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Conserved domains on  [gi|197259885|ref|YP_002149680|]
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ATP synthase F0 subunit 6 (mitochondrion) [Madracis myriaster]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009609)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 2-225 7.40e-104

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 214447  Cd Length: 232  Bit Score: 299.65  E-value: 7.40e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   2 NSSSYFEQFNIVWLFGFTNSTIMMTFVIIVVLLLFKGIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFV 81
Cdd:MTH00172   1 MSSSYFDQFNIVWLIGLTNSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  82 FLVFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVSRAVSLG 161
Cdd:MTH00172  81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 197259885 162 IRLAANLSAGHLLFVILAGFGLVFK--------FAIFIMVFITLLEMAVAIIQAYVFCLLTVVYLTDTIILH 225
Cdd:MTH00172 161 VRLAANLSAGHLLFAILAGFGFNMLcasgflslFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTIVLH 232
 
Name Accession Description Interval E-value
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 2-225 7.40e-104

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 299.65  E-value: 7.40e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   2 NSSSYFEQFNIVWLFGFTNSTIMMTFVIIVVLLLFKGIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFV 81
Cdd:MTH00172   1 MSSSYFDQFNIVWLIGLTNSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  82 FLVFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVSRAVSLG 161
Cdd:MTH00172  81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 197259885 162 IRLAANLSAGHLLFVILAGFGLVFK--------FAIFIMVFITLLEMAVAIIQAYVFCLLTVVYLTDTIILH 225
Cdd:MTH00172 161 VRLAANLSAGHLLFAILAGFGFNMLcasgflslFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTIVLH 232
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 7-222 6.77e-49

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 159.68  E-value: 6.77e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885    7 FEQFNI--VWLFGFTNSTIMMTFVIIVVLLLFK-GIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFVFL 83
Cdd:TIGR01131   2 FSQFDIspITLFSLTLLSLILLLSLLIFLISSSlSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   84 VFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVSRAVSLGIR 163
Cdd:TIGR01131  82 LISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVR 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 197259885  164 LAANLSAGHLLFVILAGF------GLVFKFAIFIMVFITLLEMAVAIIQAYVFCLLTVVYLTDTI 222
Cdd:TIGR01131 162 LFANISAGHLLLTLLSGLlfslmsSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 69-218 4.77e-38

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 129.44  E-value: 4.77e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  69 GLRYFSFIVSLFVFLVFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILI 148
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 197259885 149 ETVSYVSRAVSLGIRLAANLSAGHLLFVILAGFGLVFK-----FAIFIMVFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLssvglLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 21-218 7.05e-36

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 125.57  E-value: 7.05e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  21 STIMMTFVIIVVLLLFKGIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFVFLVFLNILGLCPYVFTPTT 100
Cdd:COG0356    6 SWLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885 101 HIIVTLGFSFSIVIGVTFSGFYK--FKKDFFSILMPSGAPlvLAPLLILIETVSYVSRAVSLGIRLAANLSAGHLLFVIL 178
Cdd:COG0356   86 DINVTLALALIVFVLVHYYGIKKkgLGGYLKHLFFPPFPW--LAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLL 163

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 197259885 179 AGFGLVFK---FAIFIMVFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:COG0356  164 AGLAPFLLlgvLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYI 206
ATP-synt_A pfam00119
ATP synthase A chain;
22-218 1.38e-33

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 119.90  E-value: 1.38e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   22 TIMMTFVIIVVLLLF-----KGIELIPKRWQSVYECIENYFYYITMQNLGG-VGLRYFSFIVSLFVFLVFLNILGL---C 92
Cdd:pfam00119   1 LLMSLIVALILLLFLllatrKTKKLVPGRLQNFVEMLVEFVDNIVKDNIGKkKGRKFFPLLLTLFFFILVSNLLGLipkS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   93 PYVFTPTTHIIVTLGFSFSIVIGVTFSGFYK--FKKDFFSILMPSgAPLVLAPLLILIETVSYVSRAVSLGIRLAANLSA 170
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKhgLGGYFKKLFVPP-VPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLA 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 197259885  171 GHLLFVILAGFGLVFK--------FAIFIMVFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:pfam00119 160 GHLLLLLLAGLIFALLsagfllgvIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYI 215
 
Name Accession Description Interval E-value
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 2-225 7.40e-104

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 299.65  E-value: 7.40e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   2 NSSSYFEQFNIVWLFGFTNSTIMMTFVIIVVLLLFKGIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFV 81
Cdd:MTH00172   1 MSSSYFDQFNIVWLIGLTNSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  82 FLVFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVSRAVSLG 161
Cdd:MTH00172  81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 197259885 162 IRLAANLSAGHLLFVILAGFGLVFK--------FAIFIMVFITLLEMAVAIIQAYVFCLLTVVYLTDTIILH 225
Cdd:MTH00172 161 VRLAANLSAGHLLFAILAGFGFNMLcasgflslFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTIVLH 232
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 4-225 1.02e-84

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 251.46  E-value: 1.02e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   4 SSYFEQFNIV-----------WLFGFTNSTIMMTFVIIVVLLLFKGIELIPKRWQSVYECIENYFYYITMQNLGGVGLRY 72
Cdd:MTH00175   3 AAYFDQFNIIrlitiqaflgdWLVTFTNSSMMMVLAVIIFWLLLKGDKLIPNRWQSIMELIYLNIRSVVHDNLGKSGQKY 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  73 FSFIVSLFVFLVFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVS 152
Cdd:MTH00175  83 FPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885 153 YVSRAVSLGIRLAANLSAGHLLFVILAGF-------GLVFK--FAIFIMVFITLLEMAVAIIQAYVFCLLTVVYLTDTII 223
Cdd:MTH00175 163 YLIRAISLGVRLAANISAGHLLFAILSGFafnmlsnGLIILslFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGDTIA 242


                 ..
gi 197259885 224 LH 225
Cdd:MTH00175 243 LH 244
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 7-222 6.77e-49

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 159.68  E-value: 6.77e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885    7 FEQFNI--VWLFGFTNSTIMMTFVIIVVLLLFK-GIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFVFL 83
Cdd:TIGR01131   2 FSQFDIspITLFSLTLLSLILLLSLLIFLISSSlSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   84 VFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVSRAVSLGIR 163
Cdd:TIGR01131  82 LISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVR 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 197259885  164 LAANLSAGHLLFVILAGF------GLVFKFAIFIMVFITLLEMAVAIIQAYVFCLLTVVYLTDTI 222
Cdd:TIGR01131 162 LFANISAGHLLLTLLSGLlfslmsSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 4-225 6.74e-45

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 150.09  E-value: 6.74e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   4 SSYFEQFNIVWLFG----------------FTNSTIMMTFVIIVVLLLFK---GIELIPKRWQSVYECIENYFYYITMQN 64
Cdd:MTH00174   3 AAYFDQFNIIPIFSiwvyflsfwingeffcFTNTFFMMSFAVFLFYTIGAkgnNNTLVPNRILVGLELIYSHFYTVLKDN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  65 LGGVGLRYFSFIVSLFVFLVFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPL 144
Cdd:MTH00174  83 LGNKGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885 145 LILIETVSYVSRAVSLGIRLAANLSAGHLLFVILAGFG--------LVFKFAIF-IMVFITLLEMAVAIIQAYVFCLLTV 215
Cdd:MTH00174 163 LTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAwkmintgiLIGSFVPFaILIFVTILEMAVAIIQAYVFTLLTI 242

                        250
                 ....*....|
gi 197259885 216 VYLTDTIILH 225
Cdd:MTH00174 243 VYLRDTVELH 252
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 69-218 4.77e-38

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 129.44  E-value: 4.77e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  69 GLRYFSFIVSLFVFLVFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILI 148
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 197259885 149 ETVSYVSRAVSLGIRLAANLSAGHLLFVILAGFGLVFK-----FAIFIMVFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLssvglLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 16-221 2.57e-36

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 127.21  E-value: 2.57e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  16 FGFTNSTIMMTFVIIVVLLLFKgieLIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFVFLVFLNILGLCPYV 95
Cdd:MTH00157  15 FNLSLNWLSTFLGLLFIPSSFW---LIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFILFNNFLGLFPYI 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  96 FTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVSRAVSLGIRLAANLSAGHLLF 175
Cdd:MTH00157  92 FTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVRLAANMIAGHLLL 171

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 197259885 176 VILAGFGLVFKFAIFIMVFIT-----LLEMAVAIIQAYVFCLLTVVYLTDT 221
Cdd:MTH00157 172 TLLGNTGPSLSSMILSILILIqilllILESAVAIIQSYVFSVLSTLYSSEV 222
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 21-218 7.05e-36

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 125.57  E-value: 7.05e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  21 STIMMTFVIIVVLLLFKGIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFVFLVFLNILGLCPYVFTPTT 100
Cdd:COG0356    6 SWLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885 101 HIIVTLGFSFSIVIGVTFSGFYK--FKKDFFSILMPSGAPlvLAPLLILIETVSYVSRAVSLGIRLAANLSAGHLLFVIL 178
Cdd:COG0356   86 DINVTLALALIVFVLVHYYGIKKkgLGGYLKHLFFPPFPW--LAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLL 163

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 197259885 179 AGFGLVFK---FAIFIMVFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:COG0356  164 AGLAPFLLlgvLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYI 206
ATP-synt_A pfam00119
ATP synthase A chain;
22-218 1.38e-33

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 119.90  E-value: 1.38e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   22 TIMMTFVIIVVLLLF-----KGIELIPKRWQSVYECIENYFYYITMQNLGG-VGLRYFSFIVSLFVFLVFLNILGL---C 92
Cdd:pfam00119   1 LLMSLIVALILLLFLllatrKTKKLVPGRLQNFVEMLVEFVDNIVKDNIGKkKGRKFFPLLLTLFFFILVSNLLGLipkS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   93 PYVFTPTTHIIVTLGFSFSIVIGVTFSGFYK--FKKDFFSILMPSgAPLVLAPLLILIETVSYVSRAVSLGIRLAANLSA 170
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKhgLGGYFKKLFVPP-VPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLA 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 197259885  171 GHLLFVILAGFGLVFK--------FAIFIMVFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:pfam00119 160 GHLLLLLLAGLIFALLsagfllgvIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYI 215
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 5-218 6.45e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 118.51  E-value: 6.45e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   5 SYFEQFNIVWLFGFTNSTIMMTFVIIVVLLLFKGieLIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFVFLV 84
Cdd:MTH00179   4 SMFDQFESPSLLGIPLLALALLLPWLLFPSLTNR--WLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFLL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  85 FLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVSRAVSLGIRL 164
Cdd:MTH00179  82 TLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVRL 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 197259885 165 AANLSAGHLL--------FVILAGFGLVFKFAIFIMVFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:MTH00179 162 TANITAGHLLmhlissavFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYL 223
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 13-225 3.04e-30

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 111.42  E-value: 3.04e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  13 VWLFGFTNSTIMMTFVIIVVLLLF----KGIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFVFLVFLNI 88
Cdd:PRK05815   9 FGGFNFDSLLLSVLLGVLILLLFAlvatRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGKGKKFAPLAFTLFLFILLMNL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  89 LGLCP-YVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFK-KDFFSILMPSgaplvLAPLLILIETVSYVSRAVSLGIRLAA 166
Cdd:PRK05815  89 LGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKKGlGGYLKEFYLQ-----PHPLLLPIEIISEFSRPISLSLRLFG 163

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 197259885 167 NLSAGHLLFVILAGFG----LVFKFAIFIMVFITLLEMAVAIIQAYVFCLLTVVYLTDTIILH 225
Cdd:PRK05815 164 NMLAGELILALIALLGgaglLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISMAVEEE 226
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 76-218 4.08e-30

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 111.12  E-value: 4.08e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  76 IVSLFVFLVFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVS 155
Cdd:MTH00132  73 LTSLMLFLITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFI 152

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 197259885 156 RAVSLGIRLAANLSAGHLL--------FVILAGFGLVFKFAIFIMVFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:MTH00132 153 RPLALGVRLTANLTAGHLLiqliataaFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYL 223
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 5-218 1.83e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 109.53  E-value: 1.83e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   5 SYFEQFNIVWLFGFtnSTIMMTFVIIVVLLLFKGIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFVFLV 84
Cdd:MTH00120   4 NFFDQFSSPELLGI--PLILLAMLIPALLIPSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLLL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  85 FLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVSRAVSLGIRL 164
Cdd:MTH00120  82 LINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVRL 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 197259885 165 AANLSAGHLL--------FVILAGFGLVFKFAIFIMVFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:MTH00120 162 TANLTAGHLLiqlistatLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYL 223
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 7-220 3.39e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 108.97  E-value: 3.39e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   7 FEQFNIVWLFGFTNSTIMMTFVIIVVLLLFKGIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFVFLVFL 86
Cdd:MTH00176   6 FSSFDPPNKNIFSMISLSWITLLLFLLLMPSSVWFCPSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFILVMSL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  87 NILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVSRAVSLGIRLAA 166
Cdd:MTH00176  86 NLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLAVRLAA 165

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 197259885 167 NLSAGHLLFVILAGFG--------LVFKFAIFIMVFITLLEMAVAIIQAYVFCLLTVVYLTD 220
Cdd:MTH00176 166 NLSAGHLLLGLLGAAMwgllpvspLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDE 227
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 15-220 6.47e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 108.28  E-value: 6.47e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  15 LFGFTNSTIMMTFVIIVVLLLFKGIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFVFLVFLNILGLCPY 94
Cdd:MTH00005  16 LFNNLSSTAFWAFNFSIILLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMNLSGLLPY 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  95 VFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVSRAVSLGIRLAANLSAGHLL 174
Cdd:MTH00005  96 VFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIV 175

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 197259885 175 FVIL------AGFGLVFKFA--IFIMVFITLLEMAVAIIQAYVFCLLTVVYLTD 220
Cdd:MTH00005 176 LSLIgiyaasALFSSISSTIllILTQMGYILFEVGICLIQAYIFCLLLSLYSDD 229
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 76-218 5.13e-28

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 105.82  E-value: 5.13e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  76 IVSLFVFLVFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVS 155
Cdd:MTH00073  73 LTSLMVFLITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFI 152

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 197259885 156 RAVSLGIRLAANLSAGHLL--------FVILAGFGLVFKFAIFIMVFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:MTH00073 153 RPLALGVRLTANLTAGHLLiqlistatLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYL 223
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 62-217 3.08e-27

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 103.79  E-value: 3.08e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  62 MQNLGGVGLryfsFIVSLFVFLVFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVL 141
Cdd:MTH00173  65 GLNLGGFSL----LLSSLFLFLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGL 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885 142 APLLILIETVSYVSRAVSLGIRLAANLSAGHLLFVILAGFGLVFKF---------AIFIMVFITLLEMAVAIIQAYVFCL 212
Cdd:MTH00173 141 NPFLVLIETVSILIRPLTLTVRLLANISAGHIVLTLIGNYLSSSLFsssvvslllVLLIQVGYFIFEVAVMLIQAYIFTL 220


                 ....*
gi 197259885 213 LTVVY 217
Cdd:MTH00173 221 LIKLY 225
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 76-220 1.65e-26

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 101.95  E-value: 1.65e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  76 IVSLFVFLVFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVS 155
Cdd:MTH00101  72 LMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFI 151

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 197259885 156 RAVSLGIRLAANLSAGHLLFVILAGFGLVF-------KFAIFIMVFI-TLLEMAVAIIQAYVFCLLTVVYLTD 220
Cdd:MTH00101 152 QPMALAVRLTANITAGHLLIHLIGGATLALmsistttALITFIILILlTILEFAVALIQAYVFTLLVSLYLHD 224
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 4-222 4.19e-26

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 100.82  E-value: 4.19e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885   4 SSYFEQFNIVWLFGFTNSTIMMTFVIIVVLLLFKgIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFVFL 83
Cdd:MTH00035   5 NSIFGQFSPDTILFIPLTLLSSVIALSWLFFINP-TNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFILI 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  84 VFLNILGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVSRAVSLGIR 163
Cdd:MTH00035  84 LSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGLR 163

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 197259885 164 LAANLSAGHLLFV-------ILAGFGLVFKFAIFIMVFITLLEMAVAIIQAYVFCLLTVVYLTDTI 222
Cdd:MTH00035 164 LAANLTAGHLLIFllstaiwELSNSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQNI 229
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 19-218 1.74e-15

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 74.01  E-value: 1.74e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  19 TNSTIMMTFVIIVVLLLFKGIELIPKRWQS------VYECIENYFYYITM----QNLGGVGLRYFSFIVSLFVFLVFLNI 88
Cdd:PRK13419 107 TKHVVMMWIASAILLVVFLAAGRKYKKMTKsqapkgLANAMEALVEFIRLdvakSNIGHGYEKFLPYLLTVFFFILVCNL 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  89 LGLCPYVFTPTTHIIVTLGFS-FSIVIgVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIETVSYVSRAVSLGIRLAAN 167
Cdd:PRK13419 187 LGLVPYGATATGNINVTLTLAvFTFFI-TQYAAIKAHGIKGYLAHLTGGTHWSLWIIMIPIEFIGLFTKPFALTVRLFAN 265

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885 168 LSAGHllFVILAGFGLVFKFAIFIM---------VFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:PRK13419 266 MTAGH--IVILSLIFISFILKSYIVavavsvpfaIFIYLLELFVAFLQAYIFTMLSALFI 323
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 60-218 6.51e-11

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 61.06  E-value: 6.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  60 ITMQNLGGVGLRYFSFIVSLFVFLVFLNILGLCPYV-----------------------------------FTPTTHIIV 104
Cdd:PRK13417 145 IVDESMHGHGHSYYHYIFTLFFFILFCNLMGLVPSVgeltvvasdygglvalgvmdhtphalptfakvwsgITVTGDISV 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885 105 TLGFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPLLILIE-TVSYVSRAVSLGIRLAANLSAGHLLFVILAGFGL 183
Cdd:PRK13417 225 TMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEfIVSPMAKTFALTVRLLANMTAGHVIILALMGFIF 304

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 197259885 184 VFK------FAIFIMVFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:PRK13417 305 QFQswgivpVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLFV 345
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 24-218 1.97e-08

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 52.78  E-value: 1.97e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  24 MMTFVIIVVLLLFKGIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFVFLVFLNILGLCPYVFTPTTHI- 102
Cdd:PRK13421  29 IMAVLAAGSALATRRLSLAPGRLQSVLELVVTTIDAQIRDTMQTDPAPYRALIGTLFLFVLVANWSSLVPGVEPPTAHLe 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885 103 ----IVTLGFSFSIVIGVTFSGFYKFKKDFFSilmPSgaplvlaPLLILIETVSYVSRAVSLGIRLAANLSAGhlLFVIl 178
Cdd:PRK13421 109 tdaaLALIVFLATIYYGVRARGVRGYLATFAE---PT-------WVMIPLNLVEQLTRTFSLIVRLFGNVMSG--VFVI- 175

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 197259885 179 agfGLVFKFA-IFIMVFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:PRK13421 176 ---GIVLSLAgLLVPIPLMALDLLTGAVQAYIFAVLAMVFI 213
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 73-218 2.86e-08

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 51.90  E-value: 2.86e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  73 FSFIVSLFVFLVFLNILGLCPYVFTPTTHIIVTlgFSFSIVIGVTFSGFYKFKKDFFSILMPSGAPLVLAPL-LILIETV 151
Cdd:MTH00087  52 SVISFFTFIVLLLFCFGGLFPYSFSPCGMVEFT--FLYALVAWLSTFLSFLSKSEKFSVYLSKGSDSFLKTFsMLFVEIV 129

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 197259885 152 SYVSRAVSLGIRLAANLSAGHLLFVILAGFGLVFkfaIFIMVFITLLEMAVAIIQAYVFCLLTVVYL 218
Cdd:MTH00087 130 SELSRPLALTLRLTVNLMVGHLISSLLNFLGEKY---VWLSILAIMMECFVAFIQSYIFSRLIYLYL 193
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 55-211 4.61e-08

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 51.04  E-value: 4.61e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  55 NYFYYITMQNLGGVGLRYFSFIVSLFVFLVFLniLGLCPYVFTPTTHIIVTLGFSFSIVIGVTFSGFYKFKKDFFSILMP 134
Cdd:MTH00050   7 SSLFSLIYKLILGGSVSYYYSVVLFIVLFLFL--LYRLPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVP 84

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 197259885 135 SGAPLVLAPLLILIETVSYVSRAVSLGIRLAANLSAGHLLFVILAGFGLVFKFAIFIMVFITLLEMAVAIIQAYVFC 211
Cdd:MTH00050  85 VGTPLYICPFVCIAETISYIIRPVVLILRPFINISLGCFGGVALGNLCFISYWWFLVLFFLFFYEVFVALVHWFIVS 161
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 23-222 7.00e-08

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 51.28  E-value: 7.00e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885  23 IMMTFVIIVVLLLFKgIELIPKRWQSVYECIENYFYYITMQNLGGVGLRYFSFIVSLFVFLVFLNILGLCPYVFTPTTHI 102
Cdd:PRK13420  26 IMIVLVLASWLTTRR-LSLDPGRFQVALEGVVSTIEDAIKEVLPRHARLVLPFVGTLWIFILVANLIGLIPGFHSPTADL 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197259885 103 IVTLGFSFSIVI-----GVTFSGFYKFKKDFFSilmPSgaplvlaPLLILIETVSYVSRAVSLGIRLAANLSA---GHLL 174
Cdd:PRK13420 105 SVTAALALLVFFsvhwfGIRAEGLREYLKHYLS---PS-------PFLLPFHLISEITRTLALAVRLFGNIMSlelAALL 174

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 197259885 175 FVILAGFglvfkfaiFIMVFITLLEMAVAIIQAYVFCLLTVVYLTDTI 222
Cdd:PRK13420 175 VLLVAGF--------LVPVPILMLHIIEALVQAYIFGMLALIYIAGGI 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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