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Conserved domains on  [gi|1981061856|ref|WP_203111943|]
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flagellar hook-associated protein FlgK [Legionella bononiensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgK super family cl32813
flagellar hook-associated protein FlgK; Provisional
 1-648 0e+00

flagellar hook-associated protein FlgK; Provisional


The actual alignment was detected with superfamily member PRK12715:

Pssm-ID: 183698 [Multi-domain]  Cd Length: 649  Bit Score: 883.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   1 MSILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQRYAGSFVGSGVFVSSIDRNVDQFINSQVRSTLSL 80
Cdd:PRK12715    1 MSILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSSIYRNVDQFANAQVRSTLSY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  81 KSQFDTFYTQAIQIDKLLSQDGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQNSTAQ 160
Cdd:PRK12715   81 RTQYDAFYNQAIQIDKLLSQDGSSISVPLQTFFDSIGQLNSTPDNIATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 161 ISGAVRQINQLTKDIAAINKQLMSTSDSPELLDRRDELLKELSQYTNLSIFDQGDGTISVGIATGDMLVSGTEQRDLVVG 240
Cdd:PRK12715  161 VTESVKIINRITKELAEVNGKLLGNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVAGTQQRDLVVG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 241 TGNSGVSGTQVYLSNG-TGQIDITSRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGMDLNNQIGKDFF 319
Cdd:PRK12715  241 TGKDSIFGTKIFLSSGgNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMAIGLAQTFNAQHKLGMDMNSQIGKDFF 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 320 TDFNSPAQQRNRVVAPSTNTGTGVLSVAISDISQTKLSDYEVVVTDALTNEVRVTRKSDGSSTILNWTNTPPTPPAGQLV 399
Cdd:PRK12715  321 TDFNSPGQMLKRSTASADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSPPAPPAGQVV 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 400 FEGMTITVDDTANLANNDRFTLIPTRGAARDLALQINDAREIALASPVSTRASLNNTGQGQIALGTVYNTTAVNKQYRID 479
Cdd:PRK12715  401 IDGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKTTASLNNTGQGQIILGPVLNTASVNKQFRID 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 480 FISDTQYNLVNVTDSTTTGPLAFVPNTNNTIQIPDALNPSYSVVISGIPKSGDQFTAEYNSGAAGDNRNGLGLSGIQQSK 559
Cdd:PRK12715  481 FISDTQYNLVNVTDSTTAGPFAFVPNTNNVIQIPDGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILGNIQQNK 560

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 560 FLSNGTENLFDRYANLLAEVGGHTKQAQLSSESADVLHKQALDFWQSKSGVNQDEEGINLLKFKQAYEAAGKLLEISNQM 639
Cdd:PRK12715  561 IFSNGSETLFDRYGSLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLMEISNQI 640


                  ....*....
gi 1981061856 640 MSLLFDMMR 648
Cdd:PRK12715  641 MNLLFDIMR 649
 
Name Accession Description Interval E-value
flgK PRK12715
flagellar hook-associated protein FlgK; Provisional
 1-648 0e+00

flagellar hook-associated protein FlgK; Provisional


Pssm-ID: 183698 [Multi-domain]  Cd Length: 649  Bit Score: 883.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   1 MSILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQRYAGSFVGSGVFVSSIDRNVDQFINSQVRSTLSL 80
Cdd:PRK12715    1 MSILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSSIYRNVDQFANAQVRSTLSY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  81 KSQFDTFYTQAIQIDKLLSQDGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQNSTAQ 160
Cdd:PRK12715   81 RTQYDAFYNQAIQIDKLLSQDGSSISVPLQTFFDSIGQLNSTPDNIATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 161 ISGAVRQINQLTKDIAAINKQLMSTSDSPELLDRRDELLKELSQYTNLSIFDQGDGTISVGIATGDMLVSGTEQRDLVVG 240
Cdd:PRK12715  161 VTESVKIINRITKELAEVNGKLLGNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVAGTQQRDLVVG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 241 TGNSGVSGTQVYLSNG-TGQIDITSRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGMDLNNQIGKDFF 319
Cdd:PRK12715  241 TGKDSIFGTKIFLSSGgNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMAIGLAQTFNAQHKLGMDMNSQIGKDFF 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 320 TDFNSPAQQRNRVVAPSTNTGTGVLSVAISDISQTKLSDYEVVVTDALTNEVRVTRKSDGSSTILNWTNTPPTPPAGQLV 399
Cdd:PRK12715  321 TDFNSPGQMLKRSTASADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSPPAPPAGQVV 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 400 FEGMTITVDDTANLANNDRFTLIPTRGAARDLALQINDAREIALASPVSTRASLNNTGQGQIALGTVYNTTAVNKQYRID 479
Cdd:PRK12715  401 IDGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKTTASLNNTGQGQIILGPVLNTASVNKQFRID 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 480 FISDTQYNLVNVTDSTTTGPLAFVPNTNNTIQIPDALNPSYSVVISGIPKSGDQFTAEYNSGAAGDNRNGLGLSGIQQSK 559
Cdd:PRK12715  481 FISDTQYNLVNVTDSTTAGPFAFVPNTNNVIQIPDGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILGNIQQNK 560

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 560 FLSNGTENLFDRYANLLAEVGGHTKQAQLSSESADVLHKQALDFWQSKSGVNQDEEGINLLKFKQAYEAAGKLLEISNQM 639
Cdd:PRK12715  561 IFSNGSETLFDRYGSLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLMEISNQI 640


                  ....*....
gi 1981061856 640 MSLLFDMMR 648
Cdd:PRK12715  641 MNLLFDIMR 649
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
1-648 1.23e-93

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 297.17  E-value: 1.23e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   1 MSILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQRYAGSFVGSGVFVSSIDRNVDQFINSQVRSTLSL 80
Cdd:COG1256     3 FSALNIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLSAAGPTATGAGQVGTGVRVTGIRRIRDEFLDAQLRSANSD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  81 KSQFDTFYTQAIQIDKLLSQ-DGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQNSTA 159
Cdd:COG1256    83 LGYAEARADALSQLEALLGEpSDTGLSTALDDFFNALQELASNPESSAARQAVLEAAQALADRFNSLSSQLQDLRADADS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 160 QISGAVRQINQLTKDIAAINKQLMST----SDSPELLDRRDELLKELSQYTNLSIFDQGDGTISVGIATGDMLVSGTEQR 235
Cdd:COG1256   163 QIASTVDEINSLLSQIADLNKQIVKAeaggQDANDLLDQRDQLLDELSELVGVTVVEQDDGTVNVSTGNGQTLVDGDTAS 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 236 DL-VVGTGNSGVSGTQVYLSNGTGQIDITSRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGMDLNNQI 314
Cdd:COG1256   243 ELsFTPSAGDPGGLSTVTLDDSGVPSDATSSITGGSLGGLLELRDETLPEYQAQLDELARGLADAFNAVHAQGYDLNGNP 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 315 GKDFFTdfnspaqqrnrvvAPSTNTGTGVLSVAISDISqtklsdyevvvtdaltnevrvtrksdgsstilnwtntpptpp 394
Cdd:COG1256   323 GGDLFD-------------IDPSITGGTLTPFDTVGAG------------------------------------------ 347

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 395 agqlvfegmTITVDDTAnlanndrftliptrgaardlalqINDAREIALASPvstraslnntgqgqialgtvynttavnk 474
Cdd:COG1256   348 ---------NISVNPAV-----------------------IGDPSLLAAANS---------------------------- 367

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 475 qyridfisdtqynlvnvtdstttgplafvpntnntiqipdalnpsysvvisgipksgdqftaeyNSGAAGDNRNGLGLSG 554
Cdd:COG1256   368 ----------------------------------------------------------------DGGGAGDNTNALALAA 383

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 555 IQQSK--FLSNGTENLFDRYANLLAEVGGHTKQAQLSSESADVLHKQALDFWQSKSGVNQDEEGINLLKFKQAYEAAGKL 632
Cdd:COG1256   384 LQDAKlvFDSGGSGTLSDYYASLVSDLGVDAQQAKTEAEAQEALLDQLENQRQSVSGVNLDEEMANLIKFQQAYQANARV 463

                         650
                  ....*....|....*.
gi 1981061856 633 LEISNQMMSLLFDMMR 648
Cdd:COG1256   464 ITTADEMLDTLLNIVG 479
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 2-311 3.58e-59

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 201.42  E-value: 3.58e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   2 SILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQRYAGSFVGSGVFVSSIDRNVDQFINSQVRSTLSLK 81
Cdd:TIGR02492   1 SLLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRAVLTAVPAGGQGGKQIGTGVKVTSIRRIQDQFLDNQYRRANSSA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  82 SQFDTFYTQAIQIDKLLS-QDGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQNSTAQ 160
Cdd:TIGR02492  81 GYADSRASGLSKIEQIFNdLDGSGLGTYLNNFFNALQELAKNPDSEALRQAVLESAQALANSFNQTSNELQDLRKGINAE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 161 ISGAVRQINQLTKDIAAINKQL----MSTSDSPELLDRRDELLKELSQYTNLSIFDQGDGTISVGIATGDMLVSGTE--- 233
Cdd:TIGR02492 161 IKSAVTEINSLLKQIASLNKEIkqveASGQDANDLLDQRDLLLKELSQLIGISVSENENGTVNVYTGSGQVLVDGATvtg 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 234 --QRDLVVGTGNSGVSGTQVYLSNGTGQIDITSRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGMDLN 311
Cdd:TIGR02492 241 ssTSPLTADTTGGKVGGDGVYLPSGSSKVTISSDLQGGKLGGLLDLRDGVLPDLQSQLDQLAKTLADEFNEVHQSGADLT 320
Flg_bb_rod pfam00460
Flagella basal body rod protein;
4-33 1.09e-03

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 36.78  E-value: 1.09e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1981061856   4 LSIAYSGLSAFQRAFEVAGNNIANATTKGY 33
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
 
Name Accession Description Interval E-value
flgK PRK12715
flagellar hook-associated protein FlgK; Provisional
 1-648 0e+00

flagellar hook-associated protein FlgK; Provisional


Pssm-ID: 183698 [Multi-domain]  Cd Length: 649  Bit Score: 883.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   1 MSILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQRYAGSFVGSGVFVSSIDRNVDQFINSQVRSTLSL 80
Cdd:PRK12715    1 MSILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSSIYRNVDQFANAQVRSTLSY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  81 KSQFDTFYTQAIQIDKLLSQDGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQNSTAQ 160
Cdd:PRK12715   81 RTQYDAFYNQAIQIDKLLSQDGSSISVPLQTFFDSIGQLNSTPDNIATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 161 ISGAVRQINQLTKDIAAINKQLMSTSDSPELLDRRDELLKELSQYTNLSIFDQGDGTISVGIATGDMLVSGTEQRDLVVG 240
Cdd:PRK12715  161 VTESVKIINRITKELAEVNGKLLGNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTISVGIASGDMLVAGTQQRDLVVG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 241 TGNSGVSGTQVYLSNG-TGQIDITSRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGMDLNNQIGKDFF 319
Cdd:PRK12715  241 TGKDSIFGTKIFLSSGgNNQVDITDRLTTGMLGGLIDYEKNVLGQASQLIGQMAIGLAQTFNAQHKLGMDMNSQIGKDFF 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 320 TDFNSPAQQRNRVVAPSTNTGTGVLSVAISDISQTKLSDYEVVVTDALTNEVRVTRKSDGSSTILNWTNTPPTPPAGQLV 399
Cdd:PRK12715  321 TDFNSPGQMLKRSTASADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSPPAPPAGQVV 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 400 FEGMTITVDDTANLANNDRFTLIPTRGAARDLALQINDAREIALASPVSTRASLNNTGQGQIALGTVYNTTAVNKQYRID 479
Cdd:PRK12715  401 IDGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKTTASLNNTGQGQIILGPVLNTASVNKQFRID 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 480 FISDTQYNLVNVTDSTTTGPLAFVPNTNNTIQIPDALNPSYSVVISGIPKSGDQFTAEYNSGAAGDNRNGLGLSGIQQSK 559
Cdd:PRK12715  481 FISDTQYNLVNVTDSTTAGPFAFVPNTNNVIQIPDGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILGNIQQNK 560

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 560 FLSNGTENLFDRYANLLAEVGGHTKQAQLSSESADVLHKQALDFWQSKSGVNQDEEGINLLKFKQAYEAAGKLLEISNQM 639
Cdd:PRK12715  561 IFSNGSETLFDRYGSLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLMEISNQI 640


                  ....*....
gi 1981061856 640 MSLLFDMMR 648
Cdd:PRK12715  641 MNLLFDIMR 649
flgK PRK06945
flagellar hook-associated protein FlgK; Validated
 1-639 1.04e-133

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235895 [Multi-domain]  Cd Length: 651  Bit Score: 406.71  E-value: 1.04e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   1 MSILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQRYAGSFVGSGVFVSSIDRNVDQFINSQVRSTLSL 80
Cdd:PRK06945    2 SSLLNIGLSGLNAAQWGLTTTGHNISNAATPGYSRQRVVQAEAGGQYTGSGYLGQGVNVVTVKRQYSQYLSAQLNNAQAA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  81 KSQFDTFYTQAIQIDKLLSQDGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQNSTAQ 160
Cdd:PRK06945   82 SSSLSTYYSQISQLNNYLADPTAGLSPAITSFFTGLQNVANNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 161 ISGAVRQINQLTKDIAAINKQ---LMSTSDSP--ELLDRRDELLKELSQYTNLSIFDQGDGTISVGIATGDMLVSGTEQR 235
Cdd:PRK06945  162 LTSSVTQINSYTKQIAQLNDQiakAESSQGQPpnDLLDQRDQLVSELSKLVGVTVVQQDDGGYNVFVGNGQPLVVGNQSY 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 236 DLVVGTGNSGVSGTQV--YLSNGTGQIDITSRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGMDLNNQ 313
Cdd:PRK06945  242 QLTTVPSPSDPSRLTVagYKPPGTTQELPDSSLTGGTLGGLLAFRSQTLDPAQNQLGRLAASLAAQFNAQNALGIDLNGN 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 314 IGKDFFTdFNSPAqqrnrVVAPSTNTGTGVLSVAISDISQTKLSDYEVVVTDAltnEVRVTRKSDGSStilnWTNTPPTP 393
Cdd:PRK06945  322 LGGDLFS-VAGPT-----VYANANNTGSATLTASITNASALTTSDYTLSYDGT---NYTLTRLSDGSV----VGTATSLP 388

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 394 PAGQLVFEGMTITVddTANLANNDRFTLIPTRGAARDLALQINDAREIALASPVSTRASLNNTGQGQIALGTV-----YN 468
Cdd:PRK06945  389 TPPPTTIDGLSLSL--SGTMNAGDSFLVQPTRNAANGFSVATTDGSAIAAASPVRASAGSTNTGTGAISQGSVssgypLP 466

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 469 TTAVNKQYridfiSDTQYNL----VNVTDSTTTGPLAFVPNTNNTIQIPDALNPSY-------SVVISGIPKSGDQFTAE 537
Cdd:PRK06945  467 SGTTTLTY-----DAATGTLsgfpAGTTVTVAGTPPTSVTITPATTPVPYTSGAGIslvfngvSVTLSGTPADGDTFTIG 541

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 538 YNSGAAGDNRNGLGLSGIQQSKFLSNGTENLFDRYANLLAEVGGHTKQAQLSSESADVLHKQALDFWQSKSGVNQDEEGI 617
Cdd:PRK06945  542 PNTGGTNDGRNALALAKLQNAKTLDGGTATYTGAYAQLVNQVGNKASQLKVSSAAQTALLGQITAAQQSVSGVNLDEEAA 621

                         650       660
                  ....*....|....*....|..
gi 1981061856 618 NLLKFKQAYEAAGKLLEISNQM 639
Cdd:PRK06945  622 NLLRYQQAYQANAKVIQTASTL 643
flgK PRK05683
flagellar hook-associated protein FlgK; Validated
 1-643 2.78e-114

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235558 [Multi-domain]  Cd Length: 676  Bit Score: 357.12  E-value: 2.78e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   1 MSILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQ-TIQFSPGPSQrYAGSFVGSGVFVSSIDRNVDQFINSQVRSTLS 79
Cdd:PRK05683    1 MSLISIGLSGLGASQTALAVTGNNIANVDTAGYSRQqTVQTTKASQQ-SGAGYIGTGTTLADVRRIYNSFLDTQLRTATS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  80 LKSQFDTFYTQAIQIDKLLSQDGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQNSTA 159
Cdd:PRK05683   80 LNSDASAYLGQISQLDKLLSDSTTGISPALQRFFTALQTAAANPTDTAARQLLLTQAQGLSKRFNSLSSQLNQQNSNINS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 160 QISGAVRQINQLTKDIAAINKQLM---STSDSP-ELLDRRDELLKELSQYTNLSIFDQgDGTISVGIATGDMLVSGTEQR 235
Cdd:PRK05683  160 QLSAMTDQVNNLTTSIASYNKQIAqasASGATPnDLLDARDEAVRQLNELVGVTVVER-DGNYDVYIGSGQPLVVGNTAN 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 236 DLVVGTGNSGVSGTQVYLSNGTGQIDITSRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGMDLNNQIG 315
Cdd:PRK05683  239 TLSVVPGPSDPSRYNVQLNRGSSTQDVTSVVSGGEIGGLLRYRSDVLDPAMNELGRLALVVADQINSQLGQGIDLNGNFG 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 316 KDFFTDFNSPAQQRNRVVAPSTNT-GTGVLSVAISDISQTKLSDYEVVVTDAltNEVRVTRKSDGSSTILNWTNTPPTPp 394
Cdd:PRK05683  319 SSLFGDINSADAISQRSLAKNGNSaGSGNLNVTIKDTSKLTTSDYEVTFTSA--TNYTVRRLSDGTDMGSFDLSDNPAP- 395

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 395 agqlVFEGMTITVDDTAnLANNDRFTLIPTRGAARDLALQINDAREIALASPVSTRASLNNTGQGQIALGTVynTTAVNK 474
Cdd:PRK05683  396 ----VIDGFSLSLNGGT-LAAGDSFKVTPTRNAASDIETVLTDPKKLAFAAPLTAEAGSGNSGTGSITQPTL--TSKLDI 468

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 475 QYRIDfISDTQYNLVN------VTDSTTTGPLAF---------------VPNTNNTIQIPDALNP-----------SYSV 522
Cdd:PRK05683  469 YDPAQ-TADLQNAIKNstpvklVFGADSSGPQSYtlvdakgnaigsgtiVPGQSNTLTLAVPMPDasgnpindatfTFEM 547

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 523 VISGIPKSGDQFTAEYNSGAAGDNRNGLGLSGIQQSKFLSNGTE----NLFDRYANLLAEVGGHTKQAQLSSESADVLHK 598
Cdd:PRK05683  548 TISGSPQAGDSFTVSFNGAGSSDNRNALALLGLQTKSTVGVGSGgkgtSLTDAYGKLVERVGTLASQARADATATAAVLK 627

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*
gi 1981061856 599 QALDFWQSKSGVNQDEEGINLLKFKQAYEAAGKLLEISNQMMSLL 643
Cdd:PRK05683  628 QAKDSRDSLSGVSLDEEAANLIKFQQYYTASSQIIKAAQETFSTL 672
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
1-648 1.23e-93

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 297.17  E-value: 1.23e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   1 MSILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQRYAGSFVGSGVFVSSIDRNVDQFINSQVRSTLSL 80
Cdd:COG1256     3 FSALNIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLSAAGPTATGAGQVGTGVRVTGIRRIRDEFLDAQLRSANSD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  81 KSQFDTFYTQAIQIDKLLSQ-DGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQNSTA 159
Cdd:COG1256    83 LGYAEARADALSQLEALLGEpSDTGLSTALDDFFNALQELASNPESSAARQAVLEAAQALADRFNSLSSQLQDLRADADS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 160 QISGAVRQINQLTKDIAAINKQLMST----SDSPELLDRRDELLKELSQYTNLSIFDQGDGTISVGIATGDMLVSGTEQR 235
Cdd:COG1256   163 QIASTVDEINSLLSQIADLNKQIVKAeaggQDANDLLDQRDQLLDELSELVGVTVVEQDDGTVNVSTGNGQTLVDGDTAS 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 236 DL-VVGTGNSGVSGTQVYLSNGTGQIDITSRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGMDLNNQI 314
Cdd:COG1256   243 ELsFTPSAGDPGGLSTVTLDDSGVPSDATSSITGGSLGGLLELRDETLPEYQAQLDELARGLADAFNAVHAQGYDLNGNP 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 315 GKDFFTdfnspaqqrnrvvAPSTNTGTGVLSVAISDISqtklsdyevvvtdaltnevrvtrksdgsstilnwtntpptpp 394
Cdd:COG1256   323 GGDLFD-------------IDPSITGGTLTPFDTVGAG------------------------------------------ 347

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 395 agqlvfegmTITVDDTAnlanndrftliptrgaardlalqINDAREIALASPvstraslnntgqgqialgtvynttavnk 474
Cdd:COG1256   348 ---------NISVNPAV-----------------------IGDPSLLAAANS---------------------------- 367

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 475 qyridfisdtqynlvnvtdstttgplafvpntnntiqipdalnpsysvvisgipksgdqftaeyNSGAAGDNRNGLGLSG 554
Cdd:COG1256   368 ----------------------------------------------------------------DGGGAGDNTNALALAA 383

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 555 IQQSK--FLSNGTENLFDRYANLLAEVGGHTKQAQLSSESADVLHKQALDFWQSKSGVNQDEEGINLLKFKQAYEAAGKL 632
Cdd:COG1256   384 LQDAKlvFDSGGSGTLSDYYASLVSDLGVDAQQAKTEAEAQEALLDQLENQRQSVSGVNLDEEMANLIKFQQAYQANARV 463

                         650
                  ....*....|....*.
gi 1981061856 633 LEISNQMMSLLFDMMR 648
Cdd:COG1256   464 ITTADEMLDTLLNIVG 479
flgK PRK08147
flagellar hook-associated protein FlgK; Validated
 1-645 7.00e-93

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236165 [Multi-domain]  Cd Length: 547  Bit Score: 297.36  E-value: 7.00e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   1 MSILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQRYAGSFVGSGVFVSSIDRNVDQFINSQVRSTLSL 80
Cdd:PRK08147    2 SSLINTAMSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAQAGSTLTAGGWIGNGVYVSGVQREYDAFITNQLRAAQTQ 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  81 KSQFDTFYTQAIQIDKLLSQDGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQNSTAQ 160
Cdd:PRK08147   82 SSGLTTRYEQMSKIDNLLSDSTNSLSTTMQDFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTA 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 161 ISGAVRQINQLTKDIAAINKQLM------STSDSPELLDRRDELLKELSQYTNLSIFDQGDGTISVGIATGDMLVSGTEQ 234
Cdd:PRK08147  162 IGSSVDQINNYAKQIASLNDQITrltgvgAGASPNDLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 235 RDLVVGTGNSGVSGTQV-YLSNGTGQIDIT-SRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGMDLNN 312
Cdd:PRK08147  242 YQLAAVPSSADPTRTTVaYVDGTAGNIEIPeKLLTTGSLGGLLTFRSQDLDQTRNQLGQLALAFADAFNTQHKAGFDANG 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 313 QIGKDFFTdFNSPAqqrnrVVAPSTNTGTGVLSVAISDISQTKLSDYEVVVTDAltnEVRVTRKSDGSStilnwTNTPPT 392
Cdd:PRK08147  322 DAGEDFFS-IGKPA-----VLSNSKNTGTASLTAEYTDASAVKATDYKISFDGT---NWQVTRLSDNTT-----FTVTPD 387

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 393 PPAGQLVFEGMTITVDDTAnlANNDRFTLIPTRGAARDLALQINDAREIALASPvstraslnntgqgqialgtvynttav 472
Cdd:PRK08147  388 ANGKTLEFDGLKVTVTGTP--AANDSFTLKPVSDAIVNMDVLITDESKIAMASE-------------------------- 439

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 473 nkqyridfisdtqynlvnvtdstttgplafvpntnntiqipdalnpsysvvisgipksgdqftaeyNSGAAGDNRNGLGL 552
Cdd:PRK08147  440 ------------------------------------------------------------------ADGGDSDNRNGQAL 453

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 553 SGIQQSKfLSNGTENLFDRYANLLAEVGGHTKQAQLSSESADVLHKQALDFWQSKSGVNQDEEGINLLKFKQAYEAAGKL 632
Cdd:PRK08147  454 LDLQNKK-LVGGKKSFNDAYASLVSDVGNQTATLKTSSTTQANVVTQLTNQQQSVSGVNLDEEYGNLQRFQQYYLANAQV 532

                         650
                  ....*....|...
gi 1981061856 633 LeisnQMMSLLFD 645
Cdd:PRK08147  533 L----QTASTLFD 541
flgK PRK12714
flagellar hook-associated protein FlgK; Provisional
 1-648 7.45e-92

flagellar hook-associated protein FlgK; Provisional


Pssm-ID: 183697 [Multi-domain]  Cd Length: 624  Bit Score: 297.25  E-value: 7.45e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   1 MSILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQRYAGSFVGSGVFVSSIDRNVDQFINSQVRSTLSL 80
Cdd:PRK12714    1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITDVGRVADQLAISRLLDSGGE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  81 KSQFDTFYTQAIQIDKLLSQDGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQNSTAQ 160
Cdd:PRK12714   81 LSRLQQLSSLSNRVDALYSNTATNVAGLWSNFFDSTSALSSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 161 ISGAVRQINQLTKDIAAINKQLMSTSD--SPELLDRRDELLKELSQYTNLSIFDQGDGTISVGIATGDMLVSGTEQRDLV 238
Cdd:PRK12714  161 LTSSVDEVNRLTQQIAKINGTIGSSAQnaAPDLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTASKLT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 239 VGTGNSGVSGTQVYLSNGTGQIDITSRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGMDLNNQIGKDF 318
Cdd:PRK12714  241 TVADPYQPTKLQVAMQTQGQNVSLSPSSLGGQIGGLLEFRSSVLEPTQAELGRLAVGMASSFNAGHSQGMDLYGAMGGNF 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 319 FtDFNSPaqqrnRVVAPSTNTGTGVLSVAISDISqtKLSDYEVVVTDALTNeVRVTRKSDGSSTILNWTNTPPTPpagqL 398
Cdd:PRK12714  321 F-NIGSP-----TVAANPSNTGTASLSASFSNLS--AVDGQNVTLSFDGTN-WKATRADTGSAVPMTGTGTAADP----L 387

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 399 VFEGMTITVDDTAnlANNDRFTLIPTRGAARDLALQINDAREIALASPVSTRASLNNTGQGQIALGTVYNTTAVN--KQY 476
Cdd:PRK12714  388 VLNGVSMVVGGTP--ASGDKFLLQPTAGLAGSLSVAITDPSRIAAATPVKATATLANQGTGKISDVKVTNAQNPAllTPS 465

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 477 RIDFISDTQYNLvnvtdsTTTGPLAFVPntNNTIQIpdalnPSYSVVISGIPKSGDQFTAEYNSGAAGDNRNGLGLSGIQ 556
Cdd:PRK12714  466 SIEFIDANQYTI------DGAGPFAYTA--GQTISA-----NGWSFALDGAPKAGDTFGVGPTGAGSSDNGNAKLLAKVD 532

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 557 QSKFLSNGTENLFDRYANLLAEVGGHTKQAQLSSESADVLHKQALDFWQSKSGVNQDEEGINLLKFKQAYEAAGKLLEIS 636
Cdd:PRK12714  533 DAKALNGGTVTLNGALSGLTTSVGSAARAANYSADAQKVINDQAQASRDSISGVNLDEEAANMLKLQQAYQAAAQMISTA 612

                         650
                  ....*....|..
gi 1981061856 637 NQMMSLLFDMMR 648
Cdd:PRK12714  613 DTMFQAILGAVR 624
flgK PRK08871
flagellar hook-associated protein FlgK; Validated
 3-637 4.05e-73

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 181572 [Multi-domain]  Cd Length: 626  Bit Score: 247.45  E-value: 4.05e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   3 ILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQT-IQFSPGPSQrYAGSFVGSGVFVSSIDRNVDQF-INSQVRSTLSL 80
Cdd:PRK08871    5 LLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSvIQGTNDPRQ-FGGSTYGMGVHVENVRRSWDQFaVNELNLSTTNL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  81 KSQFDTfYTQAIQIDKLLSQDGTS-ISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQNSTA 159
Cdd:PRK08871   84 ANKTDT-EANLDMLSSMLSSVASKkIPENLNEWFDAVKTLADSPNDLGARKVVLEKAKLISQTLNDFHETVRQQKDVTNK 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 160 QISGAVRQINQLTKDIAAINKQLMSTSDSP-ELLDRRDELLKELSQYTNLSIFDQGDG-TISVGIATGDMLVSGTEQRDL 237
Cdd:PRK08871  163 KLDLGVERINQIALEIRDIHRLMMRTPGPHnDLMDQHEKLVKELSQYTKVTVTPRKNAeGFNVHIGNGHTLVSGTEASQL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 238 VVGTGNSGVSGTQVYLSNGTGQIDITSRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGMDLNNQIGKD 317
Cdd:PRK08871  243 KMIDGYPDPHQRRLAMVEGKGLKAIKADDIGGKLGALLDMRDEHIPYLMDELGRLATGFSSEVNTLQSQGLDLRGNVGGN 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 318 FFTDFNSPAQQRNRVVAPSTNTGTgvLSVAISDISQTKLSDYevvvtdALT---NEVRVTrKSDGSSTILNWTNTPPTpp 394
Cdd:PRK08871  323 LFTDVNSEVIARSRVVTAPNSKAD--VAVFIDDISQLKGGEY------ALRydgSQYTVT-KPSGEQQSLDPDGNPSA-- 391

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 395 agqLVFEGMTITVDDTanLANNDRFTLIPTRGAARDLALQINDAREIALASPVSTraslnntgqgqialgtvynTTAVNK 474
Cdd:PRK08871  392 ---FYLDGMRVEVRNP--PQAGERILLRPTRNGAAQIKLETNDAKKIAAQSYEAS-------------------TTFAQG 447

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 475 QYRIDFISDTQYNLVNVTDSTTTGPLAFVPNTNNTIQIPDALNPSYSVVISGI-------PKSGDQFTAEYNSgAAGDNR 547
Cdd:PRK08871  448 KAKFKILQAGDLREFEVIVSPTGDQFAVTDTKGNILLQPQPYPPKGPVTVGGTtfeltegALANDKFTANLVP-SEGDNG 526

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 548 NGLGLSGIQQSKFLSNGTENLFDRYANLLAEVGGHTKQAQLSSESADVLHKQALDFWQSKSGVNQDEEGINLLKFKQAYE 627
Cdd:PRK08871  527 NLRKMQNLQTDKVMDDGESTIIDLYHNLNTEVGLKKATATRLADVARLEKEAAQSRVASISGVNLDEEAANMMKFQQAYM 606

                         650
                  ....*....|
gi 1981061856 628 AAGKLLEISN 637
Cdd:PRK08871  607 ASSRIMQAAN 616
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 2-311 3.58e-59

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 201.42  E-value: 3.58e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   2 SILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQRYAGSFVGSGVFVSSIDRNVDQFINSQVRSTLSLK 81
Cdd:TIGR02492   1 SLLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRAVLTAVPAGGQGGKQIGTGVKVTSIRRIQDQFLDNQYRRANSSA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  82 SQFDTFYTQAIQIDKLLS-QDGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQNSTAQ 160
Cdd:TIGR02492  81 GYADSRASGLSKIEQIFNdLDGSGLGTYLNNFFNALQELAKNPDSEALRQAVLESAQALANSFNQTSNELQDLRKGINAE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 161 ISGAVRQINQLTKDIAAINKQL----MSTSDSPELLDRRDELLKELSQYTNLSIFDQGDGTISVGIATGDMLVSGTE--- 233
Cdd:TIGR02492 161 IKSAVTEINSLLKQIASLNKEIkqveASGQDANDLLDQRDLLLKELSQLIGISVSENENGTVNVYTGSGQVLVDGATvtg 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 234 --QRDLVVGTGNSGVSGTQVYLSNGTGQIDITSRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGMDLN 311
Cdd:TIGR02492 241 ssTSPLTADTTGGKVGGDGVYLPSGSSKVTISSDLQGGKLGGLLDLRDGVLPDLQSQLDQLAKTLADEFNEVHQSGADLT 320
flgK PRK06665
flagellar hook-associated protein FlgK; Validated
 10-647 1.08e-47

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180650 [Multi-domain]  Cd Length: 627  Bit Score: 177.55  E-value: 1.08e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  10 GLSAFQRAFEVAGNNIANATTKGYSRQTIQ-------FSPGPSQRYAGSFVGSGVFVSSIDRNVDQFINSQVRSTLSLKS 82
Cdd:PRK06665   14 SLFAHKQALQTTGHNISNASTKGYSRQRVTmktfdplYAPSLNRAEKPGQIGQGVEIQSIERIRDELLDSRIIEESGRLG 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  83 QFDTfytqaiqIDKLLSQ--------DGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQ 154
Cdd:PRK06665   94 YWKT-------KDKYLSQleqvynepEDQSLRTRLDDFWDSWQDLSNYPEGLAERQVVLERAQSLGERIHDRYRSLERIR 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 155 QNSTAQISGAVRQINQLTKDIAAINKQLMST---SDSP-ELLDRRDELLKELSQYTNLSIFDQGDGTISVGIAtGDMLVS 230
Cdd:PRK06665  167 DMANDEIEITVEEINNILRNIADLNEQIVKSqamGDNPnDLLDRRDLLVDKLSSLIDVSIERSDPDEFMIHIG-GRHLVQ 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 231 GTEQR--DLVVGTGNSGVSgtQVYLSNgTGQidiTSRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGM 308
Cdd:PRK06665  246 GNIANelDLEANPPNEGYW--DILWSA-NGD---PALLRTGKLGALIELRDTDIRDEINELDTLAINIVDLVNEIHRSGF 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 309 DLNNQIGKDFFTdfnspaqqrnrvvapstntgtgvlsvaisdisQTKLsdyevvvtdaLTNEV-RVTRKSDG---SSTIL 384
Cdd:PRK06665  320 GLNGKTGRDFFT--------------------------------QEYK----------LTNTRgNYDSNGDGqfdSTHIF 357

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 385 NWTNTPPTPPAGQLVFEGmTITVDDTanlaNNDRFTLIP--TRGAARDLALQINDAReialaSPVSTRASLNNtgqgQIA 462
Cdd:PRK06665  358 RVNGTNSIDPDEKIGISG-TLRFQAS----NKNGTVEIPynATDTVNDVIKRINNSN-----AQVTAYLNHNN----KLV 423

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 463 LGTVYNTTAVNKQYRIDFISDTQYNLVNVTD-------------STTTGPLAFVPNTNNTIQIPDAlNPSYSVVISGIPK 529
Cdd:PRK06665  424 LKATKADDDENPDFVIRHIEDSGDFLVGYTGilnasgpegaydyQRIDTINKLQGNGADYTVSPLK-HPASWIKVNDIIR 502

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 530 SGDQFTA----EYNS-GAAGDNRNGLGLSGIQQSKFLSNGTENLFDRYANLLAEVGGHTKQAQLSSESADVLHKQALDFW 604
Cdd:PRK06665  503 NDPSNIAagigDPTNpNGIGDGRAALAIASLRNSPVMVGKSKTFDDFFANTISNIGIKGETAEIEKESQNQIMKELEDLR 582

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|...
gi 1981061856 605 QSKSGVNQDEEGINLLKFKQAYEAAGKLLEISNQMMSLLFDMM 647
Cdd:PRK06665  583 QSVSGVNLDEELANMIEFQHGYNASARFISVSNELLDTIINRM 625
flgK PRK07191
flagellar hook-associated protein FlgK; Validated
 1-320 4.01e-45

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180871 [Multi-domain]  Cd Length: 456  Bit Score: 166.92  E-value: 4.01e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   1 MSILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQRYAGSFVGSGVFVSSIDRNVDQFINSQVRSTLSL 80
Cdd:PRK07191    1 MNFIRTAFSGMQAAQAHLNATSMNIANMHTPGYSRQGVEQSAIGADGQGGVNAGNGVNVDGIRRLSQQYVVMQEWQANSQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  81 KSQFDTFYTQAIQIDKLLSQDGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEyQQNSTAQ 160
Cdd:PRK07191   81 QGYYDAGEQYFNALELVVGNKSTSLATGLNNFFSALSAATQLPDSPPMRQQVIESANAMALRFNNVNNFIVQ-QKKSIGQ 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 161 ISGA-VRQINQLTKDIAAINKQLMST----SDSPELLDRRDELLKELSQYTNLSIFDQGDGTISVGIATGDMLVSGTEQR 235
Cdd:PRK07191  160 QRDAtVKQINSLTRSIADYNQKILKNrsdgNNISDLLDQRDLQIKKLSGLIEVRVVQQEDGTYRVSVKNGQPLVNGAVAA 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 236 DLVVGTGNSGVSGTQVYLSNGTGQIDITsrlTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTFNAQHKLGMDLNNQIG 315
Cdd:PRK07191  240 ELAVDTSSVGTQKLTLHFSGATQGMNMS---CGGQLGGLNDYELTTLKPLQDSTQEMAKTVADKFNDQLTKGFDMNGAPG 316


                  ....*
gi 1981061856 316 KDFFT 320
Cdd:PRK07191  317 KPLFT 321
flgK PRK07739
flagellar hook-associated protein FlgK; Validated
 4-326 1.22e-39

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236084 [Multi-domain]  Cd Length: 507  Bit Score: 152.48  E-value: 1.22e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   4 LSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQRYAGSF-------VGSGVFVSSIDRNVDQFINSQVRS 76
Cdd:PRK07739    8 LETARRGLFAQQAALYVTGHNIANANTPGYTRQRVNLAATPPYPTPGMNrpkipgqMGTGVEAGSVERIRDQFLDIQYRR 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  77 TLSLKSQFDTFYTQAIQIDKLLSQ-DGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQ 155
Cdd:PRK07739   88 ENNKLGYWETKADALSQMEDIMNEpSDTGLNKVLDQFWNSLQELSKNPENLGARSVVRQRAQALAETFNYLSQSLTDIQN 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 156 NSTAQISGAVRQINQLTKDIAAINKQLMS---TSDSP-ELLDRRDELLKELSQYTNLSI---------FDQGDGTISVGI 222
Cdd:PRK07739  168 DLKSEIDVTVKEINSLASQISDLNKQIAKvepNGYLPnDLYDQRDLLLDELSKIVNITVeynksggnaLEDAEGTFRIDI 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 223 ATGDM---LVSGTEQRDLVVGTGNSGVSGTQVYLSNGTGQIDIT-----SRLTSGMLGGLMDyEHDVIAQAGQMIG---- 290
Cdd:PRK07739  248 LGGNGkgtLVDGKDSTVNELSVNKDDVTGLVTDLSLGGTTVSWDdtgqpVNPSSGKLKGLLE-MYGYMSGNGEEKGlype 326

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1981061856 291 ------QMAIGLAQTFNAQHKLGMDLNNQIGKDFFTDFNSPA 326
Cdd:PRK07739  327 mlndldKLAYTFATAFNEVHKQGYGLNGSTGIDFFDGTGDST 368
flgK PRK08471
flagellar hook-associated protein FlgK; Validated
 1-643 7.22e-31

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236270 [Multi-domain]  Cd Length: 613  Bit Score: 127.86  E-value: 7.22e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   1 MSI---LSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQRYAGSFVGSGVFVSSIDRNVDQFINSQVRST 77
Cdd:PRK08471    2 MGIfssLNTGYTGLQAAQVMVDTTGNNISNASSEFYTRQRVVQSAQAALNTGGGNVGTGTDIETIVRIHDEFVYSRYKKA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  78 LSLKSQFDTFYtqaiQIDKLLSQ-----DGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDE 152
Cdd:PRK08471   82 STELEYTDYEF----STLQEASQyfpdlDDTGILKDLQDYFNAWNDFASNPKDSAQKQALAQKTETLTNNIKDTRERLDT 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 153 YQQNSTAQISGAVRQINQLTKDIAAINKQLMSTSDSP------ELLDRRDELLKELSQYTNLSIFDQG---DGTISVGIA 223
Cdd:PRK08471  158 LQKKVNEELKVTVDEINSLGKQIAEINKQIKEVEAGKtlkhanELRDKRDELELTLSKLVGANVFKSSiksDSRLDTTSA 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 224 ----------TGDMLVSGTEQRDLVVGTGNSGVSGTQVYLSNGTGQ-IDITSRLTSGMLGGLMDYEHDVIAQAGQMIgqm 292
Cdd:PRK08471  238 dfgesynlniGGFNIVDGSNFHPLVLDEDENKGGFNQIYYESDDFKrIDITDKISGGKVGALLDLRGRNYDGGSGGT--- 314

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 293 AIGLAQTFnaqhklgMDLNNQIGKDFFTdfnspaqQRNRVVAPSTNtgTGVLSVAISDISQTKLSDY---------EVVV 363
Cdd:PRK08471  315 LDGKIQDY-------IDNLDTFAKTLIE-------STNNIYAQSAT--ESIESDPLSLKSDEALVDTnyniqngsfDLVV 378

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 364 TDALTNEV-RVTRKSDGSST---ILNWTNTPptppagqlvfegmtiTVDDTANLANNDrftliptrgaardlalqINDar 439
Cdd:PRK08471  379 YDTDGKEVaRKTINIDVITTmndIVQQINAN---------------TDDNNDNNANND-----------------VDD-- 424

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 440 eialaspvSTRASLNNTGQGQIALGTVYNTTAVNKQYridfisdtqynlVNVTDSTTTGPLAFvpNTNNTIQIPDALNPS 519
Cdd:PRK08471  425 --------YFTASFNNDTKTGDGLFQIQPKNASQGYT------------VSIEDKGTNFPGAL--GLNRFFDGDDASNIS 482

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 520 ysvVISGIPKSGDQFTAeYNSGAAGDNRNGLGLSGIQQSK--FLSNGT----ENLFDRYANLLAEVGGHTKQAQLSSESA 593
Cdd:PRK08471  483 ---LNSSYKKDPTTIRA-WLAPVDGNNDVANKMQQLQYDKvnFYNNKGtiknMTIEEYYRFLTTKIASDTEKNNRINDTN 558

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|
gi 1981061856 594 DVLHKQALDFWQSKSGVNQDEEGINLLKFKQAYEAAGKLLEISNQMMSLL 643
Cdd:PRK08471  559 KALLNSVKKEYQSISGVSTDEELVNLIKFQSSYGAAAKIITTIDQMLDTL 608
flgK PRK07521
flagellar hook-associated protein FlgK; Validated
 1-300 9.67e-23

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236038 [Multi-domain]  Cd Length: 483  Bit Score: 101.93  E-value: 9.67e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   1 MSI---LSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPsqryagsfvgSGVFVSSIDRNVDQFINSQVRST 77
Cdd:PRK07521    1 MSLssaLNTAQSGLTATSRQTSVVSRNIANAGTPGYSRREASLVSGP----------AGGQVVGISRAQDPALLAQRLLA 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  78 LSLKSQFDTFYTQAIQIDKLLS--QDGTSISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQ 155
Cdd:PRK07521   71 TSAAAAQDTLADGLERLASTVGdnDYEGSPSARLSDFQAALQTAASSPDNTTLAQAAVDAAQDLANSLNDASDAVQSARA 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 156 NSTAQISGAVRQINQLTKDIAAINKQLMST----SDSPELLDRRDELLKELSQYTNLSIFDQGDGTISVGIATGDMLVSG 231
Cdd:PRK07521  151 DADAEIADSVDTLNDLLAQFEDANNAVVSGtatgRDASDALDQRDKLLKQISQIVGVTTVTRDNNDMALYTDGGVTLFET 230

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981061856 232 TEQRDLVVGTG--NSGVSGTQVY-----LSNGTGqidiTSRLTSGMLGGLMDYEHDVIAQAGQMIGQMAIGLAQTF 300
Cdd:PRK07521  231 TPRTVTFTPTAtyTAGTTGNAVYidgvpLTGGSG----VMPLAGGSLAALLQLRDEIAPTYQAQLDEIARGLITRF 302
flgK PRK06799
flagellar hook-associated protein FlgK; Validated
 9-257 9.36e-19

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180699 [Multi-domain]  Cd Length: 431  Bit Score: 89.17  E-value: 9.36e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   9 SGLSAFQRAFEVAGNNIANATTKGYSRQTIQF-SPGPSQRYAG-SFVGSGVFVSSIDRNVDQFINSQVRSTLSlksQFDT 86
Cdd:PRK06799   11 SGMLAAQMGLQTTQQNLSNIHTPGYVRQMVNYgSVGASGGLLPeQQIGYGVQTLGVDRITDEVKTKQYNDQLS---QLSY 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856  87 FYTQAIQIDKLLSQDGT----SISTSLQSFFDALGQLNSAPDSISSRSVALKQSQLLVQQFTSMQTKLDEYQQNSTAQIS 162
Cdd:PRK06799   88 YNYMNSALSRVESMVGTtgknSLSSLMDGFFNAFREVAKNPEQANYYDTLISETGKFTSQLNRLAKGLDELEAQTTEDIE 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856 163 GAVRQINQLTKDIAAINKQLMSTSDSP--ELLDRRDELLKELSQYTNLSI-FDQGDGTISVGIATGDMLVSGTEQRDLVV 239
Cdd:PRK06799  168 AHVNEFNRLAKSLAEANKKIGQAGTQVpnQLLDERDRILTEMSKYANIEVsYESMNPNIASVRMNGVLTVNGQDTYPLQL 247

                         250       260
                  ....*....|....*....|..
gi 1981061856 240 GTGNSG----VSGTQVYLSNGT 257
Cdd:PRK06799  248 NKTKEPmefeIYGSEIPLPSGA 269
flgE PRK05682
flagellar hook protein FlgE; Validated
 4-68 1.30e-07

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 54.46  E-value: 1.30e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981061856   4 LSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSP--GPSQRYAGSFVGSGVFVSSIDRNVDQ 68
Cdd:PRK05682    3 FNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADlyANSAGTNPTQVGSGVKVAGVAQQFSQ 69
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-68 2.89e-07

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 53.25  E-value: 2.89e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1981061856   1 MSILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFS---PGPSQRYAGSFVGSGVFVSSIDRNVDQ 68
Cdd:COG1749     2 MMSFNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFAdlvAQSLSGANPTQVGGGVRVASVAQIFTQ 72
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
4-68 4.20e-06

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 48.66  E-value: 4.20e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1981061856   4 LSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQF--------------SPGPSQRYAGSFVGSGVFVSSIDRNVDQ 68
Cdd:COG4786     1 LYTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFedllyqlirrpgapSSQGTQTPVGLQLGTGVRVAATQTDFTQ 79
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 2-68 2.07e-05

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 46.09  E-value: 2.07e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1981061856   2 SILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFSPGPSQ-RYAGSFVGSGVFVSSIDRNVDQ 68
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQsVSGSGQVGGGVRTSGVATDFSQ 68
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 8-132 5.74e-05

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 45.13  E-value: 5.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981061856   8 YSGLSA---FQRAFEVAGNNIANATTKGYSR----------QTIQFSPGPSQRYAG---SFVGSGVFVSSID-------- 63
Cdd:PRK12636    6 YSGISGmknFQTKLDVIGNNIANVNTYGFKKsrvtfkdmvsQTISGASGPTANRGGvnsKQVGLGSQLGAIDtihtqgsl 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981061856  64 ----RNVDQFINSQvrSTLSLKSQFDTFYTQAIQIDklLSQDGTSISTSLQSFFDALGQLNSAPDSISSRSVA 132
Cdd:PRK12636   86 qttgRPLDLAISGD--GFFRVGDGDNTAYTRAGNFY--LDNEGNIVNADGLYLLGMNGGRIQIPTDAQSFSIG 154
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-64 4.10e-04

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 40.96  E-value: 4.10e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1981061856   1 MSILSIAYSGLSAfQRA-FEVAGNNIANATTKG------YSRQTIQFSPGPSQryagSFVGSGVFVSSIDR 64
Cdd:PRK05681    4 FSSFNIAGSGLSA-QSQrLNVISSNIANADSTAapdgdpYRRKQVVFAAELDP----GQGTGGVKVAKIVE 69
Flg_bb_rod pfam00460
Flagella basal body rod protein;
4-33 1.09e-03

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 36.78  E-value: 1.09e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1981061856   4 LSIAYSGLSAFQRAFEVAGNNIANATTKGY 33
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 1-41 3.28e-03

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 39.83  E-value: 3.28e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1981061856   1 MSILSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFS 41
Cdd:PRK12692    1 MRALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFT 41
flgE PRK06803
flagellar basal body protein FlaE;
1-67 4.27e-03

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 39.75  E-value: 4.27e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981061856   1 MSiLSIAYSGLSAFQRAFEVAGNNIANATTKGYSRQTIQFspgpSQRYAGSFVGsGVFVSSIDRNVD 67
Cdd:PRK06803    1 MS-FNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEF----SSIYNGGQPG-GVEVSSVSQNFS 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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