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Conserved domains on  [gi|1988229290|gb|QRV07350|]
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cytochrome b, partial (mitochondrion) [Rhamdia sp. l-C JA-2021]

Protein Classification

cytochrome b( domain architecture ID 11475912)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 763.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   1 HPLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGA 80
Cdd:MTH00131    8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  81 SFFFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGG 160
Cdd:MTH00131   88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 161 FSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSP 240
Cdd:MTH00131  168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWT 320
Cdd:MTH00131  248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1988229290 321 LVADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLILNPLAGWLENKLI 370
Cdd:MTH00131  328 LVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKAL 377
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 763.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   1 HPLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGA 80
Cdd:MTH00131    8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  81 SFFFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGG 160
Cdd:MTH00131   88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 161 FSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSP 240
Cdd:MTH00131  168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWT 320
Cdd:MTH00131  248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1988229290 321 LVADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLILNPLAGWLENKLI 370
Cdd:MTH00131  328 LVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKAL 377
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-366 1.52e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 376.82  E-value: 1.52e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   9 NSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGASFFFICIY 88
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  89 LHIGRGLYYGSylYKE----TWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGGFSVD 164
Cdd:COG1290   105 LHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 165 KATLTRFFAFH-FLLPFLIVAATAIHALFLHETGSNNPAG----LNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFS 239
Cdd:COG1290   183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 240 PNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFL 317
Cdd:COG1290   263 PI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTAL 340

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1988229290 318 FWTLVADLFILTWIGGMPVehPFIIIGQIASVLYFSLFLILNPLAGWLE 366
Cdd:COG1290   341 GVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 5.78e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 266.16  E-value: 5.78e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   2 PLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  82 FFFICIYLHIGRGLYYGSY--LYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1988229290 160 GFSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 3.89e-82

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.45  E-value: 3.89e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  11 LIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGASFFFICIYLH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  91 IGRGLYYG--SYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGGFSVDKATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1988229290 169 TRFFAFHFLLPFLIVAATAIHALFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 222-323 3.61e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 63.66  E-value: 3.61e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 222 LLGFLILLVALASLaffSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLH 301
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100
                  ....*....|....*....|....*
gi 1988229290 302 T-SKQQGLTFRPIAQ--FLFWTLVA 323
Cdd:TIGR01156 116 NvNKFQNPFRRPVATtvFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 763.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   1 HPLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGA 80
Cdd:MTH00131    8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  81 SFFFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGG 160
Cdd:MTH00131   88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 161 FSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSP 240
Cdd:MTH00131  168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWT 320
Cdd:MTH00131  248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1988229290 321 LVADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLILNPLAGWLENKLI 370
Cdd:MTH00131  328 LVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKAL 377
CYTB MTH00119
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 713.21  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   1 HPLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGA 80
Cdd:MTH00119    9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  81 SFFFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGG 160
Cdd:MTH00119   89 SMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 161 FSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSP 240
Cdd:MTH00119  169 FSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWT 320
Cdd:MTH00119  249 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWT 328

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1988229290 321 LVADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLILNPLAGWLENKLI 370
Cdd:MTH00119  329 LVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKML 378
CYTB MTH00074
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 698.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   1 HPLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGA 80
Cdd:MTH00074    9 HPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  81 SFFFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGG 160
Cdd:MTH00074   89 SFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 161 FSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSP 240
Cdd:MTH00074  169 FSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWT 320
Cdd:MTH00074  249 NLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWL 328

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1988229290 321 LVADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLILNPLAGWLENKLI 370
Cdd:MTH00074  329 LVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLL 378
CYTB MTH00100
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 685.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   1 HPLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  81 SFFFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 161 FSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWT 320
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1988229290 321 LVADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLILNPLAGWLENKLI 370
Cdd:MTH00100  328 LVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00191
cytochrome b; Provisional
 1-361 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 656.60  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   1 HPLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGA 80
Cdd:MTH00191    5 HPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  81 SFFFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGG 160
Cdd:MTH00191   85 SFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 161 FSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSP 240
Cdd:MTH00191  165 FSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSP 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWT 320
Cdd:MTH00191  245 NLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWL 324

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1988229290 321 LVADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLILNPL 361
Cdd:MTH00191  325 WVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 4-358 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 628.74  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   4 LKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGASFF 83
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  84 FICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGGFSV 163
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 164 DKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSPNLL 243
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 244 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWTLVA 323
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1988229290 324 DLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLIL 358
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00034
cytochrome b; Validated
 1-370 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 613.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   1 HPLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGA 80
Cdd:MTH00034    8 HPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  81 SFFFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGG 160
Cdd:MTH00034   88 SLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 161 FSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSP 240
Cdd:MTH00034  168 FSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWT 320
Cdd:MTH00034  248 TALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWL 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1988229290 321 LVADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLILNPLAGWLENKLI 370
Cdd:MTH00034  328 LIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00145
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 599.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   1 HPLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGA 80
Cdd:MTH00145    9 HPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  81 SFFFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGG 160
Cdd:MTH00145   89 SFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 161 FSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSP 240
Cdd:MTH00145  169 FSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWT 320
Cdd:MTH00145  249 NLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWI 328

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1988229290 321 LVADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLILnPLAGWLENKLI 370
Cdd:MTH00145  329 FVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-370 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 560.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   1 HPLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGA 80
Cdd:MTH00016    9 HPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  81 SFFFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGG 160
Cdd:MTH00016   89 SFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 161 FSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSP 240
Cdd:MTH00016  169 FSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWT 320
Cdd:MTH00016  249 NILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWL 328

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1988229290 321 LVADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLIlNPLAGWLENKLI 370
Cdd:MTH00016  329 LVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMI-NPLLMKLWDKLL 377
CYTB MTH00022
cytochrome b; Validated
 1-370 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 518.87  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   1 HPLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGA 80
Cdd:MTH00022    7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  81 SFFFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGG 160
Cdd:MTH00022   87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 161 FSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSP 240
Cdd:MTH00022  167 FSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAP 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWT 320
Cdd:MTH00022  247 NLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWF 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1988229290 321 LVADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLILNPLAGWLENKLI 370
Cdd:MTH00022  327 LIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLL 376
CYTB MTH00053
cytochrome b; Provisional
 2-370 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 511.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   2 PLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGAS 81
Cdd:MTH00053   10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  82 FFFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGGF 161
Cdd:MTH00053   90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 162 SVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSPN 241
Cdd:MTH00053  170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 242 LLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWTL 321
Cdd:MTH00053  250 SLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFL 329

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1988229290 322 VADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLILNPLAGWLENKLI 370
Cdd:MTH00053  330 VGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLL 378
CYTB MTH00224
cytochrome b; Provisional
 1-370 2.51e-177

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 497.52  E-value: 2.51e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   1 HPLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGA 80
Cdd:MTH00224    9 HPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  81 SFFFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGG 160
Cdd:MTH00224   89 SMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 161 FSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSP 240
Cdd:MTH00224  169 FAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 241 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWT 320
Cdd:MTH00224  249 NLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWL 328

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1988229290 321 LVADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFlILNPLAGWLENKLI 370
Cdd:MTH00224  329 LVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYF-IISPAISKLWDDLL 377
CYTB MTH00033
cytochrome b; Provisional
 9-367 1.66e-140

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 404.32  E-value: 1.66e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   9 NSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGASFFFICIY 88
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  89 LHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGGFSVDKATL 168
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 169 TRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFS--PNLLGDP 246
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 247 ENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWTLVADLF 326
Cdd:MTH00033  253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1988229290 327 ILTWIGGMPV-EHPFIIIGQIASVLYFSLFLILNPLAGWLEN 367
Cdd:MTH00033  333 ILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-366 1.52e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 376.82  E-value: 1.52e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   9 NSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGASFFFICIY 88
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  89 LHIGRGLYYGSylYKE----TWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGGFSVD 164
Cdd:COG1290   105 LHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 165 KATLTRFFAFH-FLLPFLIVAATAIHALFLHETGSNNPAG----LNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFS 239
Cdd:COG1290   183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 240 PNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFL 317
Cdd:COG1290   263 PI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTAL 340

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1988229290 318 FWTLVADLFILTWIGGMPVehPFIIIGQIASVLYFSLFLILNPLAGWLE 366
Cdd:COG1290   341 GVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 8-358 1.30e-119

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 350.01  E-value: 1.30e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   8 NNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGASFFFICI 87
Cdd:MTH00086    4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  88 YLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGGFSVDKAT 167
Cdd:MTH00086   84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 168 LTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVaLASLAFFSPNLLGDPE 247
Cdd:MTH00086  164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPE 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 248 NFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQqglTFRPIAQFLFWTLVADLFI 327
Cdd:MTH00086  243 MFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVI 319

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1988229290 328 LTWIGGMPVEHPFIIIGQIASVLYFSLFLIL 358
Cdd:MTH00086  320 LSWLGQCLVEYPFLFLSQIFSFIYFFLILLM 350
CYTB MTH00046
cytochrome b; Validated
 3-357 6.07e-91

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 276.86  E-value: 6.07e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   3 LLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGASF 82
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  83 FFICIYLHIGRGLYYGSYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGGFS 162
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 163 VDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSNNPAGL-NSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSPN 241
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 242 LLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLFSILVLMLVPllhtSKQQGLTFRPIAQFLFWTL 321
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLI 315

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1988229290 322 VADLFILTWIGGMPVEHPFIIIGQIASVLYFSLFLI 357
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 5.78e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 266.16  E-value: 5.78e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290   2 PLLKLTNNSLIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  82 FFFICIYLHIGRGLYYGSY--LYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1988229290 160 GFSVDKATLTRFFAFHFLLPFLIVAATAIHALFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 3.89e-82

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.45  E-value: 3.89e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  11 LIDLPVPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGASFFFICIYLH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  91 IGRGLYYG--SYLYKETWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGGFSVDKATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1988229290 169 TRFFAFHFLLPFLIVAATAIHALFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 200-347 1.74e-53

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 173.60  E-value: 1.74e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 200 NPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAFFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 279
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1988229290 280 KLGGVLALLFSILVLMLVPLLHTSKQQGlTFRPIAQFLFWTLVADLFILTWIGGMPVEHPFIIIGQIA 347
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
81-246 1.15e-50

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 167.03  E-value: 1.15e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  81 SFFFICIYLHIGRGLYYGSYLYKE--TWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLW 158
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 159 GGFSVDKATLTRFFAFHF-LLPFLIVAATAIHALFLHETGSNNPAGLNSNPDKIPFHPYFSYKDLLGFLILLVALASLAF 237
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1988229290 238 FSPNLLGDP 246
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
251-351 6.12e-47

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.94  E-value: 6.12e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 251 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPIAQFLFWTLVADLFILTW 330
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1988229290 331 IGGMPVEHPFIIIGQIASVLY 351
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 26-201 2.36e-37

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 134.07  E-value: 2.36e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  26 FGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE- 104
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 105 -TWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGGFSVDKATLTRFFAFH-FLLPFLI 182
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1988229290 183 VAATAIHALFLHETGSNNP 201
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 16-201 2.59e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 120.60  E-value: 2.59e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  16 VPSNISAWWTFGSTLLLCLIVQILTGLFLAMHYTSDISTAFSSVVHICRDVDYGWAIRNLHANGASFFFICIYLHIGRGL 95
Cdd:CHL00070   26 VPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVY 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290  96 YYGSYLYKE--TWNMGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDVLVQWLWGGFSVDKATLTRFFA 173
Cdd:CHL00070  106 LTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYS 185

                         170       180
                  ....*....|....*....|....*....
gi 1988229290 174 FH-FLLPFLIVAATAIHALFLHETGSNNP 201
Cdd:CHL00070  186 LHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 222-322 1.15e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 65.20  E-value: 1.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 222 LLGFLILLVALASLaffSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLH 301
Cdd:COG5679    45 ILGTIALCIGLAVL---DPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116

                          90       100
                  ....*....|....*....|....
gi 1988229290 302 T-SKQQGLTFRPIAQ--FLFWTLV 322
Cdd:COG5679   117 NvNKFQNPFRRPVATavFLFGTLV 140
petD CHL00058
cytochrome b6/f complex subunit IV
 222-323 1.45e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 65.02  E-value: 1.45e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 222 LLGFLILLVALASLAffsPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLL- 300
Cdd:CHL00058   44 ILGTIACNVGLAVLE---PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                          90       100
                  ....*....|....*....|....*
gi 1988229290 301 HTSKQQGLTFRPIAQ--FLFWTLVA 323
Cdd:CHL00058  116 NVNKFQNPFRRPVATtvFLIGTAVA 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 222-323 3.61e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 63.66  E-value: 3.61e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988229290 222 LLGFLILLVALASLaffSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLH 301
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100
                  ....*....|....*....|....*
gi 1988229290 302 T-SKQQGLTFRPIAQ--FLFWTLVA 323
Cdd:TIGR01156 116 NvNKFQNPFRRPVATtvFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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