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Conserved domains on  [gi|1980528990|ref|YP_009991999|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Nothoprocta perdicaria]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-320 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 613.06  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   1 MMNYLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLA 80
Cdd:MTH00111    4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  81 LLLALTIWAPLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSG 160
Cdd:MTH00111   84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 161 NYTLNTLATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMT 240
Cdd:MTH00111  164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 241 TILFINPSSLNLSPELFPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTSMPISFAGLPPHL 320
Cdd:MTH00111  244 TILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-320 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 613.06  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   1 MMNYLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLA 80
Cdd:MTH00111    4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  81 LLLALTIWAPLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSG 160
Cdd:MTH00111   84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 161 NYTLNTLATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMT 240
Cdd:MTH00111  164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 241 TILFINPSSLNLSPELFPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTSMPISFAGLPPHL 320
Cdd:MTH00111  244 TILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
NADHdh pfam00146
NADH dehydrogenase;
9-305 1.48e-115

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 335.60  E-value: 1.48e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   9 LSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLALLLALTIW 88
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  89 APLPI--PFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGNYTLNT 166
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 167 LATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMTTILFIn 246
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL- 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1980528990 247 psSLNLSPELFP--LILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLW 305
Cdd:pfam00146 242 --GGWLGPFPLPglLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-301 2.74e-105

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 310.52  E-value: 2.74e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   4 YLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLALLL 83
Cdd:COG1005    11 TLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIP 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  84 ALTIWAPLPI--PFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGN 161
Cdd:COG1005    91 ALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 162 YTLNTLATTQE-PLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMT 240
Cdd:COG1005   171 LNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALA 250

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1980528990 241 TILF--------INPSSLNLSPelfPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 301
Cdd:COG1005   251 TTLFlggwlgpfPILPLGGLPG---ILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-320 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 613.06  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   1 MMNYLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLA 80
Cdd:MTH00111    4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  81 LLLALTIWAPLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSG 160
Cdd:MTH00111   84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 161 NYTLNTLATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMT 240
Cdd:MTH00111  164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 241 TILFINPSSLNLSPELFPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTSMPISFAGLPPHL 320
Cdd:MTH00111  244 TILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-320 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 522.63  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   1 MMNYLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLA 80
Cdd:MTH00134    5 LITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  81 LLLALTIWAPLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSG 160
Cdd:MTH00134   85 LTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 161 NYTLNTLATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMT 240
Cdd:MTH00134  165 GFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLS 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 241 TILFINPSSLNLSPELFPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTSMPISFAGLPPHL 320
Cdd:MTH00134  245 AILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 511.09  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   1 MMNYLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLA 80
Cdd:MTH00071    4 LISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  81 LLLALTIWAPLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSG 160
Cdd:MTH00071   84 LTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 161 NYTLNTLATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMT 240
Cdd:MTH00071  164 GFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLS 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1980528990 241 TILFINPSSLNLSPELFPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTSMPISFAGLPP 318
Cdd:MTH00071  244 TILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 9-320 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 509.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   9 LSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLALLLALTIW 88
Cdd:MTH00104    7 LLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMW 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  89 APLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGNYTLNTLA 168
Cdd:MTH00104   87 IPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLI 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 169 TTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMTTILFINPS 248
Cdd:MTH00104  167 TTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAF 246

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1980528990 249 SLNLSPELFPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTSMPISFAGLPPHL 320
Cdd:MTH00104  247 HNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 1-318 5.99e-148

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 418.16  E-value: 5.99e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   1 MMNYLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLA 80
Cdd:MTH00218    1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  81 LLLALTIWAPLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSG 160
Cdd:MTH00218   81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 161 NYTLNTLATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMT 240
Cdd:MTH00218  161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1980528990 241 TILFINPSSLNLSpelfpliLATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTSMPISFAGLPP 318
Cdd:MTH00218  241 VILFLGTSLTTIN-------LMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 4-320 1.57e-146

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 415.14  E-value: 1.57e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   4 YLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLALLL 83
Cdd:MTH00040    6 FLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  84 ALTIWAPLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGNYT 163
Cdd:MTH00040   86 ALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFS 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 164 LNTLATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMTTIL 243
Cdd:MTH00040  166 LSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVIL 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1980528990 244 FINPSS-LNLSPELFPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTSMPISFAGLPPHL 320
Cdd:MTH00040  246 FLGGGSpFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPPNY 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 1-315 1.84e-119

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 345.96  E-value: 1.84e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   1 MMNYLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLA 80
Cdd:MTH00195    1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  81 LLLALTIWAPLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSG 160
Cdd:MTH00195   81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 161 NYTLNTLATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMT 240
Cdd:MTH00195  161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1980528990 241 TILFINPSSLnlspelfpLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTSMPISFAG 315
Cdd:MTH00195  241 TILFLGGGGT--------IIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 2-302 1.45e-117

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 341.08  E-value: 1.45e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   2 MNYLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLAL 81
Cdd:MTH00143    1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  82 LLALTIWAPLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGN 161
Cdd:MTH00143   81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 162 YTLNTLATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMTT 241
Cdd:MTH00143  161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1980528990 242 ILFInpSSLNLSPELFPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAF 302
Cdd:MTH00143  241 VLFF--GGSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-313 1.17e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 338.67  E-value: 1.17e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   1 MMNYLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLA 80
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  81 LLLALTIWAPLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSG 160
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 161 NYTLNTLATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMT 240
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1980528990 241 TILFINPSSLNLspeLFPLilatKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTSMPISF 313
Cdd:MTH00193  241 VLMFLGGDLLSL---LFYL----KLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
9-305 1.48e-115

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 335.60  E-value: 1.48e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   9 LSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLALLLALTIW 88
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  89 APLPI--PFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGNYTLNT 166
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 167 LATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMTTILFIn 246
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL- 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1980528990 247 psSLNLSPELFP--LILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLW 305
Cdd:pfam00146 242 --GGWLGPFPLPglLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 2-308 3.20e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 319.67  E-value: 3.20e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   2 MNYLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLAL 81
Cdd:MTH00225    1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  82 LLALTIWAPLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGN 161
Cdd:MTH00225   81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 162 YTLNTLATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMTT 241
Cdd:MTH00225  161 YNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1980528990 242 ILFINPSSLnlspeLFPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTS 308
Cdd:MTH00225  241 ILFFGGFFV-----TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-318 6.43e-108

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 317.05  E-value: 6.43e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   1 MMNYLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLA 80
Cdd:MTH00054    1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  81 LLLALTIWAPLPI--PFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITL 158
Cdd:MTH00054   81 LTLAFIAWGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLC 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 159 SGNYTLNTLATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNM 238
Cdd:MTH00054  161 VGSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMST 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 239 MTTILFINPSSLNLSPELFP---LILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTSMPISFAG 315
Cdd:MTH00054  241 FGVILFLGGWLVISGPTSYFsnfVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNA 320


                  ...
gi 1980528990 316 LPP 318
Cdd:MTH00054  321 LPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 4-318 1.25e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 316.68  E-value: 1.25e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   4 YLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLALLL 83
Cdd:MTH00216    8 YLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  84 ALTIWA--PLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGN 161
Cdd:MTH00216   88 ALIVWGviPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGS 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 162 YTLNTLATTQEP-LYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMT 240
Cdd:MTH00216  168 LSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 241 TILFINpSSLNLSPELF--PLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTSMPISFAGLPP 318
Cdd:MTH00216  248 TILFLG-GWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-301 2.74e-105

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 310.52  E-value: 2.74e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   4 YLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLALLL 83
Cdd:COG1005    11 TLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIP 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  84 ALTIWAPLPI--PFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGN 161
Cdd:COG1005    91 ALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 162 YTLNTLATTQE-PLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMT 240
Cdd:COG1005   171 LNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALA 250

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1980528990 241 TILF--------INPSSLNLSPelfPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 301
Cdd:COG1005   251 TTLFlggwlgpfPILPLGGLPG---ILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
4-305 4.16e-101

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 299.80  E-value: 4.16e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   4 YLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLALLL 83
Cdd:PRK06076   12 ILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIP 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  84 ALTIWAPLPI--PFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGN 161
Cdd:PRK06076   92 AFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGS 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 162 YTLNTLATTQEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMTT 241
Cdd:PRK06076  172 LNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALIT 251

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1980528990 242 ILFI---NPSSLNLSPELFPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLW 305
Cdd:PRK06076  252 TLFLggwLPPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 13-318 2.09e-89

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 270.73  E-value: 2.09e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  13 IPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLALLLALTIWAPLP 92
Cdd:MTH00029   18 VPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVT 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  93 IP--FSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGNYTLNTLATT 170
Cdd:MTH00029   98 MDqgVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVIS 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 171 QEPLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMTTILFINP--S 248
Cdd:MTH00029  178 QRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGGwlS 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 249 SLNLSPELFPLILA--------------TKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLWHTSMPISFA 314
Cdd:MTH00029  258 PLDGIPTPPEAFSIfeqiasskssfwffTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIGFN 337


                  ....
gi 1980528990 315 GLPP 318
Cdd:MTH00029  338 GVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 12-313 3.23e-85

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 258.94  E-value: 3.23e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  12 MIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLALLLALTIWAPL 91
Cdd:MTH00010   13 YVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  92 PIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGNYTLNTLATTQ 171
Cdd:MTH00010   93 PHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQ 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 172 EPLYLVFsTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMTTILFINPSSln 251
Cdd:MTH00010  173 YSWILLM-IIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTSFIP-- 249

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1980528990 252 lSPELFPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLwhTSMPISF 313
Cdd:MTH00010  250 -SIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPIMF 308
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 7-302 7.12e-65

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 205.90  E-value: 7.12e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   7 MSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLALLLALT 86
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  87 IWAPLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGNYTLNT 166
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 167 lattqeplYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMTTILFIN 246
Cdd:MTH00090  161 --------SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1980528990 247 PSSLNLspelfplilatktLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAF 302
Cdd:MTH00090  233 FSFLML-------------FLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIF 275
ndhA CHL00032
NADH dehydrogenase subunit 1
 9-308 3.18e-53

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 178.22  E-value: 3.18e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   9 LSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLALLLALTIW 88
Cdd:CHL00032   34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSY 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  89 apLPIPFS----LTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGnyTL 164
Cdd:CHL00032  114 --LVIPFGyhlvLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN--SL 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 165 NTLATTQEPLYLVFSTWPL------AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNM 238
Cdd:CHL00032  190 STVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSL 269

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 239 MTTILFINPSSLNLS----PELF----------PLILATKTLLLSSGFLWI----RASYPRFRYDQLMHLLWKNFLPLTL 300
Cdd:CHL00032  270 FVTVLYLGGWNLSIPyifiPELFeinktggvfgTTIGIFITLAKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPISL 349


                  ....*...
gi 1980528990 301 AFCLWHTS 308
Cdd:CHL00032  350 GNLLLTTS 357
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 2-300 2.96e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 165.87  E-value: 2.96e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   2 MNYLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVHPSTASPLLFMLTPVLAL 81
Cdd:MTH00058    1 IFGLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  82 LLALTIWAPLPIPFSLTDLNLGILFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIITLSGN 161
Cdd:MTH00058   81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 162 YTLNTLATTQEPLYLVFstWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNMMTT 241
Cdd:MTH00058  161 YSLVDFYYSGWLSVLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGS 238

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1980528990 242 ILFINPSslnlspelFPLILATKTLLLssgFLWIRASYPRFRYDQLMHLLWKNFLPLTL 300
Cdd:MTH00058  239 VLFFGGG--------FVSIMLLFHLLF---FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
2-305 2.59e-32

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 121.83  E-value: 2.59e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990   2 MNYLLMSLSYMIPILIAVAFLTLIERKILSYMQARKGPnivgpfGLLQPVADGVKLFIKEPVHPSTASPLlFMLTPVLAL 81
Cdd:COG0650     1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVAL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990  82 LLALTIWAPLPI-----PFSLTDLNLGILFLLSMSSLAvysILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSII 156
Cdd:COG0650    74 AAMLLAALLVPVlttgpPLSFSGDLIVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALA 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980528990 157 TLSGNYTLNTLATTQE---PLYLVFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 233
Cdd:COG0650   151 LLAGSTSLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKL 230

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1980528990 234 MLMNMMTTILFInPSSLNLSPELFPLILATKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCLW 305
Cdd:COG0650   231 FVLLSLFVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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