908552 321 SYFT*ILI*FPLAAILENKIL 341
Cdd:MTH00034 357 LYFSLFLFFFPLISYLENKLI 377
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-342 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 535.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00016 38 LGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00016 118 VILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00016 198 LLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLW 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00016 278 AYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTV 357
|
330 340
....*....|....*....|..
gi 19908552 321 SYFT*ILI*FPLAAILENKILK 342
Cdd:MTH00016 358 FYFF-YFMINPLLMKLWDKLLK 378
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-343 |
3.44e-173 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 486.14 E-value: 3.44e-173
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00053 38 LGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00053 118 VLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00053 198 LIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLF 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00053 278 AYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASI 357
|
330 340
....*....|....*....|...
gi 19908552 321 SYFT*ILI*FPLAAILENKILKL 343
Cdd:MTH00053 358 FYFAYFLILMPLAGYLENKLLKL 380
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-342 |
1.02e-171 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 482.28 E-value: 1.02e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00022 36 LGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00022 116 VVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVH 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00022 196 LIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLF 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00022 276 AYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSF 355
|
330 340
....*....|....*....|..
gi 19908552 321 SYFT*ILI*FPLAAILENKILK 342
Cdd:MTH00022 356 FYFFYFLVLIPLLGELENQLLF 377
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-342 |
1.54e-160 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 453.99 E-value: 1.54e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00224 38 LGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00224 118 VILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00224 198 IMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLW 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00224 278 MYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTI 357
|
330 340
....*....|....*....|..
gi 19908552 321 SYFT*ILI*fPLAAILENKILK 342
Cdd:MTH00224 358 LYFSYFIIS-PAISKLWDDLLN 378
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-338 |
3.31e-128 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 371.96 E-value: 3.31e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00033 34 LCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVG 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00033 114 VLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAH 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFS--PNLLGDPENFTPANPLSTPPHIKPEWYF 238
Cdd:MTH00033 194 LLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYF 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 239 *FAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPV-EHPFIIIGQL 317
Cdd:MTH00033 274 LFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRI 353
|
330 340
....*....|....*....|.
gi 19908552 318 ASLSYFT*ILI*FPLAAILEN 338
Cdd:MTH00033 354 ATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-337 |
4.26e-126 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 366.81 E-value: 4.26e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY-----LNke 75
Cdd:COG1290 46 ALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN-- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 76 tWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIA 154
Cdd:COG1290 124 -WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 155 GLTLVHLTFLHETGSNNPLGI----PSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNllGDPENFTPANPLSTPP 230
Cdd:COG1290 203 ALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPA 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 231 HIKPEWYF*FAYAILRSIP--NKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVe 308
Cdd:COG1290 281 HIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP- 359
|
330 340
....*....|....*....|....*....
gi 19908552 309 hPFIIIGQLASLSYFT*ILI*FPLAAILE 337
Cdd:COG1290 360 -IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-330 |
7.71e-112 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 329.21 E-value: 7.71e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00086 26 LGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00086 106 LTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFH 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVsLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*F 240
Cdd:MTH00086 186 LIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFII-FSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLF 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 241 AYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSkqrSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASL 320
Cdd:MTH00086 265 AYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSF 341
|
330
....*....|
gi 19908552 321 SYFT*ILI*F 330
Cdd:MTH00086 342 IYFFLILLML 351
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-321 |
4.10e-89 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 271.09 E-value: 4.10e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIG 80
Cdd:MTH00046 28 LSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 160
Cdd:MTH00046 108 FILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVH 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 161 LTFLHETGSNNPLGIPSD-CDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF* 239
Cdd:MTH00046 188 LFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFL 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 240 FAYAILRSIPNKLGGvLALAASVLVLFLMPllhtSKQRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLAS 319
Cdd:MTH00046 268 AFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFS 342
|
..
gi 19908552 320 LS 321
Cdd:MTH00046 343 VL 344
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-170 |
3.56e-82 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 248.05 E-value: 3.56e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLN--KETWN 78
Cdd:cd00284 29 LGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 79 IGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTL 158
Cdd:cd00284 109 IGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVI 188
|
170
....*....|..
gi 19908552 159 VHLTFLHETGSN 170
Cdd:cd00284 189 LHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-168 |
4.85e-71 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 219.18 E-value: 4.85e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 1 LGICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYG--SYLNKETWN 78
Cdd:pfam00033 20 LGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 79 IGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTL 158
Cdd:pfam00033 100 IGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILML 179
|
170
....*....|
gi 19908552 159 VHLTFLHETG 168
Cdd:pfam00033 180 LHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
171-318 |
4.57e-58 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 184.39 E-value: 4.57e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 171 NPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYF*FAYAILRSIPN 250
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19908552 251 KLGGVLALAASVLVLFLMPLLHTSKQRSmTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLA 318
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
222-322 |
7.70e-49 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 159.18 E-value: 7.70e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 222 PANPLSTPPHIKPEWYF*FAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWTLVANLLILTW 301
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 19908552 302 VGSQPVEHPFIIIGQLASLSY 322
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
52-217 |
9.25e-46 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 153.55 E-value: 9.25e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 52 SFFFICIYFHIGRGIYYGSYLNKE--TWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 129
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 130 GGFSVDNPTLTRFFALHF-LLPFVIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLAL 208
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 19908552 209 FSPNLLGDP 217
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
3-173 |
4.45e-34 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 124.82 E-value: 4.45e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 3 ICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKE--TWNIG 80
Cdd:PRK03735 50 FCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVG 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLV 159
Cdd:PRK03735 130 VLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLA 209
|
170
....*....|....
gi 19908552 160 HLTFLHETGSNNPL 173
Cdd:PRK03735 210 HFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
3-173 |
6.65e-30 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 113.66 E-value: 6.65e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 3 ICLVTQIVTGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKE--TWNIG 80
Cdd:CHL00070 42 TCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTG 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLV 159
Cdd:CHL00070 122 VVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLM 201
|
170
....*....|....
gi 19908552 160 HLTFLHETGSNNPL 173
Cdd:CHL00070 202 HFLMIRKQGISGPL 215
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
193-294 |
1.18e-12 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 65.02 E-value: 1.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 193 ILGfvlMLILLVSLALFSPNLLGDPenftpANPLSTPPHIKPEWYF*FAYAILRSIPNKLGGVLALAASVLVLFLMPLL- 271
Cdd:CHL00058 44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115
|
90 100
....*....|....*....|....*
gi 19908552 272 HTSKQRSMTFRPLSQI--LFWTLVA 294
Cdd:CHL00058 116 NVNKFQNPFRRPVATTvfLIGTAVA 140
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
202-303 |
2.65e-12 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 64.04 E-value: 2.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 202 LLVSLALFSPNLLGDPenftpANPLSTPPHIKPEWYF*FAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTF 281
Cdd:COG5679 51 LCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPF 125
|
90 100
....*....|....*....|...
gi 19908552 282 -RPLSQILFwtLVANLLILtWVG 303
Cdd:COG5679 126 rRPVATAVF--LFGTLVTL-WLG 145
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
200-294 |
1.26e-11 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 62.12 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908552 200 LILLVSLALFSPNLLGDPenftpANPLSTPPHIKPEWYF*FAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSM 279
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122
|
90
....*....|....*...
gi 19908552 280 TF-RPLSQI--LFWTLVA 294
Cdd:TIGR01156 123 PFrRPVATTvfLFGTVVA 140
|
|
| |
