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Conserved domains on  [gi|1983943827|gb|KAG3263295|]
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MYB proto-oncogene like 2, transcript variant X1 [Ictidomys tridecemlineatus]

Protein Classification

myb-related protein( domain architecture ID 13851054)

myb-related protein contains a SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain, binds DNA and functions as a transcription factor, such as human myb-related protein A that specifically recognizes the sequence 5'-YAAC[GT]G-3'

CATH:  1.20.58.1880
Gene Ontology:  GO:0006355|GO:0003700|GO:0003677
PubMed:  8882580
SCOP:  4000317

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Cmyb_C pfam09316
C-myb, C-terminal; Members of this family are predominantly found in the proto-oncogene c-myb ...
 453-596 2.35e-57

C-myb, C-terminal; Members of this family are predominantly found in the proto-oncogene c-myb and the viral transforming protein myb. Truncation of the domain results in 'activation' of c-myb and subsequent tumourigenesis.


:

Pssm-ID: 462753  Cd Length: 157  Bit Score: 192.19  E-value: 2.35e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827 453 FSPSQFLNFWNKQDTLELESPSLTSTPVCSQKVVVTTPLHRDKTPLHQK-HAAFVTPD-QKYSMDNTPHTPTPFKNALE- 529
Cdd:pfam09316   1 FSPSQFLNESSGQENLPLENPTLTSTPVCGQKVFLTTPLHKDQTPKYQKeNTGFRTPNiRRSILETTPRTPTPFKNALAa 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1983943827 530 ---KYGPLKPLPQTP-HLEEDLKEVLRSEAGIELIIEDDTRPEKQKRKPGlRRSPIKKVRKSLALDIVDED 596
Cdd:pfam09316  81 qekKYGPLKPLPQTPaHLEEDLQEVLKSEIGSDIEIGEDEKPWKQKIKQE-HRSPNKKVRKSLWLDDWDKE 150
PLN03091 super family cl33633
hypothetical protein; Provisional
 81-246 4.56e-30

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 124.32  E-value: 4.56e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827  81 LVKGPWTKEEDQKVIELVKKYGTKKWTLIAKhLKG--RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWA 158
Cdd:PLN03091   12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGlqRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827 159 EIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFlsDSKDCKPpvylLLELEDKDSHQsaQPAEGQENLMTSWPSASITIKEE 238
Cdd:PLN03091   91 QIAAQLPGRTDNEIKNLWNSCLKKKLRQRGI--DPNTHKP----LSEVENGEDKN--PPTDDKSDKASSVVSNELNLLKA 162


                  ....*...
gi 1983943827 239 EGSEGEAV 246
Cdd:PLN03091  163 DNSKPLAA 170
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 34-94 6.45e-20

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


:

Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 83.90  E-value: 6.45e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1983943827  34 WTHEEDEQLRALVRQFGQqDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKV 94
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGN-DWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
 
Name Accession Description Interval E-value
Cmyb_C pfam09316
C-myb, C-terminal; Members of this family are predominantly found in the proto-oncogene c-myb ...
 453-596 2.35e-57

C-myb, C-terminal; Members of this family are predominantly found in the proto-oncogene c-myb and the viral transforming protein myb. Truncation of the domain results in 'activation' of c-myb and subsequent tumourigenesis.


Pssm-ID: 462753  Cd Length: 157  Bit Score: 192.19  E-value: 2.35e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827 453 FSPSQFLNFWNKQDTLELESPSLTSTPVCSQKVVVTTPLHRDKTPLHQK-HAAFVTPD-QKYSMDNTPHTPTPFKNALE- 529
Cdd:pfam09316   1 FSPSQFLNESSGQENLPLENPTLTSTPVCGQKVFLTTPLHKDQTPKYQKeNTGFRTPNiRRSILETTPRTPTPFKNALAa 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1983943827 530 ---KYGPLKPLPQTP-HLEEDLKEVLRSEAGIELIIEDDTRPEKQKRKPGlRRSPIKKVRKSLALDIVDED 596
Cdd:pfam09316  81 qekKYGPLKPLPQTPaHLEEDLQEVLKSEIGSDIEIGEDEKPWKQKIKQE-HRSPNKKVRKSLWLDDWDKE 150
PLN03091 PLN03091
hypothetical protein; Provisional
 81-246 4.56e-30

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 124.32  E-value: 4.56e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827  81 LVKGPWTKEEDQKVIELVKKYGTKKWTLIAKhLKG--RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWA 158
Cdd:PLN03091   12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGlqRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827 159 EIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFlsDSKDCKPpvylLLELEDKDSHQsaQPAEGQENLMTSWPSASITIKEE 238
Cdd:PLN03091   91 QIAAQLPGRTDNEIKNLWNSCLKKKLRQRGI--DPNTHKP----LSEVENGEDKN--PPTDDKSDKASSVVSNELNLLKA 162


                  ....*...
gi 1983943827 239 EGSEGEAV 246
Cdd:PLN03091  163 DNSKPLAA 170
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 80-257 5.23e-28

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 118.74  E-value: 5.23e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827  80 DLVKGPWTKEEDQKVIELVKKYGTKKWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAE 159
Cdd:COG5147    17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWST 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827 160 IAKMLPGRTDNAVKNHWNSTIKRKVDTGGFL--SDSKDCKPPVYL-----LLELEDKDSHQSAQPAEGQENLMTSWPSAS 232
Cdd:COG5147    97 IADYKDRRTAQQCVERYVNTLEDLSSTHDSKlqRRNEFDKIDPFNensarRPDIYEDELLEREVNREASYRLRVPRVSKA 176

                         170       180
                  ....*....|....*....|....*
gi 1983943827 233 ITIKEEEGSEGEAVATAMSKEQEPV 257
Cdd:COG5147   177 DVKPREKGEENNPDIEDLQEMKELK 201
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 34-94 6.45e-20

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 83.90  E-value: 6.45e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1983943827  34 WTHEEDEQLRALVRQFGQqDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKV 94
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGN-DWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 86-144 4.15e-19

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 81.59  E-value: 4.15e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1983943827  86 WTKEEDQKVIELVKKYGtKKWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDR 144
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQ 58
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
83-131 2.41e-17

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 76.11  E-value: 2.41e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1983943827   83 KGPWTKEEDQKVIELVKKYGTKKWTLIAKHLKGRLGKQCRERWHNHLNP 131
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 85-129 6.76e-17

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 74.53  E-value: 6.76e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1983943827  85 PWTKEEDQKVIELVKKYGTKKWTLIAKHLKGRLGKQCRERWHNHL 129
Cdd:cd00167     1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
31-79 2.20e-14

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 67.63  E-value: 2.20e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1983943827   31 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNP 79
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 33-77 9.05e-14

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 65.67  E-value: 9.05e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1983943827  33 KWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 77
Cdd:cd00167     1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
Cmyb_C pfam09316
C-myb, C-terminal; Members of this family are predominantly found in the proto-oncogene c-myb ...
 453-596 2.35e-57

C-myb, C-terminal; Members of this family are predominantly found in the proto-oncogene c-myb and the viral transforming protein myb. Truncation of the domain results in 'activation' of c-myb and subsequent tumourigenesis.


Pssm-ID: 462753  Cd Length: 157  Bit Score: 192.19  E-value: 2.35e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827 453 FSPSQFLNFWNKQDTLELESPSLTSTPVCSQKVVVTTPLHRDKTPLHQK-HAAFVTPD-QKYSMDNTPHTPTPFKNALE- 529
Cdd:pfam09316   1 FSPSQFLNESSGQENLPLENPTLTSTPVCGQKVFLTTPLHKDQTPKYQKeNTGFRTPNiRRSILETTPRTPTPFKNALAa 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1983943827 530 ---KYGPLKPLPQTP-HLEEDLKEVLRSEAGIELIIEDDTRPEKQKRKPGlRRSPIKKVRKSLALDIVDED 596
Cdd:pfam09316  81 qekKYGPLKPLPQTPaHLEEDLQEVLKSEIGSDIEIGEDEKPWKQKIKQE-HRSPNKKVRKSLWLDDWDKE 150
PLN03091 PLN03091
hypothetical protein; Provisional
 81-246 4.56e-30

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 124.32  E-value: 4.56e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827  81 LVKGPWTKEEDQKVIELVKKYGTKKWTLIAKhLKG--RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWA 158
Cdd:PLN03091   12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGlqRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827 159 EIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFlsDSKDCKPpvylLLELEDKDSHQsaQPAEGQENLMTSWPSASITIKEE 238
Cdd:PLN03091   91 QIAAQLPGRTDNEIKNLWNSCLKKKLRQRGI--DPNTHKP----LSEVENGEDKN--PPTDDKSDKASSVVSNELNLLKA 162


                  ....*...
gi 1983943827 239 EGSEGEAV 246
Cdd:PLN03091  163 DNSKPLAA 170
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 80-257 5.23e-28

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 118.74  E-value: 5.23e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827  80 DLVKGPWTKEEDQKVIELVKKYGTKKWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAE 159
Cdd:COG5147    17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWST 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827 160 IAKMLPGRTDNAVKNHWNSTIKRKVDTGGFL--SDSKDCKPPVYL-----LLELEDKDSHQSAQPAEGQENLMTSWPSAS 232
Cdd:COG5147    97 IADYKDRRTAQQCVERYVNTLEDLSSTHDSKlqRRNEFDKIDPFNensarRPDIYEDELLEREVNREASYRLRVPRVSKA 176

                         170       180
                  ....*....|....*....|....*
gi 1983943827 233 ITIKEEEGSEGEAVATAMSKEQEPV 257
Cdd:COG5147   177 DVKPREKGEENNPDIEDLQEMKELK 201
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 83-198 3.93e-26

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 107.86  E-value: 3.93e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827  83 KGPWTKEEDQKVIELVKKYGTKKWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIA 161
Cdd:PLN03212   25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLlRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIA 104

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1983943827 162 KMLPGRTDNAVKNHWNSTIKRKVDTGGFlsDSKDCKP 198
Cdd:PLN03212  105 GRIPGRTDNEIKNYWNTHLRKKLLRQGI--DPQTHKP 139
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 34-94 6.45e-20

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 83.90  E-value: 6.45e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1983943827  34 WTHEEDEQLRALVRQFGQqDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKV 94
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGN-DWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 86-144 4.15e-19

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 81.59  E-value: 4.15e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1983943827  86 WTKEEDQKVIELVKKYGtKKWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDR 144
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQ 58
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
83-131 2.41e-17

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 76.11  E-value: 2.41e-17
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1983943827   83 KGPWTKEEDQKVIELVKKYGTKKWTLIAKHLKGRLGKQCRERWHNHLNP 131
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 83-129 2.91e-17

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 75.62  E-value: 2.91e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1983943827  83 KGPWTKEEDQKVIELVKKYGtKKWTLIAKHLKGRLGKQCRERWHNHL 129
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 85-129 6.76e-17

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 74.53  E-value: 6.76e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1983943827  85 PWTKEEDQKVIELVKKYGTKKWTLIAKHLKGRLGKQCRERWHNHL 129
Cdd:cd00167     1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 135-178 5.01e-16

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 72.15  E-value: 5.01e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1983943827 135 KSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNS 178
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
31-79 2.20e-14

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 67.63  E-value: 2.20e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1983943827   31 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNP 79
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 33-77 9.05e-14

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 65.67  E-value: 9.05e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1983943827  33 KWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 77
Cdd:cd00167     1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 138-177 5.78e-13

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 63.36  E-value: 5.78e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1983943827 138 WTEEEDRIICEAHKVLG-NRWAEIAKMLPGRTDNAVKNHWN 177
Cdd:cd00167     2 WTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWR 42
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
135-182 7.62e-13

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 63.40  E-value: 7.62e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1983943827  135 KSCWTEEEDRIICEAHKVLG-NRWAEIAKMLPGRTDNAVKNHWNSTIKR 182
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 31-77 1.15e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 62.52  E-value: 1.15e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1983943827  31 KVKWTHEEDEQLRALVRQFGQqDWKFLASHFPNRTDQQCQYRWLRVL 77
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN-RWKKIAKLLPGRTDNQCKNRWQNYL 46
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 138-189 2.27e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 53.85  E-value: 2.27e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1983943827 138 WTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGF 189
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPW 52
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 85-127 8.52e-08

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 49.10  E-value: 8.52e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1983943827  85 PWTKEEDQKVIELVKKYGTKKWTLIAKH---LKGRLGKQCRERWHN 127
Cdd:cd11660     2 KWTDEEDEALVEGVEKYGVGNWAKILKDyffVNNRTSVDLKDKWRN 47
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 79-125 3.41e-07

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 47.30  E-value: 3.41e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1983943827  79 PDLVKGPWTKEEDQKVIELVKKYGTkKWTLIAKhLKGRLGKQCRERW 125
Cdd:cd11659     1 PSIKKTEWTREEDEKLLHLAKLLPT-QWRTIAP-IVGRTAQQCLERY 45
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 32-79 2.70e-05

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 41.78  E-value: 2.70e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1983943827  32 VKWTHEEDEQLRALVRQFGQQDWKFLASHFP---NRTDQQCQYRWlRVLNP 79
Cdd:cd11660     1 RKWTDEEDEALVEGVEKYGVGNWAKILKDYFfvnNRTSVDLKDKW-RNLKK 50
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 131-170 6.02e-05

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 41.14  E-value: 6.02e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1983943827 131 PEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLpGRTDN 170
Cdd:cd11659     1 PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAPIV-GRTAQ 39
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 23-181 1.01e-04

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 45.55  E-value: 1.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827  23 LEQKDSKCKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWL-----------------RVLNPDLVKGP 85
Cdd:COG5147   214 KSEINKAFKKGETLALEQEINEYKEKKGLSRKQFCERIWSTDRDEDKFWPNIykklpyrdkksiykhlrRKYNIFEQRGK 293

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983943827  86 WTKEEDQKVIELVKKYGtKKWTLIAKhLKGRLGKQCRERWHNHLNP--EVKKSCWT-EEEDRIIC-------EAHKVLGN 155
Cdd:COG5147   294 WTKEEEQELAKLVVEHG-GSWTEIGK-LLGRMPNDCRDRWRDYVKCgdTLKRNRWSiEEEELLDKvvnemrlEAQQSSRI 371

                         170       180
                  ....*....|....*....|....*.
gi 1983943827 156 RWAEIAKMLPGRTDNAVKNHWNSTIK 181
Cdd:COG5147   372 LWLLIAQNIRNRLQHHCRDKYGVLIS 397
GT1 cd12203
GT1, myb-like, SANT family; GT-1, a myb-like protein, is one of the GT trihelix transcription ...
 86-136 7.49e-04

GT1, myb-like, SANT family; GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcription pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resembles the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 213402  Cd Length: 66  Bit Score: 38.42  E-value: 7.49e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1983943827  86 WTKEEDQKVI----ELVKKYGTKK-----WTLIAKHLK--G--RLGKQCRERWhNHLNPEVKKS 136
Cdd:cd12203     3 WPREETLSLIrlrrEMESRFQETKskkalWEEIAAKMRelGynRSAKQCKEKW-ENLNKYYKKV 65
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 31-78 8.37e-03

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 34.98  E-value: 8.37e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1983943827  31 KVKWTHEEDEQLRALVRQFGQQdWKFLAShFPNRTDQQCQYRWLRVLN 78
Cdd:cd11659     5 KTEWTREEDEKLLHLAKLLPTQ-WRTIAP-IVGRTAQQCLERYNKLLD 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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