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Conserved domains on  [gi|197386039|ref|NP_001127983|]
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ERH, mRNA splicing and mitosis factor like 1 [Rattus norvegicus]

Protein Classification

ER domain-containing protein( domain architecture ID 10471567)

ER domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ER pfam01133
Enhancer of rudimentary; Enhancer of rudimentary is a protein of unknown function that is ...
 6-99 7.51e-57

Enhancer of rudimentary; Enhancer of rudimentary is a protein of unknown function that is highly conserved in plants and animals. This protein is found to be an enhancer of the rudimentary gene.


:

Pssm-ID: 460078  Cd Length: 98  Bit Score: 170.44  E-value: 7.51e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197386039    6 LLVQPTQRPEGRTYAEYGSVNECMEGICKMYEEHLKRLNPLSQSITYGVSQLFEFIDRMVDLSCLVFREDTQTYKPHSRE 85
Cdd:pfam01133   5 LLVQPSKNPESRTYSDYESVNQAMEGVCKIYEEHLKEKNPNLPTITYDISDLFDFIDSLADLSCLVYQKSTNTYAPHDKE 84

                          90
                  ....*....|....
gi 197386039   86 WVKERIYMLLSQQA 99
Cdd:pfam01133  85 WIKEKIYELLRKQA 98
 
Name Accession Description Interval E-value
ER pfam01133
Enhancer of rudimentary; Enhancer of rudimentary is a protein of unknown function that is ...
 6-99 7.51e-57

Enhancer of rudimentary; Enhancer of rudimentary is a protein of unknown function that is highly conserved in plants and animals. This protein is found to be an enhancer of the rudimentary gene.


Pssm-ID: 460078  Cd Length: 98  Bit Score: 170.44  E-value: 7.51e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197386039    6 LLVQPTQRPEGRTYAEYGSVNECMEGICKMYEEHLKRLNPLSQSITYGVSQLFEFIDRMVDLSCLVFREDTQTYKPHSRE 85
Cdd:pfam01133   5 LLVQPSKNPESRTYSDYESVNQAMEGVCKIYEEHLKEKNPNLPTITYDISDLFDFIDSLADLSCLVYQKSTNTYAPHDKE 84

                          90
                  ....*....|....
gi 197386039   86 WVKERIYMLLSQQA 99
Cdd:pfam01133  85 WIKEKIYELLRKQA 98
 
Name Accession Description Interval E-value
ER pfam01133
Enhancer of rudimentary; Enhancer of rudimentary is a protein of unknown function that is ...
 6-99 7.51e-57

Enhancer of rudimentary; Enhancer of rudimentary is a protein of unknown function that is highly conserved in plants and animals. This protein is found to be an enhancer of the rudimentary gene.


Pssm-ID: 460078  Cd Length: 98  Bit Score: 170.44  E-value: 7.51e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197386039    6 LLVQPTQRPEGRTYAEYGSVNECMEGICKMYEEHLKRLNPLSQSITYGVSQLFEFIDRMVDLSCLVFREDTQTYKPHSRE 85
Cdd:pfam01133   5 LLVQPSKNPESRTYSDYESVNQAMEGVCKIYEEHLKEKNPNLPTITYDISDLFDFIDSLADLSCLVYQKSTNTYAPHDKE 84

                          90
                  ....*....|....
gi 197386039   86 WVKERIYMLLSQQA 99
Cdd:pfam01133  85 WIKEKIYELLRKQA 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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