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Conserved domains on  [gi|1957820017|ref|WP_201196991|]
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VCBS domain-containing protein, partial [Pseudomonas fluorescens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VCBS_repeat super family cl11690
VCBS repeat; This domain of about 100 residues is found multiple (up to 35) copies in long ...
 86-141 6.47e-03

VCBS repeat; This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.


The actual alignment was detected with superfamily member TIGR01965:

Pssm-ID: 273899 [Multi-domain]  Cd Length: 99  Bit Score: 34.24  E-value: 6.47e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1957820017  86 HGNYGQILLNPDGTYTYTLTSpAGTTPQADNGTNTVTETFTYQATDWIGNKVTSTI 141
Cdd:TIGR01965  23 AGQYGTFSIDADGQWTYQADN-SQTAVQALKAGETLTDTFTVTSADGTSQTVTITI 77
 
Name Accession Description Interval E-value
VCBS_repeat TIGR01965
VCBS repeat; This domain of about 100 residues is found multiple (up to 35) copies in long ...
 86-141 6.47e-03

VCBS repeat; This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.


Pssm-ID: 273899 [Multi-domain]  Cd Length: 99  Bit Score: 34.24  E-value: 6.47e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1957820017  86 HGNYGQILLNPDGTYTYTLTSpAGTTPQADNGTNTVTETFTYQATDWIGNKVTSTI 141
Cdd:TIGR01965  23 AGQYGTFSIDADGQWTYQADN-SQTAVQALKAGETLTDTFTVTSADGTSQTVTITI 77
 
Name Accession Description Interval E-value
VCBS_repeat TIGR01965
VCBS repeat; This domain of about 100 residues is found multiple (up to 35) copies in long ...
 86-141 6.47e-03

VCBS repeat; This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.


Pssm-ID: 273899 [Multi-domain]  Cd Length: 99  Bit Score: 34.24  E-value: 6.47e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1957820017  86 HGNYGQILLNPDGTYTYTLTSpAGTTPQADNGTNTVTETFTYQATDWIGNKVTSTI 141
Cdd:TIGR01965  23 AGQYGTFSIDADGQWTYQADN-SQTAVQALKAGETLTDTFTVTSADGTSQTVTITI 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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