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Conserved domains on  [gi|1980524080|ref|YP_009988355|]
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ATP synthase F0 subunit 8 (mitochondrion) [Gelidiella flabella]

Protein Classification

ATP synthase subunit B family protein( domain architecture ID 10492036)

ATP synthase subunit B family protein such as subunits b and b' from the F(o) complex in F-type ATP synthase (FoF1-ATPase) found in chloroplasts and in bacterial plasma membranes; the b subunits are part of the peripheral stalk that links the F(1) and F(o) complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YMF19 pfam02326
Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant ...
 2-52 1.01e-11

Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant and algae mitochondrial F-ATPases (EC:3.6.1.34).


:

Pssm-ID: 396760  Cd Length: 84  Bit Score: 56.64  E-value: 1.01e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1980524080   2 PQLDRIIIFPQIFWLFLIFTLFYTILTHFFLPKFLRSLKARKLIAKANSEK 52
Cdd:pfam02326   1 PQLDKFTYFTQFFWLCLFFFTFYIFLLNFILPKISRILKLRKKLLSSLISS 51
 
Name Accession Description Interval E-value
YMF19 pfam02326
Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant ...
 2-52 1.01e-11

Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant and algae mitochondrial F-ATPases (EC:3.6.1.34).


Pssm-ID: 396760  Cd Length: 84  Bit Score: 56.64  E-value: 1.01e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1980524080   2 PQLDRIIIFPQIFWLFLIFTLFYTILTHFFLPKFLRSLKARKLIAKANSEK 52
Cdd:pfam02326   1 PQLDKFTYFTQFFWLCLFFFTFYIFLLNFILPKISRILKLRKKLLSSLISS 51
PRK13454 PRK13454
F0F1 ATP synthase subunit B'; Provisional
 1-64 6.48e-04

F0F1 ATP synthase subunit B'; Provisional


Pssm-ID: 184061 [Multi-domain]  Cd Length: 181  Bit Score: 37.88  E-value: 6.48e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524080   1 MPQLDrIIIFP-QIFWLFLIFTLFYTILTHFFLPKFLRSLKARK-----LIAKANSEKVSLIVKESAENK 64
Cdd:PRK13454   22 MPQLD-FSTFPnQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQgtitnDLAAAEELKQKAVEAEKAYNK 90
AtpF COG0711
FoF1-type ATP synthase, membrane subunit b or b' [Energy production and conversion]; FoF1-type ...
 11-43 4.61e-03

FoF1-type ATP synthase, membrane subunit b or b' [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit b or b' is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440475 [Multi-domain]  Cd Length: 152  Bit Score: 35.15  E-value: 4.61e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1980524080  11 PQIFWLFLIFTLFYTILTHFFLPKFLRSLKARK 43
Cdd:COG0711     1 GTLFWQLINFLILVLLLKKFAWPPILKALDERQ 33
 
Name Accession Description Interval E-value
YMF19 pfam02326
Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant ...
 2-52 1.01e-11

Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant and algae mitochondrial F-ATPases (EC:3.6.1.34).


Pssm-ID: 396760  Cd Length: 84  Bit Score: 56.64  E-value: 1.01e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1980524080   2 PQLDRIIIFPQIFWLFLIFTLFYTILTHFFLPKFLRSLKARKLIAKANSEK 52
Cdd:pfam02326   1 PQLDKFTYFTQFFWLCLFFFTFYIFLLNFILPKISRILKLRKKLLSSLISS 51
PRK13454 PRK13454
F0F1 ATP synthase subunit B'; Provisional
 1-64 6.48e-04

F0F1 ATP synthase subunit B'; Provisional


Pssm-ID: 184061 [Multi-domain]  Cd Length: 181  Bit Score: 37.88  E-value: 6.48e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1980524080   1 MPQLDrIIIFP-QIFWLFLIFTLFYTILTHFFLPKFLRSLKARK-----LIAKANSEKVSLIVKESAENK 64
Cdd:PRK13454   22 MPQLD-FSTFPnQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQgtitnDLAAAEELKQKAVEAEKAYNK 90
AtpF COG0711
FoF1-type ATP synthase, membrane subunit b or b' [Energy production and conversion]; FoF1-type ...
 11-43 4.61e-03

FoF1-type ATP synthase, membrane subunit b or b' [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit b or b' is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440475 [Multi-domain]  Cd Length: 152  Bit Score: 35.15  E-value: 4.61e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1980524080  11 PQIFWLFLIFTLFYTILTHFFLPKFLRSLKARK 43
Cdd:COG0711     1 GTLFWQLINFLILVLLLKKFAWPPILKALDERQ 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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