NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1975121214]
View 

Chain A, Aminoglycoside N(3)-acetyltransferase

Protein Classification

aminoglycoside N(3)-acetyltransferase( domain architecture ID 10006584)

aminoglycoside N(3)-acetyltransferase catalyzes the conversion of acetyl-CoA and a 2-deoxystreptamine antibiotic to CoA and N(3)-acetyl-2-deoxystreptamine antibiotic

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
YokD COG2746
Aminoglycoside N3'-acetyltransferase [Defense mechanisms];
21-287 1.89e-114

Aminoglycoside N3'-acetyltransferase [Defense mechanisms];


:

Pssm-ID: 442043  Cd Length: 256  Bit Score: 330.24  E-value: 1.89e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214  21 PVTRDRIRHDLAALGLVPGDTVMFHTRLSAIGYVSGGPQTVIDALLDVVGPTGTLLVTCGWNDAPpYDFTDWPP----AW 96
Cdd:COG2746     1 PVTRESLAADLRALGVRPGDTVLVHSSLSSLGWVCGGAQAVIEALLDVVGPEGTLVMPTQSGDNS-DPATWENPpvpeEW 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214  97 QEAVRAHHPAFDPRTSEAeHANGRLPEALRRRPGAVRSRHPDVSLAALGASAPALMDAHPWDDPHGPGSPLARLVALGGR 176
Cdd:COG2746    80 WETIRAEMPAFDPATTPT-RGMGAIPETFRTWPGVVRSDHPQASFAAWGPDAEEITADHPLDYGLGEGSPLARLYELDGK 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214 177 VLLLGAPRDTMTLLHHAEALAQAPGKRFVTYEQPIEVAGERVWRTFRDIDSEHgafdyssavpegqDPFAVIVGSMLAAG 256
Cdd:COG2746   159 VLLLGVGYDTNTSLHLAEYRADAPGKRTVRYGAPILEDGERVWVEFEDIDTDS-------------DDFEEIGEAFEAEG 225
                         250       260       270
                  ....*....|....*....|....*....|.
gi 1975121214 257 IGREGFVGAARSRLFDAAPAVEFGVRWIEEH 287
Cdd:COG2746   226 IVRKGKVGNADSRLFDARDLVDFAVDWLEEH 256
 
Name Accession Description Interval E-value
YokD COG2746
Aminoglycoside N3'-acetyltransferase [Defense mechanisms];
21-287 1.89e-114

Aminoglycoside N3'-acetyltransferase [Defense mechanisms];


Pssm-ID: 442043  Cd Length: 256  Bit Score: 330.24  E-value: 1.89e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214  21 PVTRDRIRHDLAALGLVPGDTVMFHTRLSAIGYVSGGPQTVIDALLDVVGPTGTLLVTCGWNDAPpYDFTDWPP----AW 96
Cdd:COG2746     1 PVTRESLAADLRALGVRPGDTVLVHSSLSSLGWVCGGAQAVIEALLDVVGPEGTLVMPTQSGDNS-DPATWENPpvpeEW 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214  97 QEAVRAHHPAFDPRTSEAeHANGRLPEALRRRPGAVRSRHPDVSLAALGASAPALMDAHPWDDPHGPGSPLARLVALGGR 176
Cdd:COG2746    80 WETIRAEMPAFDPATTPT-RGMGAIPETFRTWPGVVRSDHPQASFAAWGPDAEEITADHPLDYGLGEGSPLARLYELDGK 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214 177 VLLLGAPRDTMTLLHHAEALAQAPGKRFVTYEQPIEVAGERVWRTFRDIDSEHgafdyssavpegqDPFAVIVGSMLAAG 256
Cdd:COG2746   159 VLLLGVGYDTNTSLHLAEYRADAPGKRTVRYGAPILEDGERVWVEFEDIDTDS-------------DDFEEIGEAFEAEG 225
                         250       260       270
                  ....*....|....*....|....*....|.
gi 1975121214 257 IGREGFVGAARSRLFDAAPAVEFGVRWIEEH 287
Cdd:COG2746   226 IVRKGKVGNADSRLFDARDLVDFAVDWLEEH 256
Antibiotic_NAT pfam02522
Aminoglycoside 3-N-acetyltransferase; This family consists of bacterial aminoglycoside ...
43-285 1.52e-86

Aminoglycoside 3-N-acetyltransferase; This family consists of bacterial aminoglycoside 3-N-acetyltransferases EC:2.3.1.81, these catalyze the reaction: Acetyl-Co + a 2-deoxystreptamine antibiotic <=> CoA + N3'-acetyl-2-deoxystreptamine antibiotic. The enzyme can use a range of antibiotics with 2-deoxystreptamine rings as acceptor for its acetyltransferase activity, this inactivates and confers resistance to gentamicin, kanamycin, tobramycin, neomycin and apramycin amongst others.


Pssm-ID: 426815  Cd Length: 232  Bit Score: 258.31  E-value: 1.52e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214  43 MFHTRLSAIGYVSGGPQTVIDALLDVVGPTGTLLVTCGWN--DAPPYDFTDWPPAWQEAVRAHHPAFDPRTSEAeHANGR 120
Cdd:pfam02522   1 LVHSSLSSLGWVEGGAETVIDALLDALGPEGTLVMPTHTGdsDPAPWENPPVPEEWWDTIREEMPAFDPARTPS-RGMGI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214 121 LPEALRRRPGAVRSRHPDVSLAALGASAPALMDAHPWDDPHGPGSPLARLVALGGRVLLLGAPRDTMTLLHHAEALAQAP 200
Cdd:pfam02522  80 LAETFRTWPGVVRSAHPTHSFAAWGPDAEEITAGHPLDTPLGEGSPLGRLYDLDGKVLLLGVGFDRNTSLHLAEYRADIP 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214 201 GKRFVTYEQP-IEVAGERVWRTFRDIDSehgafdyssavpeGQDPFAVIVGSMLAAGIGREGFVGAARSRLFDAAPAVEF 279
Cdd:pfam02522 160 GRRYVRPGAPvIVPDGKRVWVHYEDVDL-------------DSEDFEKLGAAFEREGVMREGKVGNATARLFSARELVDF 226

                  ....*.
gi 1975121214 280 GVRWIE 285
Cdd:pfam02522 227 AVEWLE 232
 
Name Accession Description Interval E-value
YokD COG2746
Aminoglycoside N3'-acetyltransferase [Defense mechanisms];
21-287 1.89e-114

Aminoglycoside N3'-acetyltransferase [Defense mechanisms];


Pssm-ID: 442043  Cd Length: 256  Bit Score: 330.24  E-value: 1.89e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214  21 PVTRDRIRHDLAALGLVPGDTVMFHTRLSAIGYVSGGPQTVIDALLDVVGPTGTLLVTCGWNDAPpYDFTDWPP----AW 96
Cdd:COG2746     1 PVTRESLAADLRALGVRPGDTVLVHSSLSSLGWVCGGAQAVIEALLDVVGPEGTLVMPTQSGDNS-DPATWENPpvpeEW 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214  97 QEAVRAHHPAFDPRTSEAeHANGRLPEALRRRPGAVRSRHPDVSLAALGASAPALMDAHPWDDPHGPGSPLARLVALGGR 176
Cdd:COG2746    80 WETIRAEMPAFDPATTPT-RGMGAIPETFRTWPGVVRSDHPQASFAAWGPDAEEITADHPLDYGLGEGSPLARLYELDGK 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214 177 VLLLGAPRDTMTLLHHAEALAQAPGKRFVTYEQPIEVAGERVWRTFRDIDSEHgafdyssavpegqDPFAVIVGSMLAAG 256
Cdd:COG2746   159 VLLLGVGYDTNTSLHLAEYRADAPGKRTVRYGAPILEDGERVWVEFEDIDTDS-------------DDFEEIGEAFEAEG 225
                         250       260       270
                  ....*....|....*....|....*....|.
gi 1975121214 257 IGREGFVGAARSRLFDAAPAVEFGVRWIEEH 287
Cdd:COG2746   226 IVRKGKVGNADSRLFDARDLVDFAVDWLEEH 256
Antibiotic_NAT pfam02522
Aminoglycoside 3-N-acetyltransferase; This family consists of bacterial aminoglycoside ...
43-285 1.52e-86

Aminoglycoside 3-N-acetyltransferase; This family consists of bacterial aminoglycoside 3-N-acetyltransferases EC:2.3.1.81, these catalyze the reaction: Acetyl-Co + a 2-deoxystreptamine antibiotic <=> CoA + N3'-acetyl-2-deoxystreptamine antibiotic. The enzyme can use a range of antibiotics with 2-deoxystreptamine rings as acceptor for its acetyltransferase activity, this inactivates and confers resistance to gentamicin, kanamycin, tobramycin, neomycin and apramycin amongst others.


Pssm-ID: 426815  Cd Length: 232  Bit Score: 258.31  E-value: 1.52e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214  43 MFHTRLSAIGYVSGGPQTVIDALLDVVGPTGTLLVTCGWN--DAPPYDFTDWPPAWQEAVRAHHPAFDPRTSEAeHANGR 120
Cdd:pfam02522   1 LVHSSLSSLGWVEGGAETVIDALLDALGPEGTLVMPTHTGdsDPAPWENPPVPEEWWDTIREEMPAFDPARTPS-RGMGI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214 121 LPEALRRRPGAVRSRHPDVSLAALGASAPALMDAHPWDDPHGPGSPLARLVALGGRVLLLGAPRDTMTLLHHAEALAQAP 200
Cdd:pfam02522  80 LAETFRTWPGVVRSAHPTHSFAAWGPDAEEITAGHPLDTPLGEGSPLGRLYDLDGKVLLLGVGFDRNTSLHLAEYRADIP 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1975121214 201 GKRFVTYEQP-IEVAGERVWRTFRDIDSehgafdyssavpeGQDPFAVIVGSMLAAGIGREGFVGAARSRLFDAAPAVEF 279
Cdd:pfam02522 160 GRRYVRPGAPvIVPDGKRVWVHYEDVDL-------------DSEDFEKLGAAFEREGVMREGKVGNATARLFSARELVDF 226

                  ....*.
gi 1975121214 280 GVRWIE 285
Cdd:pfam02522 227 AVEWLE 232
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH