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Conserved domains on  [gi|1959488157|gb|QQX10083|]
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proteasome 26S subunit, partial [Kinixys belliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK03992 super family cl32052
proteasome-activating nucleotidase; Provisional
 1-15 1.81e-04

proteasome-activating nucleotidase; Provisional


The actual alignment was detected with superfamily member PRK03992:

Pssm-ID: 179699 [Multi-domain]  Cd Length: 389  Bit Score: 34.42  E-value: 1.81e-04
                          10
                  ....*....|....*
gi 1959488157   1 YADIGGLDNQIQEIK 15
Cdd:PRK03992  130 YEDIGGLEEQIREVR 144
 
Name Accession Description Interval E-value
PRK03992 PRK03992
proteasome-activating nucleotidase; Provisional
 1-15 1.81e-04

proteasome-activating nucleotidase; Provisional


Pssm-ID: 179699 [Multi-domain]  Cd Length: 389  Bit Score: 34.42  E-value: 1.81e-04
                          10
                  ....*....|....*
gi 1959488157   1 YADIGGLDNQIQEIK 15
Cdd:PRK03992  130 YEDIGGLEEQIREVR 144
RecA-like_PAN_like cd19502
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ...
 1-15 7.92e-04

proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410910 [Multi-domain]  Cd Length: 171  Bit Score: 32.31  E-value: 7.92e-04
                          10
                  ....*....|....*
gi 1959488157   1 YADIGGLDNQIQEIK 15
Cdd:cd19502     2 YEDIGGLDEQIREIR 16
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 1-15 9.11e-03

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 29.59  E-value: 9.11e-03
                          10
                  ....*....|....*
gi 1959488157   1 YADIGGLDNQIQEIK 15
Cdd:COG1222    77 FDDIGGLDEQIEEIR 91
 
Name Accession Description Interval E-value
PRK03992 PRK03992
proteasome-activating nucleotidase; Provisional
 1-15 1.81e-04

proteasome-activating nucleotidase; Provisional


Pssm-ID: 179699 [Multi-domain]  Cd Length: 389  Bit Score: 34.42  E-value: 1.81e-04
                          10
                  ....*....|....*
gi 1959488157   1 YADIGGLDNQIQEIK 15
Cdd:PRK03992  130 YEDIGGLEEQIREVR 144
PTZ00361 PTZ00361
26 proteosome regulatory subunit 4-like protein; Provisional
 1-15 1.89e-04

26 proteosome regulatory subunit 4-like protein; Provisional


Pssm-ID: 185575 [Multi-domain]  Cd Length: 438  Bit Score: 34.36  E-value: 1.89e-04
                          10
                  ....*....|....*
gi 1959488157   1 YADIGGLDNQIQEIK 15
Cdd:PTZ00361  182 YADIGGLEQQIQEIK 196
RecA-like_PAN_like cd19502
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ...
 1-15 7.92e-04

proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410910 [Multi-domain]  Cd Length: 171  Bit Score: 32.31  E-value: 7.92e-04
                          10
                  ....*....|....*
gi 1959488157   1 YADIGGLDNQIQEIK 15
Cdd:cd19502     2 YEDIGGLDEQIREIR 16
PTZ00454 PTZ00454
26S protease regulatory subunit 6B-like protein; Provisional
 1-15 5.48e-03

26S protease regulatory subunit 6B-like protein; Provisional


Pssm-ID: 240423 [Multi-domain]  Cd Length: 398  Bit Score: 30.12  E-value: 5.48e-03
                          10
                  ....*....|....*
gi 1959488157   1 YADIGGLDNQIQEIK 15
Cdd:PTZ00454  144 YSDIGGLDIQKQEIR 158
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 1-15 9.11e-03

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 29.59  E-value: 9.11e-03
                          10
                  ....*....|....*
gi 1959488157   1 YADIGGLDNQIQEIK 15
Cdd:COG1222    77 FDDIGGLDEQIEEIR 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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