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Conserved domains on  [gi|1959383682|gb|QQW47488|]
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Ycf2 protein [Sinocrassula densirosulata]

Protein Classification

Ycf2( domain architecture ID 11414145)

Ycf2 is a DUF825 and AAA (ATPases Associated with various cellular Activities) domain-containing protein of unknown function

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2280 0e+00

Ycf2; Provisional


:

Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4132.64  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682    1 MKEHQFKSWIFELREIWREIKNSHSFLDSWTQFNSVGSFIHIFFHQERFLKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682   81 VLFVVAVLIYRINNRNMVERKNIYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  161 WVLPISKKCIMPESNWGWRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLGFLFVYSMDDPIRKDHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKKPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQYH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVQNVSSNIQYDSTRSSFVQVTNSSQLKGSSDQS 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  401 RDHFDSISNEDSEYHTLINQREIHQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480
Cdd:CHL00206   401 RDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  481 DEVLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEkeQDPSFVPSRRSENKEMVNIFKIITYLQNTVSIHLIS 560
Cdd:CHL00206   481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQ--QDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPIS 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  561 SDPGCDMVPKDEPDMDSSNKISVLNKNPFFDLFHLFHDRNRGGYALRHDFESEERFQEKADLFTLSITEPDLVYHKGFAF 640
Cdd:CHL00206   559 SDPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 638

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  641 SIDSYGLDQNQFLNE---ARDESKKKSLLVLPPIFYEENESFYRRMRKKWVRISCGNDLEDPKPKRVVFASNNIMEAFNQ 717
Cdd:CHL00206   639 SIDSYGLDQKQFLNEvfnSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPKPKIVVFASNNIMEAVNQ 718

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  718 SRLIRNLIQIQYSTYGYIRNVLNPFFLMNRSDRNFEYGIQRDQIGNDTLNHRTLMKYTINQHLSNLKKSQKKWFDPLIWI 797
Cdd:CHL00206   719 YRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  798 SRTERSKNRDPNADRYKGSNGSKNFQEH---FGSEQKSHFQVVFDRLLRNQYSIDWSEVIDKKDL--------------- 859
Cdd:CHL00206   799 SRTERSMNRDPDAYRYKWSNGSKNFQEHlehFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLskslrfflsklllfl 878

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  860 SKLLLFLSNSLPFFFVSFGNIPVHRSEIHIYELKGPNYQLCNQLLESIGLQIVHLKKWKPFLLDDHDTSQKSKFLINGGT 939
Cdd:CHL00206   879 SKKLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGT 958

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  940 ISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSHFSMISHDQDNWLNPVKPFHGSSLISSFYKANRLRFLNNPHHFCFYCN 1019
Cdd:CHL00206   959 ISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYCN 1038

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1020 KRFPFYVEKAGINNYDFTYGQFLNILFIRNKIFDLCGGKKKHAFLERDTISPIESQVSNIFIPKDFPQSGDETYNLYKYF 1099
Cdd:CHL00206  1039 KRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSF 1118

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1100 HFPIRSDPFVRRAFYSIADISGTPLTEGEIVHFERTYCQPLSDLNLSDSEGKNLHQYLNFNSNMSLIHTPCSEKDLPSEN 1179
Cdd:CHL00206  1119 HFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEK 1198

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1180 RKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQPYMPWFLTSAGYKYLNFLFLDTFSDLLSILSNSQKCVSIFHDI 1259
Cdd:CHL00206  1199 RKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSSQKFVSIFHDI 1278

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1260 MYGSDISWRILQKK--GCLPQWNLISEISRKCLHNFLMFEEMIHRNNESPLISTHLRLPNVHEFLYSILFLLLVVGYLVR 1337
Cdd:CHL00206  1279 MHGSDISWRILQKKlgLKLPQWNLISEISSKCLHNLLLSEEMIHRESESPLIWTHLRSPNVREFLYSILFLLLVAGYLVR 1358

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1338 THLLFVSRASSELQTEFEKVKSLMIPPYMIELRKILDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSvsGGNMLLGG 1417
Cdd:CHL00206  1359 THLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGS--GGNMLLGG 1436

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1418 GdPAYGVKSIRSKKKYLNINLIDLISIIPNPTNRITFSRNTRHLSHTSKEIYSLIRKRKNVNSDWIDDKMESWVANSDSI 1497
Cdd:CHL00206  1437 G-PAYGVKSIRSKKKYLNINLIDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVANSDSI 1515

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1498 DDEEREFLVQFSTLTTEKGIDQILLSLTHSDylssdHLSKNDSGYQMIEHPGAIYLGYLVDIHQKCLMNYEFNTSCLAER 1577
Cdd:CHL00206  1516 DDEEREFLVQFSTLTTEKRIDQILLSLTHSD-----HLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAER 1590

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1578 RIFLAHYQTITYSQTSCGANSFHFPSHEKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPL--VFLNKFLDNK 1655
Cdd:CHL00206  1591 RIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFitVFLNKFLDNK 1670

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1656 PKGFLIDDIDIDDSDniddsdniddsdEIDASDDMDLDLDTELELLtlMNALTMDMMPEIDRFSITLQFELAKAMSPCII 1735
Cdd:CHL00206  1671 PKGFLIDDIDIDDSD------------DIDDSDDIDRDLDTELLTM--MNALTMDMMPKIDRFYITLQFELAKAMSPCII 1736

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1736 WIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALIVPNKLNTCIKIRRLLIPQQRKHFFNL 1815
Cdd:CHL00206  1737 WIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTL 1816

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1816 SYTKGFHLEKKMFHTNEFGSITMGSNARDLVALTNEALAISITQKKSIIDTNTMRSALHRQTWDLRSRVRSVQDHEILFY 1895
Cdd:CHL00206  1817 SYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFY 1896

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1896 QIGRAVAQNVLLSNCPIDPISIYMKKKSCNERDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGI 1975
Cdd:CHL00206  1897 QIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGI 1976

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1976 TSYGLVENASDLVHGLLEVEGALGGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYQKYESEFEEG 2055
Cdd:CHL00206  1977 TSYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEG 2056

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 2056 EVEGALDPQQIEEDLFNHIVWAPRIWRPWGFLFYCIERPNELGFPYWARSFRGKRIIYDEENELQENDSEFLQSGTMQYQ 2135
Cdd:CHL00206  2057 ESEGALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQ 2136

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 2136 TRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPPVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFEL 2215
Cdd:CHL00206  2137 TRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFEL 2216

                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1959383682 2216 LIHHQRWIRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGRLLDQMTKTLLRKRWLFPDEMKIGFM 2280
Cdd:CHL00206  2217 LIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2280 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4132.64  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682    1 MKEHQFKSWIFELREIWREIKNSHSFLDSWTQFNSVGSFIHIFFHQERFLKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682   81 VLFVVAVLIYRINNRNMVERKNIYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  161 WVLPISKKCIMPESNWGWRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLGFLFVYSMDDPIRKDHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKKPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQYH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVQNVSSNIQYDSTRSSFVQVTNSSQLKGSSDQS 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  401 RDHFDSISNEDSEYHTLINQREIHQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480
Cdd:CHL00206   401 RDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  481 DEVLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEkeQDPSFVPSRRSENKEMVNIFKIITYLQNTVSIHLIS 560
Cdd:CHL00206   481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQ--QDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPIS 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  561 SDPGCDMVPKDEPDMDSSNKISVLNKNPFFDLFHLFHDRNRGGYALRHDFESEERFQEKADLFTLSITEPDLVYHKGFAF 640
Cdd:CHL00206   559 SDPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 638

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  641 SIDSYGLDQNQFLNE---ARDESKKKSLLVLPPIFYEENESFYRRMRKKWVRISCGNDLEDPKPKRVVFASNNIMEAFNQ 717
Cdd:CHL00206   639 SIDSYGLDQKQFLNEvfnSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPKPKIVVFASNNIMEAVNQ 718

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  718 SRLIRNLIQIQYSTYGYIRNVLNPFFLMNRSDRNFEYGIQRDQIGNDTLNHRTLMKYTINQHLSNLKKSQKKWFDPLIWI 797
Cdd:CHL00206   719 YRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  798 SRTERSKNRDPNADRYKGSNGSKNFQEH---FGSEQKSHFQVVFDRLLRNQYSIDWSEVIDKKDL--------------- 859
Cdd:CHL00206   799 SRTERSMNRDPDAYRYKWSNGSKNFQEHlehFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLskslrfflsklllfl 878

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  860 SKLLLFLSNSLPFFFVSFGNIPVHRSEIHIYELKGPNYQLCNQLLESIGLQIVHLKKWKPFLLDDHDTSQKSKFLINGGT 939
Cdd:CHL00206   879 SKKLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGT 958

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  940 ISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSHFSMISHDQDNWLNPVKPFHGSSLISSFYKANRLRFLNNPHHFCFYCN 1019
Cdd:CHL00206   959 ISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYCN 1038

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1020 KRFPFYVEKAGINNYDFTYGQFLNILFIRNKIFDLCGGKKKHAFLERDTISPIESQVSNIFIPKDFPQSGDETYNLYKYF 1099
Cdd:CHL00206  1039 KRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSF 1118

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1100 HFPIRSDPFVRRAFYSIADISGTPLTEGEIVHFERTYCQPLSDLNLSDSEGKNLHQYLNFNSNMSLIHTPCSEKDLPSEN 1179
Cdd:CHL00206  1119 HFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEK 1198

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1180 RKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQPYMPWFLTSAGYKYLNFLFLDTFSDLLSILSNSQKCVSIFHDI 1259
Cdd:CHL00206  1199 RKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSSQKFVSIFHDI 1278

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1260 MYGSDISWRILQKK--GCLPQWNLISEISRKCLHNFLMFEEMIHRNNESPLISTHLRLPNVHEFLYSILFLLLVVGYLVR 1337
Cdd:CHL00206  1279 MHGSDISWRILQKKlgLKLPQWNLISEISSKCLHNLLLSEEMIHRESESPLIWTHLRSPNVREFLYSILFLLLVAGYLVR 1358

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1338 THLLFVSRASSELQTEFEKVKSLMIPPYMIELRKILDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSvsGGNMLLGG 1417
Cdd:CHL00206  1359 THLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGS--GGNMLLGG 1436

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1418 GdPAYGVKSIRSKKKYLNINLIDLISIIPNPTNRITFSRNTRHLSHTSKEIYSLIRKRKNVNSDWIDDKMESWVANSDSI 1497
Cdd:CHL00206  1437 G-PAYGVKSIRSKKKYLNINLIDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVANSDSI 1515

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1498 DDEEREFLVQFSTLTTEKGIDQILLSLTHSDylssdHLSKNDSGYQMIEHPGAIYLGYLVDIHQKCLMNYEFNTSCLAER 1577
Cdd:CHL00206  1516 DDEEREFLVQFSTLTTEKRIDQILLSLTHSD-----HLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAER 1590

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1578 RIFLAHYQTITYSQTSCGANSFHFPSHEKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPL--VFLNKFLDNK 1655
Cdd:CHL00206  1591 RIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFitVFLNKFLDNK 1670

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1656 PKGFLIDDIDIDDSDniddsdniddsdEIDASDDMDLDLDTELELLtlMNALTMDMMPEIDRFSITLQFELAKAMSPCII 1735
Cdd:CHL00206  1671 PKGFLIDDIDIDDSD------------DIDDSDDIDRDLDTELLTM--MNALTMDMMPKIDRFYITLQFELAKAMSPCII 1736

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1736 WIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALIVPNKLNTCIKIRRLLIPQQRKHFFNL 1815
Cdd:CHL00206  1737 WIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTL 1816

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1816 SYTKGFHLEKKMFHTNEFGSITMGSNARDLVALTNEALAISITQKKSIIDTNTMRSALHRQTWDLRSRVRSVQDHEILFY 1895
Cdd:CHL00206  1817 SYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFY 1896

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1896 QIGRAVAQNVLLSNCPIDPISIYMKKKSCNERDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGI 1975
Cdd:CHL00206  1897 QIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGI 1976

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1976 TSYGLVENASDLVHGLLEVEGALGGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYQKYESEFEEG 2055
Cdd:CHL00206  1977 TSYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEG 2056

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 2056 EVEGALDPQQIEEDLFNHIVWAPRIWRPWGFLFYCIERPNELGFPYWARSFRGKRIIYDEENELQENDSEFLQSGTMQYQ 2135
Cdd:CHL00206  2057 ESEGALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQ 2136

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 2136 TRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPPVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFEL 2215
Cdd:CHL00206  2137 TRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFEL 2216

                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1959383682 2216 LIHHQRWIRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGRLLDQMTKTLLRKRWLFPDEMKIGFM 2280
Cdd:CHL00206  2217 LIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 1-1465 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2816.94  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682    1 MKEHQFKSWIFELREIWREIKNSHSFLDSWTQFNSVGSFIHIFFHQERFLKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80
Cdd:pfam05695    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682   81 VLFVVAVLIYRINNRNMVERKNIYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  161 WVLPISKKCIMPESNWGWRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLGFLFVYSMDDPIRKDHDWELFDRLS 240
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKKPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQYH 320
Cdd:pfam05695  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVQNVSSNIQYDSTRSSFVQVTNSSQLKGSSDQS 400
Cdd:pfam05695  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  401 RDHFDSISNEDSEYHTLINQREIHQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480
Cdd:pfam05695  401 RDHFDSISNEDSKYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  481 DEVLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEkeQDPSFVPSRRSENKEMVNIFKIITYLQNTVSIHLIS 560
Cdd:pfam05695  481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQ--QDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHPIS 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  561 SDPGCDMVPKDEPDMDSSNKISVLNKNPFFDLFHLFHDRNRGGYALRHDFESEERFQEKADLFTLSITEPDLVYHKGFAF 640
Cdd:pfam05695  559 SDPGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 638

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  641 SIDSYGLDQNQFLNE---ARDESKKKSLLVLPPIFYEENESFYRRMRKKWVRISCGNDLEDPKPKRVVFASNNIMEAFNQ 717
Cdd:pfam05695  639 SIDSYGLDQKHFLNEvfnSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDPKPKIVVFASNNIMEAVNQ 718

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  718 SRLIRNLIQIQYSTYGYIRNVLNPFFLMNRSDRNFEYGIQRDQIGNDTLNHRTLMKYTINQHLSNLKKSQKKWFDPLIWI 797
Cdd:pfam05695  719 YRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  798 SRTERSKNRDPNADRYKGSNGSKNFQEH---FGSEQKSHFQVVFDRLLRNQYSIDWSEVIDKKDLSK------------- 861
Cdd:pfam05695  799 SRTERSMNRDPNAYRYKWSNGSKNFQEHlehFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKslrfflsksllfl 878

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  862 --LLLFLSNSLPFFFVSFGNIPVHRSEIHIYELKGPNYQLCNQLLESIGLQIVHLKKWKPFLLDDHDTSQKSKFLINGGT 939
Cdd:pfam05695  879 skFLLFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQKSKFLINGGT 958

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  940 ISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSHFSMISHDQDNWLNPVKPFHGSSLISSFYKANRLRFLNNPHHFCFYCN 1019
Cdd:pfam05695  959 ISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYCN 1038

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1020 KRFPFYVEKAGINNYDFTYGQFLNILFIRNKIFDLCGGKKKHAFLERDTISPIESQVSNIFIPKDFPQSGDETYNLYKYF 1099
Cdd:pfam05695 1039 KRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSF 1118

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1100 HFPIRSDPFVRRAFYSIADISGTPLTEGEIVHFERTYCQPLSDLNLSDSEGKNLHQYLNFNSNMSLIHTPCSEKDLPSEN 1179
Cdd:pfam05695 1119 HFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEK 1198

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1180 RKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQPYMPWFLTSAGYKYLNFLFLDTFSDLLSILSNSQKCVSIFHDI 1259
Cdd:pfam05695 1199 RKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDI 1278

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1260 MYGSDISWRILQKKGCLPQWNLISEISRKCLHNFLMFEEMIHRNNESPLISTHLRLPNVHEFLYSILFLLLVVGYLVRTH 1339
Cdd:pfam05695 1279 MHGSDILWRIRQKKLCLPQWNLISEISSKCLHNLLLSEEMIHRNNESPLISTHLRSPNVREFFYSILFLLLVAGYLVRTH 1358

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1340 LLFVSRASSELQTEFEKVKSLMIPPYMIELRKILDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSVSGGNMLLGGGd 1419
Cdd:pfam05695 1359 LLFVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSASGGNMLLGGG- 1437

                         1450      1460      1470      1480
                   ....*....|....*....|....*....|....*....|....*....
gi 1959383682 1420 PAYGVKSIRSKKKYLNINL---IDLISIIPNPTNRITFSRNTRHLSHTS 1465
Cdd:pfam05695 1438 PAYGVKSIRSKKKYLNINLidiIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1606-1800 6.28e-75

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 246.13  E-value: 6.28e-75
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1606 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPL--VFLNKFLDNKPKGFLiddididdsdniddsdniddsde 1683
Cdd:cd19505      1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLirISLNKLLYNKPDFGN----------------------- 57

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1684 IDASDDMdldldtelelltlmnaltmdMMPEIDRFSITLQFELAKAMSPCIIWIPNIHDLDVN-------ESNYLSLGLL 1756
Cdd:cd19505     58 DDWIDGM--------------------LILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLL 117

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1959383682 1757 VNYLSRDCERCSTRNILVIASTHIPQKVDPALIVPNKLNTCIKI 1800
Cdd:cd19505    118 LNYLSRDFEKSSTRNILVIASTHIPQKVDPALIAPNRLDTCINI 161
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 1724-1875 2.53e-06

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 51.93  E-value: 2.53e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1724 FELAKAMSPCIIWIPNI--------HDLDVNESNYLslgllVNYL--------SRDcercstrNILVIASTHIPQKVDPA 1787
Cdd:COG1222    164 FELAREKAPSIIFIDEIdaiaarrtDDGTSGEVQRT-----VNQLlaeldgfeSRG-------DVLIIAATNRPDLLDPA 231

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1788 LIVPNKLNtcikiRRLLIP----QQRKHFFNLsYTKGFHLEKKMFhTNEFGSITMGSNARDLVALTNEALAISITQKKSI 1863
Cdd:COG1222    232 LLRPGRFD-----RVIEVPlpdeEAREEILKI-HLRDMPLADDVD-LDKLAKLTEGFSGADLKAIVTEAGMFAIREGRDT 304

                          170
                   ....*....|..
gi 1959383682 1864 IDTNTMRSALHR 1875
Cdd:COG1222    305 VTMEDLEKAIEK 316
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2280 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4132.64  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682    1 MKEHQFKSWIFELREIWREIKNSHSFLDSWTQFNSVGSFIHIFFHQERFLKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80
Cdd:CHL00206     1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682   81 VLFVVAVLIYRINNRNMVERKNIYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160
Cdd:CHL00206    81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  161 WVLPISKKCIMPESNWGWRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLGFLFVYSMDDPIRKDHDWELFDRLS 240
Cdd:CHL00206   161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKKPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQYH 320
Cdd:CHL00206   241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVQNVSSNIQYDSTRSSFVQVTNSSQLKGSSDQS 400
Cdd:CHL00206   321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  401 RDHFDSISNEDSEYHTLINQREIHQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480
Cdd:CHL00206   401 RDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  481 DEVLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEkeQDPSFVPSRRSENKEMVNIFKIITYLQNTVSIHLIS 560
Cdd:CHL00206   481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQ--QDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHPIS 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  561 SDPGCDMVPKDEPDMDSSNKISVLNKNPFFDLFHLFHDRNRGGYALRHDFESEERFQEKADLFTLSITEPDLVYHKGFAF 640
Cdd:CHL00206   559 SDPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 638

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  641 SIDSYGLDQNQFLNE---ARDESKKKSLLVLPPIFYEENESFYRRMRKKWVRISCGNDLEDPKPKRVVFASNNIMEAFNQ 717
Cdd:CHL00206   639 SIDSYGLDQKQFLNEvfnSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPKPKIVVFASNNIMEAVNQ 718

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  718 SRLIRNLIQIQYSTYGYIRNVLNPFFLMNRSDRNFEYGIQRDQIGNDTLNHRTLMKYTINQHLSNLKKSQKKWFDPLIWI 797
Cdd:CHL00206   719 YRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  798 SRTERSKNRDPNADRYKGSNGSKNFQEH---FGSEQKSHFQVVFDRLLRNQYSIDWSEVIDKKDL--------------- 859
Cdd:CHL00206   799 SRTERSMNRDPDAYRYKWSNGSKNFQEHlehFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLskslrfflsklllfl 878

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  860 SKLLLFLSNSLPFFFVSFGNIPVHRSEIHIYELKGPNYQLCNQLLESIGLQIVHLKKWKPFLLDDHDTSQKSKFLINGGT 939
Cdd:CHL00206   879 SKKLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLINGGT 958

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  940 ISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSHFSMISHDQDNWLNPVKPFHGSSLISSFYKANRLRFLNNPHHFCFYCN 1019
Cdd:CHL00206   959 ISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYCN 1038

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1020 KRFPFYVEKAGINNYDFTYGQFLNILFIRNKIFDLCGGKKKHAFLERDTISPIESQVSNIFIPKDFPQSGDETYNLYKYF 1099
Cdd:CHL00206  1039 KRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSF 1118

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1100 HFPIRSDPFVRRAFYSIADISGTPLTEGEIVHFERTYCQPLSDLNLSDSEGKNLHQYLNFNSNMSLIHTPCSEKDLPSEN 1179
Cdd:CHL00206  1119 HFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEK 1198

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1180 RKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQPYMPWFLTSAGYKYLNFLFLDTFSDLLSILSNSQKCVSIFHDI 1259
Cdd:CHL00206  1199 RKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSSQKFVSIFHDI 1278

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1260 MYGSDISWRILQKK--GCLPQWNLISEISRKCLHNFLMFEEMIHRNNESPLISTHLRLPNVHEFLYSILFLLLVVGYLVR 1337
Cdd:CHL00206  1279 MHGSDISWRILQKKlgLKLPQWNLISEISSKCLHNLLLSEEMIHRESESPLIWTHLRSPNVREFLYSILFLLLVAGYLVR 1358

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1338 THLLFVSRASSELQTEFEKVKSLMIPPYMIELRKILDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSvsGGNMLLGG 1417
Cdd:CHL00206  1359 THLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGS--GGNMLLGG 1436

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1418 GdPAYGVKSIRSKKKYLNINLIDLISIIPNPTNRITFSRNTRHLSHTSKEIYSLIRKRKNVNSDWIDDKMESWVANSDSI 1497
Cdd:CHL00206  1437 G-PAYGVKSIRSKKKYLNINLIDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIESWVANSDSI 1515

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1498 DDEEREFLVQFSTLTTEKGIDQILLSLTHSDylssdHLSKNDSGYQMIEHPGAIYLGYLVDIHQKCLMNYEFNTSCLAER 1577
Cdd:CHL00206  1516 DDEEREFLVQFSTLTTEKRIDQILLSLTHSD-----HLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAER 1590

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1578 RIFLAHYQTITYSQTSCGANSFHFPSHEKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPL--VFLNKFLDNK 1655
Cdd:CHL00206  1591 RIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFitVFLNKFLDNK 1670

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1656 PKGFLIDDIDIDDSDniddsdniddsdEIDASDDMDLDLDTELELLtlMNALTMDMMPEIDRFSITLQFELAKAMSPCII 1735
Cdd:CHL00206  1671 PKGFLIDDIDIDDSD------------DIDDSDDIDRDLDTELLTM--MNALTMDMMPKIDRFYITLQFELAKAMSPCII 1736

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1736 WIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALIVPNKLNTCIKIRRLLIPQQRKHFFNL 1815
Cdd:CHL00206  1737 WIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTL 1816

                         1850      1860      1870      1880      1890      1900      1910      1920
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1816 SYTKGFHLEKKMFHTNEFGSITMGSNARDLVALTNEALAISITQKKSIIDTNTMRSALHRQTWDLRSRVRSVQDHEILFY 1895
Cdd:CHL00206  1817 SYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFY 1896

                         1930      1940      1950      1960      1970      1980      1990      2000
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1896 QIGRAVAQNVLLSNCPIDPISIYMKKKSCNERDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGI 1975
Cdd:CHL00206  1897 QIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGI 1976

                         2010      2020      2030      2040      2050      2060      2070      2080
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1976 TSYGLVENASDLVHGLLEVEGALGGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMIQNGSCSIVDQRFLYQKYESEFEEG 2055
Cdd:CHL00206  1977 TSYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYESEFEEG 2056

                         2090      2100      2110      2120      2130      2140      2150      2160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 2056 EVEGALDPQQIEEDLFNHIVWAPRIWRPWGFLFYCIERPNELGFPYWARSFRGKRIIYDEENELQENDSEFLQSGTMQYQ 2135
Cdd:CHL00206  2057 ESEGALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQ 2136

                         2170      2180      2190      2200      2210      2220      2230      2240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 2136 TRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPPVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFEL 2215
Cdd:CHL00206  2137 TRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFEL 2216

                         2250      2260      2270      2280      2290      2300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1959383682 2216 LIHHQRWIRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGRLLDQMTKTLLRKRWLFPDEMKIGFM 2280
Cdd:CHL00206  2217 LIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMKIGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 1-1465 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2816.94  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682    1 MKEHQFKSWIFELREIWREIKNSHSFLDSWTQFNSVGSFIHIFFHQERFLKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80
Cdd:pfam05695    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682   81 VLFVVAVLIYRINNRNMVERKNIYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  161 WVLPISKKCIMPESNWGWRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLGFLFVYSMDDPIRKDHDWELFDRLS 240
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMDDPIRKDHDWELFDRLS 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKKPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQYH 320
Cdd:pfam05695  241 PRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFH 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVQNVSSNIQYDSTRSSFVQVTNSSQLKGSSDQS 400
Cdd:pfam05695  321 MWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGSSDQS 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  401 RDHFDSISNEDSEYHTLINQREIHQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480
Cdd:pfam05695  401 RDHFDSISNEDSKYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLLPEEI 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  481 DEVLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKEkeQDPSFVPSRRSENKEMVNIFKIITYLQNTVSIHLIS 560
Cdd:pfam05695  481 EEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQ--QDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHPIS 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  561 SDPGCDMVPKDEPDMDSSNKISVLNKNPFFDLFHLFHDRNRGGYALRHDFESEERFQEKADLFTLSITEPDLVYHKGFAF 640
Cdd:pfam05695  559 SDPGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGFAF 638

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  641 SIDSYGLDQNQFLNE---ARDESKKKSLLVLPPIFYEENESFYRRMRKKWVRISCGNDLEDPKPKRVVFASNNIMEAFNQ 717
Cdd:pfam05695  639 SIDSYGLDQKHFLNEvfnSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDPKPKIVVFASNNIMEAVNQ 718

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  718 SRLIRNLIQIQYSTYGYIRNVLNPFFLMNRSDRNFEYGIQRDQIGNDTLNHRTLMKYTINQHLSNLKKSQKKWFDPLIWI 797
Cdd:pfam05695  719 YRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFI 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  798 SRTERSKNRDPNADRYKGSNGSKNFQEH---FGSEQKSHFQVVFDRLLRNQYSIDWSEVIDKKDLSK------------- 861
Cdd:pfam05695  799 SRTERSMNRDPNAYRYKWSNGSKNFQEHlehFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKslrfflsksllfl 878

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  862 --LLLFLSNSLPFFFVSFGNIPVHRSEIHIYELKGPNYQLCNQLLESIGLQIVHLKKWKPFLLDDHDTSQKSKFLINGGT 939
Cdd:pfam05695  879 skFLLFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQKSKFLINGGT 958

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682  940 ISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSHFSMISHDQDNWLNPVKPFHGSSLISSFYKANRLRFLNNPHHFCFYCN 1019
Cdd:pfam05695  959 ISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYCN 1038

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1020 KRFPFYVEKAGINNYDFTYGQFLNILFIRNKIFDLCGGKKKHAFLERDTISPIESQVSNIFIPKDFPQSGDETYNLYKYF 1099
Cdd:pfam05695 1039 KRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDETYNLYKSF 1118

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1100 HFPIRSDPFVRRAFYSIADISGTPLTEGEIVHFERTYCQPLSDLNLSDSEGKNLHQYLNFNSNMSLIHTPCSEKDLPSEN 1179
Cdd:pfam05695 1119 HFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEK 1198

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1180 RKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQPYMPWFLTSAGYKYLNFLFLDTFSDLLSILSNSQKCVSIFHDI 1259
Cdd:pfam05695 1199 RKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDI 1278

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1260 MYGSDISWRILQKKGCLPQWNLISEISRKCLHNFLMFEEMIHRNNESPLISTHLRLPNVHEFLYSILFLLLVVGYLVRTH 1339
Cdd:pfam05695 1279 MHGSDILWRIRQKKLCLPQWNLISEISSKCLHNLLLSEEMIHRNNESPLISTHLRSPNVREFFYSILFLLLVAGYLVRTH 1358

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1340 LLFVSRASSELQTEFEKVKSLMIPPYMIELRKILDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSVSGGNMLLGGGd 1419
Cdd:pfam05695 1359 LLFVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSASGGNMLLGGG- 1437

                         1450      1460      1470      1480
                   ....*....|....*....|....*....|....*....|....*....
gi 1959383682 1420 PAYGVKSIRSKKKYLNINL---IDLISIIPNPTNRITFSRNTRHLSHTS 1465
Cdd:pfam05695 1438 PAYGVKSIRSKKKYLNINLidiIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1606-1800 6.28e-75

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 246.13  E-value: 6.28e-75
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1606 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPL--VFLNKFLDNKPKGFLiddididdsdniddsdniddsde 1683
Cdd:cd19505      1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLirISLNKLLYNKPDFGN----------------------- 57

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1684 IDASDDMdldldtelelltlmnaltmdMMPEIDRFSITLQFELAKAMSPCIIWIPNIHDLDVN-------ESNYLSLGLL 1756
Cdd:cd19505     58 DDWIDGM--------------------LILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLGLL 117

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1959383682 1757 VNYLSRDCERCSTRNILVIASTHIPQKVDPALIVPNKLNTCIKI 1800
Cdd:cd19505    118 LNYLSRDFEKSSTRNILVIASTHIPQKVDPALIAPNRLDTCINI 161
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 1601-1800 3.71e-07

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 51.90  E-value: 3.71e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1601 FPSHEKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPLVflnkfldnkpkgfliddididdsdniddsdnidd 1680
Cdd:cd19481     10 EAPRRGSRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLI---------------------------------- 55

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1681 sdEIDASDDMDLDLDTelelltlmnalTMDMMPEIdrfsitlqFELAKAMSPCIIWIPNIHDL-----DVNESNYLSLgl 1755
Cdd:cd19481     56 --VVKLSSLLSKYVGE-----------SEKNLRKI--------FERARRLAPCILFIDEIDAIgrkrdSSGESGELRR-- 112

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1959383682 1756 LVNYLSRDCERCSTRN-ILVIASTHIPQKVDPALIVPNKLNTCIKI 1800
Cdd:cd19481    113 VLNQLLTELDGVNSRSkVLVIAATNRPDLLDPALLRPGRFDEVIEF 158
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 1724-1875 2.53e-06

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 51.93  E-value: 2.53e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1724 FELAKAMSPCIIWIPNI--------HDLDVNESNYLslgllVNYL--------SRDcercstrNILVIASTHIPQKVDPA 1787
Cdd:COG1222    164 FELAREKAPSIIFIDEIdaiaarrtDDGTSGEVQRT-----VNQLlaeldgfeSRG-------DVLIIAATNRPDLLDPA 231

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1788 LIVPNKLNtcikiRRLLIP----QQRKHFFNLsYTKGFHLEKKMFhTNEFGSITMGSNARDLVALTNEALAISITQKKSI 1863
Cdd:COG1222    232 LLRPGRFD-----RVIEVPlpdeEAREEILKI-HLRDMPLADDVD-LDKLAKLTEGFSGADLKAIVTEAGMFAIREGRDT 304

                          170
                   ....*....|..
gi 1959383682 1864 IDTNTMRSALHR 1875
Cdd:COG1222    305 VTMEDLEKAIEK 316
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 1724-1789 7.34e-06

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 47.59  E-value: 7.34e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959383682 1724 FELAKAMSPCIIWIPNIHDL--DVNESNYLSLGLLVNYL--SRDCERCSTRNILVIASTHIPQKVDPALI 1789
Cdd:pfam00004   50 FEAAKKLAPCVIFIDEIDALagSRGSGGDSESRRVVNQLltELDGFTSSNSKVIVIAATNRPDKLDPALL 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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