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Conserved domains on  [gi|1962030453|emb|CAE0467569|]
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unnamed protein product, partial [Chaetoceros debilis]

Protein Classification

photosystem I reaction center subunit VIII( domain architecture ID 10000150)

photosystem I reaction center subunit VIII may help in the organization of the PsaL subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psaI CHL00186
photosystem I subunit VIII; Validated
 125-159 9.31e-13

photosystem I subunit VIII; Validated


:

Pssm-ID: 177088  Cd Length: 36  Bit Score: 59.22  E-value: 9.31e-13
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1962030453 125 MAASFLPAIFVPVVGLVFPAFSMALFFLYTQKDDI 159
Cdd:CHL00186    1 MTASNLPSILVPLVGLVFPAIAMASLFLYIQKDKI 35
 
Name Accession Description Interval E-value
psaI CHL00186
photosystem I subunit VIII; Validated
 125-159 9.31e-13

photosystem I subunit VIII; Validated


Pssm-ID: 177088  Cd Length: 36  Bit Score: 59.22  E-value: 9.31e-13
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1962030453 125 MAASFLPAIFVPVVGLVFPAFSMALFFLYTQKDDI 159
Cdd:CHL00186    1 MTASNLPSILVPLVGLVFPAIAMASLFLYIQKDKI 35
PsaI COG5707
Photosystem I reaction center subunit VIII, PsaI [Energy production and conversion]; ...
 124-158 3.26e-08

Photosystem I reaction center subunit VIII, PsaI [Energy production and conversion]; Photosystem I reaction center subunit VIII, PsaI is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444417  Cd Length: 38  Bit Score: 47.28  E-value: 3.26e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1962030453 124 EMAASFLPAIFVPVVGLVFPAFSMALFFLYTQKDD 158
Cdd:COG5707     4 SYAASFLPWIFVPLVGWVLPAVVMGLLFIYIESEA 38
PS_I_psaI TIGR03052
photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit ...
 128-158 3.41e-08

photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. [Energy metabolism, Photosynthesis]


Pssm-ID: 132096  Cd Length: 31  Bit Score: 46.95  E-value: 3.41e-08
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1962030453 128 SFLPAIFVPVVGLVFPAFSMALFFLYTQKDD 158
Cdd:TIGR03052   1 AWLPSIFVPLVGLVFPAVFMALLFRYIEADD 31
PSI_8 pfam00796
Photosystem I reaction centre subunit VIII;
131-153 2.53e-06

Photosystem I reaction centre subunit VIII;


Pssm-ID: 425874  Cd Length: 24  Bit Score: 42.15  E-value: 2.53e-06
                          10        20
                  ....*....|....*....|...
gi 1962030453 131 PAIFVPVVGLVFPAFSMALFFLY 153
Cdd:pfam00796   1 PSIFVPLVGLVFPAVAMALLFLY 23
 
Name Accession Description Interval E-value
psaI CHL00186
photosystem I subunit VIII; Validated
 125-159 9.31e-13

photosystem I subunit VIII; Validated


Pssm-ID: 177088  Cd Length: 36  Bit Score: 59.22  E-value: 9.31e-13
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1962030453 125 MAASFLPAIFVPVVGLVFPAFSMALFFLYTQKDDI 159
Cdd:CHL00186    1 MTASNLPSILVPLVGLVFPAIAMASLFLYIQKDKI 35
PsaI COG5707
Photosystem I reaction center subunit VIII, PsaI [Energy production and conversion]; ...
 124-158 3.26e-08

Photosystem I reaction center subunit VIII, PsaI [Energy production and conversion]; Photosystem I reaction center subunit VIII, PsaI is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444417  Cd Length: 38  Bit Score: 47.28  E-value: 3.26e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1962030453 124 EMAASFLPAIFVPVVGLVFPAFSMALFFLYTQKDD 158
Cdd:COG5707     4 SYAASFLPWIFVPLVGWVLPAVVMGLLFIYIESEA 38
PS_I_psaI TIGR03052
photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit ...
 128-158 3.41e-08

photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. [Energy metabolism, Photosynthesis]


Pssm-ID: 132096  Cd Length: 31  Bit Score: 46.95  E-value: 3.41e-08
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1962030453 128 SFLPAIFVPVVGLVFPAFSMALFFLYTQKDD 158
Cdd:TIGR03052   1 AWLPSIFVPLVGLVFPAVFMALLFRYIEADD 31
psaI PRK11877
photosystem I reaction center subunit VIII; Reviewed
 124-158 1.63e-07

photosystem I reaction center subunit VIII; Reviewed


Pssm-ID: 183355  Cd Length: 38  Bit Score: 45.44  E-value: 1.63e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1962030453 124 EMAASFLPAIFVPVVGLVFPAFSMALFFLYTQKDD 158
Cdd:PRK11877    4 DFAASWLPWIFVPLVGWVFPAVFMVLLGRYITATA 38
PSI_8 pfam00796
Photosystem I reaction centre subunit VIII;
131-153 2.53e-06

Photosystem I reaction centre subunit VIII;


Pssm-ID: 425874  Cd Length: 24  Bit Score: 42.15  E-value: 2.53e-06
                          10        20
                  ....*....|....*....|...
gi 1962030453 131 PAIFVPVVGLVFPAFSMALFFLY 153
Cdd:pfam00796   1 PSIFVPLVGLVFPAVAMALLFLY 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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