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Conserved domains on  [gi|1979406149]
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Chain l, 39S ribosomal protein L54, mitochondrial

Protein Classification

mL54 family ribosomal protein( domain architecture ID 7917)

mL54 family ribosomal protein

Gene Ontology:  GO:0003735|GO:0032543
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L37 super family cl07245
Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ...
 74-133 1.65e-05

Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ribosomal protein.


The actual alignment was detected with superfamily member pfam08561:

Pssm-ID: 430074  Cd Length: 88  Bit Score: 40.79  E-value: 1.65e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1979406149  74 GVNIYKEGQDVPLKPDAEYPEWLFEM-------------NLGPPKTLEELDPES--REYWRRLRKQNIWRHNRLS 133
Cdd:pfam08561  14 GLNILKNGPDPVALEDSEYPDWLWTLlddskskkqrelaAKRLRAKAEAEEPREelKKALRKARRAKIKENNFLK 88
 
Name Accession Description Interval E-value
Ribosomal_L37 pfam08561
Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ...
 74-133 1.65e-05

Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ribosomal protein.


Pssm-ID: 430074  Cd Length: 88  Bit Score: 40.79  E-value: 1.65e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1979406149  74 GVNIYKEGQDVPLKPDAEYPEWLFEM-------------NLGPPKTLEELDPES--REYWRRLRKQNIWRHNRLS 133
Cdd:pfam08561  14 GLNILKNGPDPVALEDSEYPDWLWTLlddskskkqrelaAKRLRAKAEAEEPREelKKALRKARRAKIKENNFLK 88
 
Name Accession Description Interval E-value
Ribosomal_L37 pfam08561
Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ...
 74-133 1.65e-05

Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ribosomal protein.


Pssm-ID: 430074  Cd Length: 88  Bit Score: 40.79  E-value: 1.65e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1979406149  74 GVNIYKEGQDVPLKPDAEYPEWLFEM-------------NLGPPKTLEELDPES--REYWRRLRKQNIWRHNRLS 133
Cdd:pfam08561  14 GLNILKNGPDPVALEDSEYPDWLWTLlddskskkqrelaAKRLRAKAEAEEPREelKKALRKARRAKIKENNFLK 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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