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Conserved domains on  [gi|1980528991|ref|YP_009992000|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Nothoprocta perdicaria]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.49e-165

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 465.45  E-value: 1.49e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   1 MNPYAKLISLLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  81 TGQWDIMFLTNPTSSLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNPTILTLMAVA 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 161 STALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLPTLMISWTKTPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 241 NAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYYSTITLPPNSTNYMKLWYTNKN 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1980528991 321 SYILTAIFSSLSITLLPLSPMILSMF 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.49e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 465.45  E-value: 1.49e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   1 MNPYAKLISLLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  81 TGQWDIMFLTNPTSSLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNPTILTLMAVA 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 161 STALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLPTLMISWTKTPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 241 NAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYYSTITLPPNSTNYMKLWYTNKN 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1980528991 321 SYILTAIFSSLSITLLPLSPMILSMF 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-299 7.35e-34

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.85  E-value: 7.35e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  10 LLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLIS-KSHHPRAVEASIKYFLVQASASALILF-SSLSNAwYTGQWDI- 86
Cdd:COG1007   108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLa 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  87 ----MFLTNPTSSLLLTTAIAM-------KLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNP---- 151
Cdd:COG1007   187 giaaALAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPglaa 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 152 ---TILTLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLI----TSSVFLSLNTTKT 224
Cdd:COG1007   267 dwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAylfmNLGAFAVILLLSR 346

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 225 MNLPTLMIS-----WTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYY 299
Cdd:COG1007   347 KGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-272 2.41e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.07  E-value: 2.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  23 SNHWILAWAGLEINTLAVIPLI-SKSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQWDI----MFLTNPTSS-- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFdelsKALTGGLNSsg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  96 -----LLLTTAIAMKLGLVPFHFWFPEVLQGSSL-ITGLLLSTLIKLPPLTILSQVTYSLNPT-----ILTLMAVASTAL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 165 GGWMGLNQTQTRKILAFSSISHLGWM----SMIIIYDPKLTILTFCLYTLITSSVFL-----SLNTTKTMNLPTLMISWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMlialGAGTIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1980528991 236 KTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVN 272
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 7-343 6.91e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.17  E-value: 6.91e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   7 LISLLSIgLGSLITMSSNHWILAWAGLEINTLAVIPLIS-KSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQWD 85
Cdd:TIGR01770 106 ILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  86 IMFLTNPTSS------------LLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSL---- 149
Cdd:TIGR01770 185 FEDLLLFLSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgf 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 150 ---NPTILTLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTI----LTFCLYTLITSSVFLSL--- 219
Cdd:TIGR01770 265 seaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLGAFGVLsll 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 220 ---NTTKTMNLPTLMISWTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRL 296
Cdd:TIGR01770 345 rsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1980528991 297 AYYstITLPPNSTNYMKLWYTNKNSYILtaIFSSLSITLLPLSPMIL 343
Cdd:TIGR01770 425 VKV--MYFDKPERRIPSNPQSKAQSLLL--SISALFILFLGLFPSLI 467
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.49e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 465.45  E-value: 1.49e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   1 MNPYAKLISLLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  81 TGQWDIMFLTNPTSSLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNPTILTLMAVA 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 161 STALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLPTLMISWTKTPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 241 NAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYYSTITLPPNSTNYMKLWYTNKN 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1980528991 321 SYILTAIFSSLSITLLPLSPMILSMF 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 2.94e-137

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 393.79  E-value: 2.94e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   1 MNPYAKLISLLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWY 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  81 TGQWDIMFLTNPTSSLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTySLNPTILTLMAVA 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIA-PTNPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 161 STALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLPTLMISWTKTPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 241 NAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYYSTITLPPNSTNYMKLW-YTNK 319
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWrLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1980528991 320 NSYILTAIFSSLSITLLPLSPMILSMF 346
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 7.36e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 382.35  E-value: 7.36e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   1 MNPYAKLISLLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWY 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  81 TGQWDIMFLTNPTSSLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNPTILTLMAVA 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 161 STALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLPTLMISWTKTPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 241 NAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYYSTITLPPNSTNYMKLWYTNKN 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*.
gi 1980528991 321 SYILTAIFSSLSITLLPLSPMILSMF 346
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 3.79e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 347.60  E-value: 3.79e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   1 MNPYAKLISLLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWY 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  81 TGQWDIMFLTNPTSSLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNPTILTLMAVA 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 161 STALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLPTLMISWTKTPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 241 NAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYYSTITLPPNSTNY-MKLWYTNK 319
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMkMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 1980528991 320 NSYILTAIFSSLSITLLPLSPMILSMF 346
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.35e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 298.04  E-value: 1.35e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   1 MNPYAKLISLLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWY 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  81 TGQWDIMFLTNPTSSLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNPTILTLMAVA 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 161 STALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLPTLMISWTKTPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 241 NAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYYSTITLPPNSTNYMKLWYTNKN 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1980528991 321 SYILTAIFSSLSITLLPLSPMILSMF 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 3.61e-83

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 256.01  E-value: 3.61e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   1 MNPYAKLISLLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWY 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  81 TGQWDIMFLTNPTSSLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNPTILTLMAVA 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 161 STALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLPTLMISWTKTPSL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 241 NAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYYSTITLPPNSTNYMKLWYTNKN 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330
                  ....*....|....*.
gi 1980528991 321 SYILTAIFSSLSITLL 336
Cdd:MTH00041  321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 2.32e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 191.58  E-value: 2.32e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   1 MNPYAKLISLLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWy 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  81 tgqwdIMFLTNPTSSLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSqvtYSLNPTILTLMAVA 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLS---YLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 161 STALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLPTLMISWTKTPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 241 NAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAyYSTITLPPNSTNYMKLWYTNKN 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRIS-YSSLMLNYNKNKWNLKKKKNKF 311

                         330       340
                  ....*....|....*....|....*
gi 1980528991 321 SYILTaIFSSLSITLLPLSPMILSM 345
Cdd:MTH00160  312 SLILN-FLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-343 2.71e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 165.44  E-value: 2.71e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   5 AKLISLLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  85 DIMfltnptssLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNP-TILTLMAVASTA 163
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 164 LGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLpTLMISWTKTPSLNAV 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYKTGLS 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 244 LLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYYSTITLppnstnyMKLWYTNKNSYI 323
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSS-------SKSKKSNSSKVL 308

                         330       340
                  ....*....|....*....|
gi 1980528991 324 LTAIFSSLSITLLPLSPMIL 343
Cdd:MTH00144  309 NSSIISLNLLGGLLFLLLYL 328
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 15-337 5.03e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 164.57  E-value: 5.03e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  15 LGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSlsnawyTGQWDIMFLTNPTS 94
Cdd:MTH00011   17 LGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNIT 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  95 SLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNPTILTLMAVASTALGGWMGLNQTQ 174
Cdd:MTH00011   91 ALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQ 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 175 TRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLPTLMISWTKTPSLNAVLLMILLSLAGL 254
Cdd:MTH00011  171 LRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 255 PPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAyYSTITLPPNSTNYMKLWYTNKNSYILTaiFSSLSIT 334
Cdd:MTH00011  251 PPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLI-FNFMYLSPTFSSLKSAPYEPKTKILIS--MCTLSLG 327


                  ...
gi 1980528991 335 LLP 337
Cdd:MTH00011  328 LIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 10-331 7.37e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 137.88  E-value: 7.37e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  10 LLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSnawytgqwdiMFL 89
Cdd:MTH00197    4 LFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSL----------SFS 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  90 TNPT---SSLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSqvTYSLNPTILTLMAVASTALGG 166
Cdd:MTH00197   74 NLYLsllSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILA--FNSSSFMGLLICSVLSSLIGG 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 167 WMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLPTlMISWTKTPSLNAVLLM 246
Cdd:MTH00197  152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLG 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 247 I-LLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYYSTITLPPNSTNYMKLWYTNKNSYILT 325
Cdd:MTH00197  231 LsFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILL 310


                  ....*.
gi 1980528991 326 AIFSSL 331
Cdd:MTH00197  311 MMMLPL 316
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-299 7.35e-34

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.85  E-value: 7.35e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  10 LLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLIS-KSHHPRAVEASIKYFLVQASASALILF-SSLSNAwYTGQWDI- 86
Cdd:COG1007   108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLa 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  87 ----MFLTNPTSSLLLTTAIAM-------KLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNP---- 151
Cdd:COG1007   187 giaaALAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPglaa 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 152 ---TILTLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLI----TSSVFLSLNTTKT 224
Cdd:COG1007   267 dwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAylfmNLGAFAVILLLSR 346

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 225 MNLPTLMIS-----WTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYY 299
Cdd:COG1007   347 KGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
10-299 1.80e-29

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 117.61  E-value: 1.80e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  10 LLSIgLGSLITMSSNHWILAWAGLEINTLAVIPLIS-KSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQWDI-- 86
Cdd:PRK05777  110 LFAL-LGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFag 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  87 ---MFLTNPTSSLLLTTAIAM-------KLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNPT---- 152
Cdd:PRK05777  189 iakALADGSGNSLLLLFGLVFllvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAFGGlsed 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 153 ---ILTLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSV------FLSLNTTK 223
Cdd:PRK05777  269 wqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMtlgafgVISLLRRK 348

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 224 TMNLPTL----MISWTKtPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYY 299
Cdd:PRK05777  349 GGEAESIsdfaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKL 427
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 11-296 8.71e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 110.11  E-value: 8.71e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  11 LSIGLGSLITMSSNHWILAWAGLEINTLAVIPLIS-KSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQWDIM-- 87
Cdd:MTH00199  104 LIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQgi 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  88 --FLTNPTSSLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNptILTLMAVASTALG 165
Cdd:MTH00199  184 nsILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYG 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 166 GWMGLNQTQTRKILAFSSISHLGWMSM----------------IIIYdpklTILTFCLYTLItssvfLSLNTTKTMNLPT 229
Cdd:MTH00199  262 AIGALNQTKIKRLLAYSGIGHMGFILFgvaigsfesiqasliyMIIY----VIMSICSFSII-----LSLKLTKGLIVEV 332

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1980528991 230 LMISwTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRL 296
Cdd:MTH00199  333 SGLS-RKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 1.50e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 108.19  E-value: 1.50e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  13 IGLGSLITMSSNHWILAWAGLEINTLAVIPLI-SKSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQWDIMFL-- 89
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYInl 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  90 -----------TNPTSSLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILsqVTYSLNPTILTLMA 158
Cdd:MTH00196   82 vlnsgqsfssvSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSIL--VSIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 159 VASTALGGWMGLNQTQTRKILAFSSISHLGWM-------SMIIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLPTLM 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVlwgieigSFESIQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1980528991 232 ISwTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRL 296
Cdd:MTH00196  240 LS-RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-272 2.41e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.07  E-value: 2.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  23 SNHWILAWAGLEINTLAVIPLI-SKSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQWDI----MFLTNPTSS-- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFdelsKALTGGLNSsg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  96 -----LLLTTAIAMKLGLVPFHFWFPEVLQGSSL-ITGLLLSTLIKLPPLTILSQVTYSLNPT-----ILTLMAVASTAL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 165 GGWMGLNQTQTRKILAFSSISHLGWM----SMIIIYDPKLTILTFCLYTLITSSVFL-----SLNTTKTMNLPTLMISWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMlialGAGTIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1980528991 236 KTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVN 272
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 7-343 6.91e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.17  E-value: 6.91e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   7 LISLLSIgLGSLITMSSNHWILAWAGLEINTLAVIPLIS-KSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQWD 85
Cdd:TIGR01770 106 ILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  86 IMFLTNPTSS------------LLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSL---- 149
Cdd:TIGR01770 185 FEDLLLFLSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgf 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 150 ---NPTILTLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTI----LTFCLYTLITSSVFLSL--- 219
Cdd:TIGR01770 265 seaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLGAFGVLsll 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 220 ---NTTKTMNLPTLMISWTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRL 296
Cdd:TIGR01770 345 rsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1980528991 297 AYYstITLPPNSTNYMKLWYTNKNSYILtaIFSSLSITLLPLSPMIL 343
Cdd:TIGR01770 425 VKV--MYFDKPERRIPSNPQSKAQSLLL--SISALFILFLGLFPSLI 467
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-296 2.46e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 88.28  E-value: 2.46e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  30 WAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQWDIMFLTNPTSSL----------LLT 99
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELdpglllaafaLLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 100 TAIAMKLGLVPFHFWFPEVL-QGSSLITGLLLSTLIKLPP-------LTILSQVTYSLNPTILTLMAVASTALGGWMGLN 171
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFLGTLLLVLGLLTMLVGALGALA 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 172 QTQTRKILAFSSISHLGWMSMII-IYDPklTILTFCLYTLITSSVFLSL---------NTTKTMNLPTLMISWTKTPSLN 241
Cdd:COG0651   293 QRDLKRLLAYSSVSQIGYILLGLgLGTP--LGLAGALFHLLNHALAKALlflaagaieRATGTRDLDKLGGLGKRMPLTA 370

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1980528991 242 AVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRL 296
Cdd:COG0651   371 AAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 4.84e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 79.13  E-value: 4.84e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   3 PYAKLISLLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAV---------EASIKYFLVQASASALILFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  74 SLSNAWYTGQ----WDIMFLTNPTSS----------LLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPL 139
Cdd:MTH00198  267 CALYFGFTGNegmlGTILSATLETTNielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 140 TILSQVTysLNPTILTLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWMSMII-------IYDPKLTILTFCLYTLIT 212
Cdd:MTH00198  347 ILLTSLV--ITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALAS 424

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1980528991 213 SSVFLSL------------------NTTKTMNLPTLMISWTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMIL 267
Cdd:MTH00198  425 FTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 7.61e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 66.18  E-value: 7.61e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   7 LISLLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHP-RAVEASIKYFLVQASASALILF------------- 72
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVYgfswlyglsggei 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  73 --SSLSNAWYTGQwdimfLTNPTSSLL----LTTAIAMKLGLVPFHFWFPEVLQGS-----------SLITGLLLSTlik 135
Cdd:CHL00049  194 elQEIVNGLINTQ-----MYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSptpvvaflsvtSKVAASALAT--- 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 136 lpplTILSQVTYSLNP---TILTLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWMSM-IIIYDPKLTILTFCLYTLI 211
Cdd:CHL00049  266 ----RIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNDGYASMITYMLF 341

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1980528991 212 tsSVFLSLNT----------TKTMNLPTLMISWTKTPSLNAVLLMILLSLAGLPPMSGFMPK 263
Cdd:CHL00049  342 --YIFMNLGTfacivlfglrTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-287 1.53e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 65.12  E-value: 1.53e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  33 LEINTLAVIPLIS-KSHHPRAVEASIKYFLVQASASALILFSSlsnAWYTGQWDI-------------MFLTNPTSSLLL 98
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  99 TTAIAMKLGLVPFHFWFPEVL-QGSSLITGLLLstLIKLPPLTILSQVTYSL-----NPT----ILTLMAVASTALGGWM 168
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYpAAPSSISAMLL--VIKQAGLYALARVLFSIygpaiNLAtvgwVIIILGCLTMFVGVAM 304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 169 GLNQTQTRKILAFSSISHLGWM------SMIIIYDPKLT----------ILTFCLYTLITSSVFLS----LNTTKTMNLP 228
Cdd:PRK08376  305 AVVQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLN 384

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1980528991 229 TLMISWTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQE--LVNQEMVPMAIMISMLSL 287
Cdd:PRK08376  385 ELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESsaLFNPILGVIAMIGSVLTL 445
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 7-298 1.60e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 65.40  E-value: 1.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   7 LISLLSIGlGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHpRAVEASIKYFLVQASASALILFSSLSNAWYTGQWDI 86
Cdd:PRK08668  102 MFALMSLA-GVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDF 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  87 ----MFLTNPTSS-------LLLTTAIAMKLGLVPFHFWFPE-----------VLQG--SSLITGLLLSTLIKLPPLTIL 142
Cdd:PRK08668  180 adisQGLINDTSTgfalivfLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGqlSKLGAYGFLLVLYVLPGTKLF 259

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 143 SQV-TYSLNPT---ILTLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWmsmIIIYDPKLTILTF------------- 205
Cdd:PRK08668  260 SEFgTYRGVPLfnyILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvfnhalf 336

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 206 -CLYTLITSSVFLSLNTTKTMNLPTLMiswTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISM 284
Cdd:PRK08668  337 kGLFFLIFAAVIYRTGTTKISEMGGLI---EKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFF 413

                         330
                  ....*....|....
gi 1980528991 285 LSLLGLFFYLRLAY 298
Cdd:PRK08668  414 GSIGSFLYVFRPLA 427
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.94e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 64.69  E-value: 1.94e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  50 PRAVEASIKYFLVQASASALILF-SSLSNAWYTGQWD-----IMFLTNPTSSLLLT-----TAIAMKLGLVPFHFWFPEV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQlsaiaLALITSPSLGLALAlvfviAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 119 LQGSSLITGLLLSTLIKLP----PLTILSQVTYSLNP---TILTLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWMS 191
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 192 MIIIYDPKLTILTFCLYTLI---------TSSVFLSLNTTktmnlpTLMIS-----WTKTPSLNAVLLMILLSLAGLPPM 257
Cdd:PRK02504  317 IGLVAGTEAGYASMVFYLLAylfmnlgafACVILFSLRTG------TDQISdyaglYQKDPLLTLGLSLCLLSLGGIPPL 390


                  ....*.
gi 1980528991 258 SGFMPK 263
Cdd:PRK02504  391 AGFFGK 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-267 2.59e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 64.33  E-value: 2.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  38 LAVIP---LISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQW--DIMFLTNPTSS--------LLLTTAIAM 104
Cdd:COG1008   142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPltaqlllfLAFFIAFAV 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 105 KLGLVPFHFWFPEVLQ-----GSSLITGLLLST----LIKLPpLTILSQVTYSLNPTILTLmAVASTALGGWMGLNQTQT 175
Cdd:COG1008   222 KVPMFPFHTWLPDAHVeaptaGSVLLAGVLLKMggygLLRFA-LPLFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDL 299

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 176 RKILAFSSISHLGWMSMIIiydpkltiltFCLYT--------------LITSSVFLSL----NTTKTMNLPTLMISWTKT 237
Cdd:COG1008   300 KRLIAYSSVSHMGFVLLGI----------FALNPlglqgavlqmvshgLITAALFLLVgvlyDRTHTRDIADLGGLAKRM 369

                         250       260       270
                  ....*....|....*....|....*....|
gi 1980528991 238 PSLNAVLLMILLSLAGLPPMSGFMPKWMIL 267
Cdd:COG1008   370 PVLAALFLLAALASLGLPGTSGFVGEFLVL 399
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-299 1.03e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 59.51  E-value: 1.03e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  33 LEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQWDIMFLTN--PTSSLLLT------TAIAM 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalAENPTVVTafgfvlLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 105 KLGLVPFHFWFPEVLQGSSLITGLLLSTLIKLPPLTILSQVTYSLNP----------TILTLMAVASTALGGWMGLNQTQ 174
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGgdfrfalglgWLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 175 TRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYT----LITSSVFLSLN----TTKTMNLPTLMISWTKTPSLNAVLLM 246
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAAGaievTYGTRRLSELSGLGRRMPLTAAAFAV 374

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1980528991 247 ILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYY 299
Cdd:PRK08375  375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYR 427
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 4.59e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 57.64  E-value: 4.59e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  50 PRAVEASIKYFLVQASASALILFSSLSNAWYTGQ-WDIMFLTNPTSSLLLTT--------AIAMKLGLVPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELLNLPLPFGVQTwlflaffiAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 120 QGSSLITGLLLSTLIKLPP-------LTILSQVTYSLNPTILTLmAVASTALGGWMGLNQTQTRKILAFSSISHLGWMSM 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTygflrfnLPLFPDASLYFAPVLAAL-GVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 193 IIIYDPKLTILTFCLYT----LITSSVFLSLNT----TKTMNLPTLMISWTKTPSLNAVLLMILLSLAGLPPMSGFMPKW 264
Cdd:TIGR01972 311 GIFSFNELGISGAVFQMishgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390


                  ....
gi 1980528991 265 MILQ 268
Cdd:TIGR01972 391 LILL 394
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-298 1.88e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 55.93  E-value: 1.88e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  23 SNHWILAWAGLEINTLAVIPLISKSHH-PRAVEASIKYFLVQASASALILFSSLSNAWYTGQWDI--MF--LTNPTSSLL 97
Cdd:COG1009   130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFseLLaaAPTILSSPL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  98 LTTAIAM-------KLGLVPFHFWFPEVLQG----SSLI-------TGLLLstLIKLPPLtilsqvtYSLNPTILTLMAV 159
Cdd:COG1009   210 LTLILLLlllgafgKSAQFPLHFWLPDAMEGptpvSALLhaatmvkAGVYL--LARLSPL-------FALSPVWLTVVAI 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 160 --ASTAL-GGWMGLNQTQTRKILAFSSISHLGWMSMIIiydpKLTILTFCLYTLITSSVFLSL---------NTTKTMNL 227
Cdd:COG1009   281 igAITALfAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFFKALlflgagsviHATGTRDI 356

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1980528991 228 PTLMISWTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISML--SLLGLFFYLRLAY 298
Cdd:COG1009   357 RKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALlgAFLTAFYSFRLFF 429
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 89-279 3.94e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 54.93  E-value: 3.94e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  89 LTNPTSSLLLTTAIAM-------KLGLVPFHFWFPEVLQGSSLITGLLLST--------LI-KLPPLTILSQVTYslnPT 152
Cdd:PRK12644  193 LADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAamvkagiyLVaRLAPGFADVPVWR---PT 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 153 ILTLmAVASTALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIY---DPKLTILTF-CLYTLITSSVFLSL----NTTKT 224
Cdd:PRK12644  270 VLVL-GLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIgtrDAALAGLAMlLAHALFKAALFLVVgiidHSTGT 348

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1980528991 225 MNLPTLMISWTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMA 279
Cdd:PRK12644  349 RDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPA 403
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-280 6.97e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 53.80  E-value: 6.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  33 LEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQWDIMFLTN--PTSSLLLTTAIAMKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 111 FHFWFPEVLQGSSLITGLLLSTLI---KLPPLTILSQVTYSLNPtILTLMAVASTALGGWMGLNQTQTRKILAFSSISHL 187
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVvkaGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 188 GWmsmiIIYDPKLTILTFCLYTLITSSVFLSLNTTKTMNLpTLMISWTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMIL 267
Cdd:PRK07234  282 GF----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNF-TELISQMLGIGKWIPLTMASFSIAGFPLLAGFVSKVLTL 356

                         250
                  ....*....|...
gi 1980528991 268 QELVNQEMVPMAI 280
Cdd:PRK07234  357 KNLLPWQAIALNL 369
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-315 2.97e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 51.87  E-value: 2.97e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  92 PTSSLLLTTAIAMKLGLVPFhFWFPEV-----LQGSSLITGLL----LSTLIKLppLTILSQVTYSLNPTILTLMAVAST 162
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAyhtpnTEVAALFAALLtkvgIYALIRV--FTLLFPQERELLHPLLATMAAITM 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 163 ALGGWMGLNQTQTRKILAFSSISHLGWMSM------------IIIYDPKLTILTFCLYTLITSSVFLslntTKTMNLPTL 230
Cdd:PRK12663  284 VIGALGALAYKDIRRIAGYQVISSIGFILLglalgtpagingAIFYLVHDMVVKTALFLIAGSLVRL----TGYRSLQYL 359

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 231 MISWTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQ---ELVNQEMVPMAIMISMLSLLGLFFYLRLAYYSTITLPPN 307
Cdd:PRK12663  360 GGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgalDNGAYILLALMLITSLITMYSLFRIFFLAYWGDKDGEEV 439


                  ....*...
gi 1980528991 308 STNYMKLW 315
Cdd:PRK12663  440 NFKPIPLY 447
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-308 1.35e-06

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 49.64  E-value: 1.35e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  34 EINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQWDI-----MFLTNPTS------SLLLTTAI 102
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNItdihnALLVNPTSpviyggLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 103 AMKLGLVPFHFWFPEV-----------LQGSSLITGLLLSTLIklppLTILSQVTY-SLNPTILTLMAVASTALGGWMGL 170
Cdd:PRK06277  210 LYGSGLPPFHTIKSDIyakakpfgsalLQTFSKFVLVALMLVI----FKLFGGLSYfPSAQGVLIALSVLAMVFGVVMAL 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 171 NQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYT----LITSSVFLS----LNTTKTMNLPTLMISWTKTPSLNA 242
Cdd:PRK06277  286 LQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGagivSYRTKTSNLRKLGGLLPVMPVVAF 365

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1980528991 243 VLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSlLGLFFYLRLAYYStITLPPNS 308
Cdd:PRK06277  366 MVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVS-IGTFVSMMKAFYL-IYLKPKP 429
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 1.10e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 42.24  E-value: 1.10e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1980528991 291 FFYLRLAYYSTITLPPNSTNYMKLWYTNKNS-YILTAIFSSLSITLLPLSP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKnTLLLPTLTTLSILLLPLTP 51
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 28-274 2.85e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 45.79  E-value: 2.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  28 LAWaglEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSSLSNAWYTGQ--WDIMFLTNPTSSLLLT------ 99
Cdd:PRK12561  114 LMW---ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELGAKSYPLALElllyag 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 100 --TAIAMKLGLVPFHFWFPEV-----LQGSSLITGLLLST----LIKLPpLTILSQVTYSLNPtILTLMAVASTALGGWM 168
Cdd:PRK12561  191 flIAFGVKLPIFPLHTWLPDAhgeasAPVSMILAGVLLKMggyaLIRFN-VQMLPDAHVYFAP-ALAILGVVNIIYGALN 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 169 GLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTI----LTFCLYTLITSSVFL----SLNTTKTMNLPTLMISWTKTPSL 240
Cdd:PRK12561  269 AFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGIsgamLQMISHGLIAAALFFltgvTYERTHTLSIPNMGGLAKVMPKT 348

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1980528991 241 NAVLLMILLSLAGLPPMSGFMPKWMILQELVNQE 274
Cdd:PRK12561  349 FALFTASSMASLALPGMSGFVSELTVFLGITSSD 382
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 4-288 7.95e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 44.40  E-value: 7.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991   4 YAKLISLLSIG--LGSLITMSSNHWILAWAGLEINTLA---VIPLISKSHHPRAVEASIKYFlvqasASALILFSSLSNA 78
Cdd:PRK06459   70 YGKWLSSLYILtiLGMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFVFMAFGEL-----STVLILAGFAWAF 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  79 WYTGQWDIMFLTNPTSSLLLTTAIAMKLGLVPFHF--WFPEV---------LQGSSLITGLLLSTLIKLPPLTILSQVTY 147
Cdd:PRK06459  145 IISGTTNFSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAhgnapsnfsAILSATMTLMGVYGILKMTILTQTIPIGY 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 148 SlnPTILTLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWM-----SMIIIYDPKLTILTFCLYTLITSS-------- 214
Cdd:PRK06459  225 F--GLTILAIGAFSILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSfahsvakt 302

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1980528991 215 -VFLSLNTTKTMNLPTLMISWTKTPSLNAVLLMIllSLAGLPPMSGFMPKWMILQELVnQEMVPMAIMISMLSLL 288
Cdd:PRK06459  303 gLFLSSGLQEKQSITYSKKIRNRWIELGLTLLAS--SLSGLLPNIGGVASWLLLESLF-MFAYVLHNVISILFIV 374
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 8.77e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 44.31  E-value: 8.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  55 ASIKYFLVQASASALILFSSLSNAWYTGQWDIMFLTNPTSSLLLTTAI----------AMKLGLVPFHFWFPEV-LQGSS 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLPLSTQLlllapilvgfGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1980528991 124 LITGLLLSTLIKLPP-------LTILSQVTYSLNPTILTLmAVASTALGGWMGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK06473  238 PVSVLLAGVLLKLGTygllrfgVGLFPEAWVYLAPWLATW-AVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 18-292 1.19e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 43.77  E-value: 1.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  18 LITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSS----------LSNAWYTGQW-DI 86
Cdd:PRK06458  122 LLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWtEL 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  87 MFLTNPTSSLLLTTAIAM-------KLGLVPFHFWFPEVLQG-----SSLITGLLL--STLIKLPPLTILSQVTYSLNP- 151
Cdd:PRK06458  202 LKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEapspvSALLSGVLLnvALYAVLRYYILIDAAIGSDFPg 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 152 TILTLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYT----LITSSVFLSLNT------ 221
Cdd:PRK06458  282 RLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMlnhsLTKSAIFFASGNvlqkyg 361

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1980528991 222 TKTMNLPTLMIswTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEmvPMAIMISMLSLLGLFF 292
Cdd:PRK06458  362 TRDINVIRGLL--KVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARG--PLLIAILLLLLLTLAF 428
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 82-345 1.71e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 43.22  E-value: 1.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  82 GQWDIMFLT----NPTSSLLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLST---------LIKLPPLtiLSQvTYS 148
Cdd:MTH00207  165 GHWSITNMWqtdmNNYIALSIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSStlvtagvflLIRFYPF--LSS-TYW 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 149 LNPTILtLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWMSMIIiydpKLTILTFCLYTLITSSVFLSL--------- 219
Cdd:MTH00207  242 FNPALL-LTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASL----GLGMPKLALFHLITHALFKALlfvcagsli 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 220 -NTTKTMNLPTLMISWTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAY 298
Cdd:MTH00207  317 hSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFT 396

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1980528991 299 YSTITLPPNSTNYMKLWYTNKNSYI------LTAIFSSLSIT---LLPLSPMILSM 345
Cdd:MTH00207  397 LAVLWSPNSSSPYHHLEDEDKSLTTpmllltLGAITSGSALNwwlPTPQEEPILPL 452
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 23-292 2.71e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 42.43  E-value: 2.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  23 SNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASA------SALILFSSLSNAWYTG--QWDIMFLTNP-- 92
Cdd:PRK08676  121 SDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGtlNWTELAAHASll 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  93 ------TSSLLLTTAIAMKLGLVPFHFWFPEV-LQGSSLITGLLLSTLIKLPPLTIL--------SQVTYSLNPTILTLm 157
Cdd:PRK08676  201 spsvlgASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILrlsallrqSGAAEQFSNVLIGL- 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 158 AVASTALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTL----ITSSVFLS---LNTTKTMNLPTL 230
Cdd:PRK08676  280 GIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLahslVKSGLFFSagiLHRQYRSDRFDR 359

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1980528991 231 MISWTKTPSLNAVLLMI-LLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFF 292
Cdd:PRK08676  360 IFDVFRLQPVAAWGVILgSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAASSF 422
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-285 4.02e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 42.21  E-value: 4.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 109 VPFHFWFPEVLQGSSLITGLLLS-TLIKLPPLTILsqvtySLNP---------TILTLMAVASTALGGWMGLNQTQTRKI 178
Cdd:PRK12647  212 FPFHFWLPNAMEAPTPVSAYLHSaTMVKAGIYLLA-----RLNPvlggtplwqTILPLFGGLTMLTGALLAVRQTDLKLI 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 179 LAFSSISHLGWMSMIIIYDPKLTILTFCLY----TLITSSVFLSLNT----TKTMNLPTLMISWTKTPSLNAVLLMILLS 250
Cdd:PRK12647  287 LAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTGTRDITKLGGLRRAMPITAAAALLAALS 366

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1980528991 251 LAGLPPMSGFMPKWMILQELVNQEMVPMAIMISML 285
Cdd:PRK12647  367 MAGLPPLFGFLAKELIYEALLEAPLWSLILTVAAV 401
PRK12650 PRK12650
DUF4040 family protein;
98-263 5.30e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.95  E-value: 5.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  98 LTTAIAM--------KLGLVPFHFWFPEVLQGSSLITGLL---------LSTLIKLPPLtilsqvtYSLNPT--ILTLMA 158
Cdd:PRK12650  206 LTTVVAVliavaaftKSAQFPFHFWLPEAMAAITPVSAFLhaaavvkagIYLLLRFSPV-------FHDVAVwnWLLIIV 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 159 VASTAL-GGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYT----LITSSVFLSL----NTTKTMNLPT 229
Cdd:PRK12650  279 GMITALmGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRR 358

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1980528991 230 LMISWTKTPSLNAVLLMILLSLAGLPPMSGFMPK 263
Cdd:PRK12650  359 LGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-192 6.29e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 41.55  E-value: 6.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  52 AVEASIKYFLVQASASALILFSSLSNAWYTGQWDIMFLTNPTSSLLLTTAIAMKLGLV----------------PFHFWF 115
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 116 PEVLQGSSLITGLL-LSTLI--------KLPPLtilsqvtYSLNPTILTLMAV--ASTA-LGGWMGLNQTQTRKILAFSS 183
Cdd:PRK07376  251 PDAMEGPTPISALIhAATMVaagvflvaRMYPV-------FEQFPAVMTVIAWtgAITAfLGASIALTQNDIKKGLAYST 323


                  ....*....
gi 1980528991 184 ISHLGWMSM 192
Cdd:PRK07376  324 ISQLGYMVM 332
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-300 6.49e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 41.31  E-value: 6.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  10 LLSIGLGSLITMSSNHWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASALILFSS---LSNAWYTGQWDI 86
Cdd:PRK06591  121 LLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATLILIAIgflLSITGSLNMTDI 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  87 M-FLTNPTSSLLLTTAIA-------MKLGLVPFHFWFPEV-----------LQGSSLITG---LLLSTLIKLPPLTILSQ 144
Cdd:PRK06591  201 AaYLQEHTNSRIITIAIGffligaiLKTAFFPMHFWMMRAynntasvilvyLAGISTIIGiyiIYKFTYIIIGYETIKTA 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 145 VTYSLNPTILTLMAVAStalggWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTLITSSVFLSLnttkt 224
Cdd:PRK06591  281 ITNFIRPIALATLIIAP-----YFAYQAKNFKNIIIYSCFTQIGYVFLLYVTENGIIILPSLLLADSINKIALFL----- 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1980528991 225 mnLPTLMISWTKTPsLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRLAYYS 300
Cdd:PRK06591  351 --IDAYNESYKREP-NKVLIIIAIICSCGLPISPLFFIKVNILELLLTQNLLLDFIIILLSSVGSLFYHYKMVLLL 423
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-290 6.82e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 41.64  E-value: 6.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  55 ASIKYFLVQASASALILFSSLSNAWYTGQWDIMFLTNPTSS-----LLLTTAIAMKLGLVPFHFWFPEVLQGS-SLITGL 128
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASpSNVSAL 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 129 LLSTLIKLPPLTILSQVTYSLNPTI----LTLMAVASTALGGWM-GLNQTQTRKILAFSSISHLGwmsmIIIYDPKLTIL 203
Cdd:PRK08667  243 MSGVMLKVAVYGLVRFLMDVLSPELwwgvLILLAGSISALLGVIyALKEHDLKGLLAYSSIENIG----IILMGIGLYVI 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 204 tFCLYTL-------ITSSVFLSLN-----------------TTKTMNLPTLMISWTKTPSLNAVLLMILLSLAGLPPMSG 259
Cdd:PRK08667  319 -FGVYGLdtlallaLGGALFHSLNhalfksllfltagsvvhATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNG 397

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1980528991 260 FMPKWMILQELVNQ----EMVPMAIMISMLSLLGL 290
Cdd:PRK08667  398 FASELLLYESFFQSfsvaDPLIKILLFSVLAIFAL 432
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-267 6.93e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 41.34  E-value: 6.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  50 PRAVEASIKYFLVQASASALILFSSLSNAWY----TGQWDIMFLTNPTSSLLLTT--------AIAMKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 118 VLQ-----GSSLITGLLLST----LIKLPpLTILSQVTYSLNPTILTLmAVASTALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMgaygLLRFS-LPLFPDASHEFAPIIITL-GVIAIIYGALVALAQTDIKKLIAYSSISHMG 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 189 WMSMIIIYDPKLTILTFCLYT----LITSSVFLSLNTTKTmNLPTLMIS-----WTKTPSLNAVLLMILLSLAGLPPMSG 259
Cdd:PRK05846  315 FVTLGIFAGNQLGIQGAIFQMishgLSSAALFLLVGVLYD-RLHTRDIAdygglAKVMPVLAAFFLFFAMASLGLPGTSG 393


                  ....*...
gi 1980528991 260 FMPKWMIL 267
Cdd:PRK05846  394 FVGEFLIL 401
PRK12646 PRK12646
DUF4040 family protein;
110-288 7.52e-04

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 41.28  E-value: 7.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 110 PFHFWFPEVLQGSSLITGLLLST---------LIKLPPLTILSQVTYslnpTILTLMAVASTALGGWMGLNQTQTRKILA 180
Cdd:PRK12646  228 PFHIWLPRAMAAPTPVSAYLHSAtmvkagiflLFRFTPLLGLSNMYI----YIVTFVGLITMLFGSITALKQWDLKGILA 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 181 FSSISHLGW-MSMIII--------YDPKLTILTFCLYT----LITSSVFLSL---------NTTKTMNLPTLMISWTKTP 238
Cdd:PRK12646  304 YSTISQLGMiMAMVGIgggyaqhqQDAIASIYVFVLFAalfhLMNHAIFKCAlfmgvgiidHEAGTRDIRILSGMRQLFP 383

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1980528991 239 SLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLL 288
Cdd:PRK12646  384 KMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQTGQLSQFSLISMIIIV 433
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 1.43e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.47  E-value: 1.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  55 ASIKYFLVQASASALILFSSLSNAWYTGQWDIMF-------LTNPTSSLLLTTAI---AMKLGLVPFHFWFPEV-LQGSS 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYdaistqnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 124 LITGLLLSTLIKLPPLTILS------QVTYSLNPTILTLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYD 197
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLLRfglqlfPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 198 PKLTILTfCLYTLITSSVFLSL------------NTTKTMNLPTLMISWTKTPSLNAVLLMILLSLAGLPPMSGFMPKWM 265
Cdd:PRK07363  318 TQLSLLG-AVAQMISHGLILALlfhlvgiverkvGTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFI 396


                  ...
gi 1980528991 266 ILQ 268
Cdd:PRK07363  397 VFQ 399
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-265 1.46e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.29  E-value: 1.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 101 AIAMKLGLVPFHFWFPEV-----LQGSSLITGLLLST----LIKLpPLTILSQVTYSLNPTILTlMAVASTALGGWMGLN 171
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLggygLVRL-SWPILPLGAQNLAPAVIA-MGIVGIVYGSFATCR 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 172 QTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLYTL---ITSSVFLSLNTTKTMNLPTLMISWTKTPSLNAVL---L 245
Cdd:MTH00226  317 QIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLahgIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIwgtI 396

                         170       180
                  ....*....|....*....|..
gi 1980528991 246 MILLSLAGL--PPMSGFMPKWM 265
Cdd:MTH00226  397 MIVTSLANVavPPSGNFIGEYL 418
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-296 1.80e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.10  E-value: 1.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 152 TILTLMAVASTALGGWMGLNQTQTRKILAFSSISHLGWMSMIIIYDPKLTILTFCLY----TLITSSVFL-------SLN 220
Cdd:PRK12662  280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMvsgsisyHFG 359

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1980528991 221 TTKTMNLPTLmisWTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISMLSLLGLFFYLRL 296
Cdd:PRK12662  360 TTKLEDCLNL---WKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 96-268 2.74e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 39.43  E-value: 2.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  96 LLLTTAIAMKLGLVPFHFWFPEVLQGSSLITGLLLSTLI-KLPPLTILSQVTYSLNP-----TILTLMAVASTALGGWMG 169
Cdd:PRK08042  184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVmKIGLLGILTLSLLGGNAplwwgVALLVLGMITAFVGGLYA 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 170 LNQTQTRKILAFSSISHLGWMSM--------IIIYDPKLTILTFC--LYTLITSSVFLSL---------NTTKTMNLPTL 230
Cdd:PRK08042  264 LMEHNIQRLLAYHTLENIGIILLglgagvtgIALEQPALIALGLVggLYHLLNHSLFKSVlflgagsvwFRTGHRDIEKL 343

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1980528991 231 MISWTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQ 268
Cdd:PRK08042  344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQ 381
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-284 5.80e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 38.26  E-value: 5.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  10 LLSIGLGSLITMSSNhWILAWAGLEINTLAVIPLISKSHHPRAVEASIKYFLVQASASAL-------ILFSSLSNAWYTG 82
Cdd:PRK06589  123 NLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLlflpaviLIYTKTGNLDFVS 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991  83 QWDIMFLTNPTSSLLLTTAIAmKLGLVPFHFWFPEVLQGSSLITGLLLSTLI-KLPPLTILSQVTYSLNPTILT------ 155
Cdd:PRK06589  202 GGLFSKNQSIILLLMFIYGIA-KTAIFPVHSWLPAAMVAHYPVSALLHAVIVvKTGLFCIYKILLYIFGLSYLQrifaef 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528991 156 ----LMAVASTALGGWMGLNQTQTRKILAFSSISHLGW--MSMIIIYDPKLTILTFCLYT--LITSSVFLSLNT----TK 223
Cdd:PRK06589  281 nwliFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVShsFAKICLFYSMGSiyslKK 360

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1980528991 224 TMNLPTLMISWTKTPSLNAVLLMILLSLAGLPPMSGFMPKWMILQELVNQEMVPMAIMISM 284
Cdd:PRK06589  361 EDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVML 421
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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