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Conserved domains on  [gi|1970430256|gb|QRC63214|]
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hypothetical protein JL628_00335 (plasmid) [Klebsiella pneumoniae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LPD7 pfam18821
Large polyvalent protein-associated domain 7; This domain contains conserved aspartate and ...
 72-167 3.27e-13

Large polyvalent protein-associated domain 7; This domain contains conserved aspartate and phenylalanine residues. It is widely present in polyvalent proteins and gene neighbourhoods of conjugative elements. This domain is also known as PTox1.


:

Pssm-ID: 465879 [Multi-domain]  Cd Length: 92  Bit Score: 65.35  E-value: 3.27e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1970430256  72 ARFGYRAEKDYTAYTLDGQDAFYDYGSHLRMAtpeASQSDEMILAAVLTAdKQHHRGIEITGSDEFKERVFNLISEYNIE 151
Cdd:pfam18821   1 DALTDRYTKDGTVYYRDGRPAFRDRGDRLTVT---SSDDPEAIRAALRLA-QAKWGSIRVTGSEEFKRRAWRAAAERGLE 76

                          90
                  ....*....|....*.
gi 1970430256 152 VKLTNPEQRVKLLELK 167
Cdd:pfam18821  77 VTFEDPDLEALRQALR 92
 
Name Accession Description Interval E-value
LPD7 pfam18821
Large polyvalent protein-associated domain 7; This domain contains conserved aspartate and ...
 72-167 3.27e-13

Large polyvalent protein-associated domain 7; This domain contains conserved aspartate and phenylalanine residues. It is widely present in polyvalent proteins and gene neighbourhoods of conjugative elements. This domain is also known as PTox1.


Pssm-ID: 465879 [Multi-domain]  Cd Length: 92  Bit Score: 65.35  E-value: 3.27e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1970430256  72 ARFGYRAEKDYTAYTLDGQDAFYDYGSHLRMAtpeASQSDEMILAAVLTAdKQHHRGIEITGSDEFKERVFNLISEYNIE 151
Cdd:pfam18821   1 DALTDRYTKDGTVYYRDGRPAFRDRGDRLTVT---SSDDPEAIRAALRLA-QAKWGSIRVTGSEEFKRRAWRAAAERGLE 76

                          90
                  ....*....|....*.
gi 1970430256 152 VKLTNPEQRVKLLELK 167
Cdd:pfam18821  77 VTFEDPDLEALRQALR 92
 
Name Accession Description Interval E-value
LPD7 pfam18821
Large polyvalent protein-associated domain 7; This domain contains conserved aspartate and ...
 72-167 3.27e-13

Large polyvalent protein-associated domain 7; This domain contains conserved aspartate and phenylalanine residues. It is widely present in polyvalent proteins and gene neighbourhoods of conjugative elements. This domain is also known as PTox1.


Pssm-ID: 465879 [Multi-domain]  Cd Length: 92  Bit Score: 65.35  E-value: 3.27e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1970430256  72 ARFGYRAEKDYTAYTLDGQDAFYDYGSHLRMAtpeASQSDEMILAAVLTAdKQHHRGIEITGSDEFKERVFNLISEYNIE 151
Cdd:pfam18821   1 DALTDRYTKDGTVYYRDGRPAFRDRGDRLTVT---SSDDPEAIRAALRLA-QAKWGSIRVTGSEEFKRRAWRAAAERGLE 76

                          90
                  ....*....|....*.
gi 1970430256 152 VKLTNPEQRVKLLELK 167
Cdd:pfam18821  77 VTFEDPDLEALRQALR 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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