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Conserved domains on  [gi|1972631787|emb|CAE1333618|]
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unnamed protein product, partial [Prorocentrum minimum]

Protein Classification

TBCC domain-containing protein( domain architecture ID 11172638)

TBCC (Tubulin binding cofactor C) domain-containing protein such as human protein XRP2 that acts as a GTPase-activating protein (GAP) involved in trafficking between the Golgi and the ciliary membrane, and human TBCC-domain containing 1 (TBCCD1), a centrosomal protein required for centrosome and Golgi apparatus positioning

CATH:  2.160.20.70|3.30.70.141
Gene Ontology:  GO:0007023

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TBCC pfam07986
Tubulin binding cofactor C; Members of this family are involved in the folding pathway of ...
 105-223 1.23e-43

Tubulin binding cofactor C; Members of this family are involved in the folding pathway of tubulins and form a beta helix structure.


:

Pssm-ID: 462331  Cd Length: 119  Bit Score: 145.82  E-value: 1.23e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972631787 105 GVDFQVEECSGCTILICDRTDQVYLDELVDCIVLVGPCNSSIFARNCRGCTFWLACRQLRTRDCASCTFHLHSHTEPVIE 184
Cdd:pfam07986   1 GVDVKLSNLSNCTIYLLDPLSSVTIDDCKNCTIFLGPVSGSVFIRDCENCTIVVACRQLRIHDCTNCDFYLHTTSRPIIE 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1972631787 185 SSSDLSFAPFAAEYPGLSAQFKQVGFVASRNLWTAIFDF 223
Cdd:pfam07986  81 DSTGIRFAPYNTSYPGLEEHLKSAGLDPENNNWSQVDDF 119
FRQ1 super family cl34916
Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms];
18-82 7.05e-04

Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG5126:

Pssm-ID: 444056 [Multi-domain]  Cd Length: 137  Bit Score: 39.00  E-value: 7.05e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1972631787  18 DLAAVFSDADADGDGSLGLADLRGYLGDfLGYGDAEI-VAFHQAAGGESG-VTLEAFRTGIRGSLSP 82
Cdd:COG5126    70 FARAAFDLLDTDGDGKISADEFRRLLTA-LGVSEEEAdELFARLDTDGDGkISFEEFVAAVRDYYTP 135
 
Name Accession Description Interval E-value
TBCC pfam07986
Tubulin binding cofactor C; Members of this family are involved in the folding pathway of ...
 105-223 1.23e-43

Tubulin binding cofactor C; Members of this family are involved in the folding pathway of tubulins and form a beta helix structure.


Pssm-ID: 462331  Cd Length: 119  Bit Score: 145.82  E-value: 1.23e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972631787 105 GVDFQVEECSGCTILICDRTDQVYLDELVDCIVLVGPCNSSIFARNCRGCTFWLACRQLRTRDCASCTFHLHSHTEPVIE 184
Cdd:pfam07986   1 GVDVKLSNLSNCTIYLLDPLSSVTIDDCKNCTIFLGPVSGSVFIRDCENCTIVVACRQLRIHDCTNCDFYLHTTSRPIIE 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1972631787 185 SSSDLSFAPFAAEYPGLSAQFKQVGFVASRNLWTAIFDF 223
Cdd:pfam07986  81 DSTGIRFAPYNTSYPGLEEHLKSAGLDPENNNWSQVDDF 119
FRQ1 COG5126
Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms];
18-82 7.05e-04

Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms];


Pssm-ID: 444056 [Multi-domain]  Cd Length: 137  Bit Score: 39.00  E-value: 7.05e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1972631787  18 DLAAVFSDADADGDGSLGLADLRGYLGDfLGYGDAEI-VAFHQAAGGESG-VTLEAFRTGIRGSLSP 82
Cdd:COG5126    70 FARAAFDLLDTDGDGKISADEFRRLLTA-LGVSEEEAdELFARLDTDGDGkISFEEFVAAVRDYYTP 135
 
Name Accession Description Interval E-value
TBCC pfam07986
Tubulin binding cofactor C; Members of this family are involved in the folding pathway of ...
 105-223 1.23e-43

Tubulin binding cofactor C; Members of this family are involved in the folding pathway of tubulins and form a beta helix structure.


Pssm-ID: 462331  Cd Length: 119  Bit Score: 145.82  E-value: 1.23e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972631787 105 GVDFQVEECSGCTILICDRTDQVYLDELVDCIVLVGPCNSSIFARNCRGCTFWLACRQLRTRDCASCTFHLHSHTEPVIE 184
Cdd:pfam07986   1 GVDVKLSNLSNCTIYLLDPLSSVTIDDCKNCTIFLGPVSGSVFIRDCENCTIVVACRQLRIHDCTNCDFYLHTTSRPIIE 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1972631787 185 SSSDLSFAPFAAEYPGLSAQFKQVGFVASRNLWTAIFDF 223
Cdd:pfam07986  81 DSTGIRFAPYNTSYPGLEEHLKSAGLDPENNNWSQVDDF 119
FRQ1 COG5126
Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms];
18-82 7.05e-04

Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms];


Pssm-ID: 444056 [Multi-domain]  Cd Length: 137  Bit Score: 39.00  E-value: 7.05e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1972631787  18 DLAAVFSDADADGDGSLGLADLRGYLGDfLGYGDAEI-VAFHQAAGGESG-VTLEAFRTGIRGSLSP 82
Cdd:COG5126    70 FARAAFDLLDTDGDGKISADEFRRLLTA-LGVSEEEAdELFARLDTDGDGkISFEEFVAAVRDYYTP 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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