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Conserved domains on  [gi|1955868975|ref|XP_038892391|]
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putative pentatricopeptide repeat-containing protein At1g13630 isoform X1 [Benincasa hispida]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 253-696 9.89e-31

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 130.38  E-value: 9.89e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  253 QSKLQDAISFLQDSNEvdgPSIVSINTIMSKLCKVGLIDVARSFLSLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFT 332
Cdd:PLN03218   419 QRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  333 DDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLKGLNPDLVTYTILM--CGhcqmgnieealklrqetlsrgf 410
Cdd:PLN03218   496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIsaCG---------------------- 553

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  411 klniisysvllsclcKVGQIEEALTLLDEM--ETLCLKPDFIVYSILIHGLCKQGLVQRAYQLYEQMCLKRI--FPNYFA 486
Cdd:PLN03218   554 ---------------QSGAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIkgTPEVYT 618

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  487 qrAVLLGLFKNGNISEARKYFDALTHMDLIEDVILYNIMIDGYVRLGDITEAMQLYYRMIERRITPSIVTFNTLVNGFCR 566
Cdd:PLN03218   619 --IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  567 RGDLMEARKMMEVIRLNGLLPSVVTYTTLMNAYCEVGNMQEMFDLLHEMEANSVVPTHVTYTVLIKGLCRQNKMHESLQL 646
Cdd:PLN03218   697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 1955868975  647 LEYMYAKGLMPDPVTYNTIIQcFCKgRDIAKAFQLYNKMLLHNLDPTQVT 696
Cdd:PLN03218   777 LSQAKEDGIKPNLVMCRCITG-LCL-RRFEKACALGEPVVSFDSGRPQIE 824
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 377-426 5.98e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.84  E-value: 5.98e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1955868975 377 PDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCK 426
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 692-740 7.38e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 49.28  E-value: 7.38e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1955868975 692 PTQVTYNVLINGLCMYGDLKDVDRMLVSMEDRNISLTKVAYMTLIKAHC 740
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 730-776 3.21e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.36  E-value: 3.21e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1955868975 730 VAYMTLIKAHCAKGEVSKALGFFNQMLAKSFVISIRDYSAIINRLCK 776
Cdd:pfam13041   4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 207-251 2.68e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 39.27  E-value: 2.68e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1955868975 207 SVPTYNSLLHNL---RHTDIMWDIYNEIKVSGAPHGEYTTSILIHGLC 251
Cdd:pfam13041   2 DVVTYNTLINGYckkGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 767-799 1.55e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


:

Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 1.55e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1955868975 767 YSAIINRLCKRGLITEAKHFFVMMLSEGETPDS 799
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 253-696 9.89e-31

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 130.38  E-value: 9.89e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  253 QSKLQDAISFLQDSNEvdgPSIVSINTIMSKLCKVGLIDVARSFLSLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFT 332
Cdd:PLN03218   419 QRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  333 DDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLKGLNPDLVTYTILM--CGhcqmgnieealklrqetlsrgf 410
Cdd:PLN03218   496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIsaCG---------------------- 553

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  411 klniisysvllsclcKVGQIEEALTLLDEM--ETLCLKPDFIVYSILIHGLCKQGLVQRAYQLYEQMCLKRI--FPNYFA 486
Cdd:PLN03218   554 ---------------QSGAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIkgTPEVYT 618

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  487 qrAVLLGLFKNGNISEARKYFDALTHMDLIEDVILYNIMIDGYVRLGDITEAMQLYYRMIERRITPSIVTFNTLVNGFCR 566
Cdd:PLN03218   619 --IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  567 RGDLMEARKMMEVIRLNGLLPSVVTYTTLMNAYCEVGNMQEMFDLLHEMEANSVVPTHVTYTVLIKGLCRQNKMHESLQL 646
Cdd:PLN03218   697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 1955868975  647 LEYMYAKGLMPDPVTYNTIIQcFCKgRDIAKAFQLYNKMLLHNLDPTQVT 696
Cdd:PLN03218   777 LSQAKEDGIKPNLVMCRCITG-LCL-RRFEKACALGEPVVSFDSGRPQIE 824
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 587-636 1.35e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 73.94  E-value: 1.35e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1955868975 587 PSVVTYTTLMNAYCEVGNMQEMFDLLHEMEANSVVPTHVTYTVLIKGLCR 636
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 377-426 5.98e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.84  E-value: 5.98e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1955868975 377 PDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCK 426
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 692-740 7.38e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 49.28  E-value: 7.38e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1955868975 692 PTQVTYNVLINGLCMYGDLKDVDRMLVSMEDRNISLTKVAYMTLIKAHC 740
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 730-776 3.21e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.36  E-value: 3.21e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1955868975 730 VAYMTLIKAHCAKGEVSKALGFFNQMLAKSFVISIRDYSAIINRLCK 776
Cdd:pfam13041   4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 520-554 5.47e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.29  E-value: 5.47e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1955868975 520 ILYNIMIDGYVRLGDITEAMQLYYRMIERRITPSI 554
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
375-550 6.43e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.55  E-value: 6.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 375 LNPDLV-TYTILMCGHCQMGNIEEALKLRQETLSRGFKlNIISYSVLLSCLCKVGQIEEALTLLDEmeTLCLKPDFI-VY 452
Cdd:COG0457     3 LDPDDAeAYNNLGLAYRRLGRYEEAIEDYEKALELDPD-DAEALYNLGLAYLRLGRYEEALADYEQ--ALELDPDDAeAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 453 SILIHGLCKQGLVQRAYQLYEQmcLKRIFPNY---FAQRAVLLglFKNGNISEARKYFDALTHMDlIEDVILYNIMIDGY 529
Cdd:COG0457    80 NNLGLALQALGRYEEALEDYDK--ALELDPDDaeaLYNLGLAL--LELGRYDEAIEAYERALELD-PDDADALYNLGIAL 154

                         170       180
                  ....*....|....*....|.
gi 1955868975 530 VRLGDITEAMQLYYRMIERRI 550
Cdd:COG0457   155 EKLGRYEEALELLEKLEAAAL 175
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 380-414 7.37e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.52  E-value: 7.37e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1955868975 380 VTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNI 414
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 207-251 2.68e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 39.27  E-value: 2.68e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1955868975 207 SVPTYNSLLHNL---RHTDIMWDIYNEIKVSGAPHGEYTTSILIHGLC 251
Cdd:pfam13041   2 DVVTYNTLINGYckkGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 695-728 1.10e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.05  E-value: 1.10e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1955868975 695 VTYNVLINGLCMYGDLKDVDRMLVSMEDRNISLT 728
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 767-799 1.55e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 1.55e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1955868975 767 YSAIINRLCKRGLITEAKHFFVMMLSEGETPDS 799
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 730-764 2.37e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.28  E-value: 2.37e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1955868975 730 VAYMTLIKAHCAKGEVSKALGFFNQMLAKSFVISI 764
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 253-696 9.89e-31

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 130.38  E-value: 9.89e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  253 QSKLQDAISFLQDSNEvdgPSIVSINTIMSKLCKVGLIDVARSFLSLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFT 332
Cdd:PLN03218   419 QRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  333 DDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLKGLNPDLVTYTILM--CGhcqmgnieealklrqetlsrgf 410
Cdd:PLN03218   496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIsaCG---------------------- 553

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  411 klniisysvllsclcKVGQIEEALTLLDEM--ETLCLKPDFIVYSILIHGLCKQGLVQRAYQLYEQMCLKRI--FPNYFA 486
Cdd:PLN03218   554 ---------------QSGAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIkgTPEVYT 618

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  487 qrAVLLGLFKNGNISEARKYFDALTHMDLIEDVILYNIMIDGYVRLGDITEAMQLYYRMIERRITPSIVTFNTLVNGFCR 566
Cdd:PLN03218   619 --IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  567 RGDLMEARKMMEVIRLNGLLPSVVTYTTLMNAYCEVGNMQEMFDLLHEMEANSVVPTHVTYTVLIKGLCRQNKMHESLQL 646
Cdd:PLN03218   697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 1955868975  647 LEYMYAKGLMPDPVTYNTIIQcFCKgRDIAKAFQLYNKMLLHNLDPTQVT 696
Cdd:PLN03218   777 LSQAKEDGIKPNLVMCRCITG-LCL-RRFEKACALGEPVVSFDSGRPQIE 824
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 283-706 1.94e-30

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 129.23  E-value: 1.94e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  283 KLCKVGLIDVARSFLSLMVKNGLLPDSYSYNILVHGLCVA-GSMDEALEFTDDMEkhgvEPDVVTYNTLakgflllglMS 361
Cdd:PLN03218   379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKqRAVKEAFRFAKLIR----NPTLSTFNML---------MS 445

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  362 ---------GARKVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGQIEE 432
Cdd:PLN03218   446 vcassqdidGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  433 ALTLLDEMETLCLKPDFIVYSILIHGLCKQGLVQRAYQLYEQMC--LKRIFPNYFAQRAVLLGLFKNGNISEARKYFDAL 510
Cdd:PLN03218   526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  511 THMDLIEDVILYNIMIDGYVRLGDITEAMQLYYRMIERRITPSIVTFNTLVNGFCRRGDLMEARKMMEVIRLNGLLPSVV 590
Cdd:PLN03218   606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  591 TYTTLMNAYCEVGNMQEMFDLLHEMEANSVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLMPDPVTYNTIIQCFC 670
Cdd:PLN03218   686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765

                          410       420       430
                   ....*....|....*....|....*....|....*.
gi 1955868975  671 KGRDIAKAFQLYNKMLLHNLDPTQVTYNVLInGLCM 706
Cdd:PLN03218   766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCL 800
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 155-506 2.16e-25

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 113.05  E-value: 2.16e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  155 ASTFCDLLLNkfrnwdSNGVVWDMLAFSYSRLEMIHDALFVIAKMKDLNLQASVPTYNSLLHNLRHT---DIMWDIYNEI 231
Cdd:PLN03218   425 AFRFAKLIRN------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSgkvDAMFEVFHEM 498

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  232 KVSGAPHGEYTTSILIHGL----------------------------------CEQS-KLQDAISFLQD----SNEVDgP 272
Cdd:PLN03218   499 VNAGVEANVHTFGALIDGCaragqvakafgaygimrsknvkpdrvvfnalisaCGQSgAVDRAFDVLAEmkaeTHPID-P 577

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  273 SIVSINTIMSKLCKVGLIDVARSFLSLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAK 352
Cdd:PLN03218   578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  353 GFLLLGLMSGARKVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGQIEE 432
Cdd:PLN03218   658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  433 ALTLLDEMETLCLKPDFIVYSILIHGLCKQGLVQRAYQLYEQ------------------MCLKRIfpnyfaQRAVLLGL 494
Cdd:PLN03218   738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQakedgikpnlvmcrcitgLCLRRF------EKACALGE 811

                          410
                   ....*....|....*.
gi 1955868975  495 ----FKNGNISEARKY 506
Cdd:PLN03218   812 pvvsFDSGRPQIENKW 827
PLN03077 PLN03077
Protein ECB2; Provisional
 216-808 4.22e-22

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 102.24  E-value: 4.22e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 216 HNLRHTDIMWDIYNEIK---VSGAPHGEYTT---SILIHGLCEQSKLQDAISFLQDSNEVDGP----SIVSINTIM---- 281
Cdd:PLN03077   21 HKAPNVLPYWNFHGRKRsrgLSVAASSSSSThdsNSQLRALCSHGQLEQALKLLESMQELRVPvdedAYVALFRLCewkr 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 282 -----SKLCKVGLIDVAR-------SFLSLMVKNGLLPDS------------YSYNILVHGLCVAGSMDEALEFTDDMEK 337
Cdd:PLN03077  101 aveegSRVCSRALSSHPSlgvrlgnAMLSMFVRFGELVHAwyvfgkmperdlFSWNVLVGGYAKAGYFDEALCLYHRMLW 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 338 HGVEPDVVTYNTLAKGflLLGLMSGAR-KVVQKMLLK---GLNPDLVTYTILMCGHCqmGNIEEALKLrqetLSRGFKLN 413
Cdd:PLN03077  181 AGVRPDVYTFPCVLRT--CGGIPDLARgREVHAHVVRfgfELDVDVVNALITMYVKC--GDVVSARLV----FDRMPRRD 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 414 IISYSVLLSCLCKVGQIEEALTLLDEMETLCLKPDFIVYSILIHGLCKQGLVQRAYQLYeQMCLKRIFPNYFAQRAVLLG 493
Cdd:PLN03077  253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH-GYVVKTGFAVDVSVCNSLIQ 331

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 494 LFKN-GNISEARKYFdalTHMDLiEDVILYNIMIDGYVRLGDITEAMQLYYRMIERRITPSIVTFNTLVNGFCRRGDLME 572
Cdd:PLN03077  332 MYLSlGSWGEAEKVF---SRMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 573 ARKMMEVIRLNGLLPSVVTYTTLMNAYCEVGNMQEMFDLLHEMEANSVvpthVTYTVLIKGLCRQNKMHESLQLLEYMYA 652
Cdd:PLN03077  408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV----ISWTSIIAGLRLNNRCFEALIFFRQMLL 483

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 653 KgLMPDPVTY-----------------------------------NTIIQCFCKGRDIAKAFQLYNkmlLHNLDptQVTY 697
Cdd:PLN03077  484 T-LKPNSVTLiaalsacarigalmcgkeihahvlrtgigfdgflpNALLDLYVRCGRMNYAWNQFN---SHEKD--VVSW 557

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 698 NVLINGLCMYGDLKDVDRMLVSMEDRNISLTKVAYMTLIKAHCAKGEVSKALGFFNQMLAK-SFVISIRDYSAIINRLCK 776
Cdd:PLN03077  558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGR 637

                         650       660       670
                  ....*....|....*....|....*....|..
gi 1955868975 777 RGLITEAKHFFVMMLSegeTPDSEICETMLNA 808
Cdd:PLN03077  638 AGKLTEAYNFINKMPI---TPDPAVWGALLNA 666
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 319-662 3.42e-21

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 99.17  E-value: 3.42e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 319 LCVAGSMDEALEFTDDMEKHG-VEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEE 397
Cdd:PLN03081   97 LVACGRHREALELFEILEAGCpFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 398 ALKLRQETLSRgfklNIISYSVLLSCLCKVGQIEEALTLLDEMETLCLKPDFIVYSILIHGLCKQGLVQRAYQLYEQMCL 477
Cdd:PLN03081  177 ARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 478 KRIFPNYFAQRAVLLGLFKNGNISEARKYFDALTHmdliEDVILYNIMIDGYVRLGDITEAMQLYYRMIERRITPSIVTF 557
Cdd:PLN03081  253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 558 NTLVNGFCRRGDLMEARKMMEVIRLNGLLPSVVTYTTLMNAYCEVGNMQEMFDLLHEMEANSVvpthVTYTVLIKGLCRQ 637
Cdd:PLN03081  329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNH 404

                         330       340
                  ....*....|....*....|....*
gi 1955868975 638 NKMHESLQLLEYMYAKGLMPDPVTY 662
Cdd:PLN03081  405 GRGTKAVEMFERMIAEGVAPNHVTF 429
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 413-798 1.42e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 94.56  E-value: 1.42e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  413 NIISYSVLLSCLCKVGQIEEALTLLDEMETLCLKPDFIVYSILIHGLCK-QGLVQRAYQLyeqmclKRIFPNYFAQR-AV 490
Cdd:PLN03218   369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKkQRAVKEAFRF------AKLIRNPTLSTfNM 442

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  491 LLGLFKNG-NISEARKYFDALTHMDLIEDVILYNIMIDGYVRLGDITEAMQLYYRMIERRITPSIVTFNTLVNGFCRRGD 569
Cdd:PLN03218   443 LMSVCASSqDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  570 LMEARKMMEVIRLNGLLPSVVTYTTLMNAYCEVGNMQEMFDLLHEM--EANSVVPTHVTYTVLIKGLCRQNKMHESLQLL 647
Cdd:PLN03218   523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANAGQVDRAKEVY 602

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  648 EYMYAKGLMPDPVTYnTIIQCFC--KGrDIAKAFQLYNKMLLHNLDPTQVTYNVLINglcMYGDLKDVDR---MLVSMED 722
Cdd:PLN03218   603 QMIHEYNIKGTPEVY-TIAVNSCsqKG-DWDFALSIYDDMKKKGVKPDEVFFSALVD---VAGHAGDLDKafeILQDARK 677

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1955868975  723 RNISLTKVAYMTLIKAHCAKGEVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKHFFVMMLSEGETPD 798
Cdd:PLN03218   678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753
PLN03077 PLN03077
Protein ECB2; Provisional
 262-648 1.19e-17

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 87.98  E-value: 1.19e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 262 FLQDSNEVDgPSIVSINTIMSKLCKVGLIDVARSFLSLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDMEKHgve 341
Cdd:PLN03077  277 FTMRELSVD-PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK--- 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 342 pDVVTYNTLAKGFLLLGLMSGARKVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLL 421
Cdd:PLN03077  353 -DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 422 SCLCKVGQIEEALTLLDEMEtlclKPDFIVYSILIHGLCKQGLVQRAYQLYEQMCLKrIFPNYFAQRAVLLGLFKNGNIS 501
Cdd:PLN03077  432 EMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALM 506

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 502 EARKY----------FDALTHMDLIE--------------------DVILYNIMIDGYVRLGDITEAMQLYYRMIERRIT 551
Cdd:PLN03077  507 CGKEIhahvlrtgigFDGFLPNALLDlyvrcgrmnyawnqfnshekDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 552 PSIVTFNTLVNGFCRRGDLMEARKMMEVIRLN-GLLPSVVTYTTLMNAYCEVGNMQEMFDLLHEMeanSVVPTHVTYTVL 630
Cdd:PLN03077  587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGAL 663

                         410
                  ....*....|....*...
gi 1955868975 631 IKGlCRqnkMHESLQLLE 648
Cdd:PLN03077  664 LNA-CR---IHRHVELGE 677
PLN03077 PLN03077
Protein ECB2; Provisional
 421-829 3.70e-17

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 86.44  E-value: 3.70e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 421 LSCLCKVGQIEEALTLLDEMETLCLKPDFIVYSILIHgLCKQglvQRAYQLYEQMC---LKRIfpNYFAQR---AVLLGL 494
Cdd:PLN03077   58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEW---KRAVEEGSRVCsraLSSH--PSLGVRlgnAMLSMF 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 495 FKNGNISEARKYFDALTHMDLIEdvilYNIMIDGYVRLGDITEAMQLYYRMIERRITPSIVTF----------------- 557
Cdd:PLN03077  132 VRFGELVHAWYVFGKMPERDLFS----WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFpcvlrtcggipdlargr 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 558 ------------------NTLVNGFCRRGDLMEARKMMEVIRLNgllpSVVTYTTLMNAYCEVGNMQEMFDLLHEMEANS 619
Cdd:PLN03077  208 evhahvvrfgfeldvdvvNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELS 283

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 620 VVPTHVTYTVLI--------KGLCRQ--------------------NKMHESLQLL---EYMYAKGLMPDPVTYNTIIQC 668
Cdd:PLN03077  284 VDPDLMTITSVIsacellgdERLGREmhgyvvktgfavdvsvcnslIQMYLSLGSWgeaEKVFSRMETKDAVSWTAMISG 363

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 669 FCKGRDIAKAFQLYNKMLLHNLDPTQVTYNVLINGLCMYGDLkDVDRMLVSMEDRN--ISLTKVAYmTLIKAHCAKGEVS 746
Cdd:PLN03077  364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL-DVGVKLHELAERKglISYVVVAN-ALIEMYSKCKCID 441

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 747 KALGFFNQMLAKSfVISirdYSAIINRLCKRGLITEAKHFFVMMLSEGEtPDSEICETMLNAFHQQGDNSSVFEFLAMVV 826
Cdd:PLN03077  442 KALEVFHNIPEKD-VIS---WTSIIAGLRLNNRCFEALIFFRQMLLTLK-PNSVTLIAALSACARIGALMCGKEIHAHVL 516


                  ...
gi 1955868975 827 KSG 829
Cdd:PLN03077  517 RTG 519
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 587-636 1.35e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 73.94  E-value: 1.35e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1955868975 587 PSVVTYTTLMNAYCEVGNMQEMFDLLHEMEANSVVPTHVTYTVLIKGLCR 636
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 657-705 2.35e-15

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 70.47  E-value: 2.35e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1955868975 657 PDPVTYNTIIQCFCKGRDIAKAFQLYNKMLLHNLDPTQVTYNVLINGLC 705
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 272-654 1.11e-14

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 77.99  E-value: 1.11e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 272 PSIVSINTIMSKLCKVG-LIDVARSFLSLMVKNGllpdsYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTL 350
Cdd:PLN03081  156 PDQYMMNRVLLMHVKCGmLIDARRLFDEMPERNL-----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 351 AKGFLLLGLMSGARKVVQKMLLKGLNPDlvtyTILMCGHCQM----GNIEEAlklrqetlSRGF----KLNIISYSVLLS 422
Cdd:PLN03081  231 LRASAGLGSARAGQQLHCCVLKTGVVGD----TFVSCALIDMyskcGDIEDA--------RCVFdgmpEKTTVAWNSMLA 298

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 423 CLCKVGQIEEALTLLDEMETLCLKPDFIVYSILIHGLCKQGLVQRAYQLYEQMcLKRIFPNYFAQRAVLLGLF-KNGNIS 501
Cdd:PLN03081  299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL-IRTGFPLDIVANTALVDLYsKWGRME 377

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 502 EARKYFDALTHMDLIEdvilYNIMIDGYVRLGDITEAMQLYYRMIERRITPSIVTFNTLVNGfCRRGDLMEARK-----M 576
Cdd:PLN03081  378 DARNVFDRMPRKNLIS----WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYSGLSEQGWeifqsM 452

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 577 MEVIRLNgllPSVVTYTTLMNAYCEVGNMQEMFDLLHEMeanSVVPTHVTYTVLIKGlCRqnkMHESLQL----LEYMYA 652
Cdd:PLN03081  453 SENHRIK---PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA-CR---IHKNLELgrlaAEKLYG 522


                  ..
gi 1955868975 653 KG 654
Cdd:PLN03081  523 MG 524
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 307-354 4.76e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 63.92  E-value: 4.76e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1955868975 307 PDSYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGF 354
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 464-814 4.88e-13

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 72.98  E-value: 4.88e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 464 LVQRAYQLYEQMCLKRIF---------PNYFAQRAVLLGLFKNGNISEARKYFDALTHMDLIEdvilYNIMIDGYVRLGD 534
Cdd:PLN03081  129 LVEACIALKSIRCVKAVYwhvessgfePDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLAS----WGTIIGGLVDAGN 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 535 ITEAMQLYYRMIERRITPSIVTFNT-----------------------------------LVNGFCRRGDLMEARKMMEV 579
Cdd:PLN03081  205 YREAFALFREMWEDGSDAEPRTFVVmlrasaglgsaragqqlhccvlktgvvgdtfvscaLIDMYSKCGDIEDARCVFDG 284

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 580 irlnglLP--SVVTYTTLMNAYCEVGNMQEMFDLLHEMEANSVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLMP 657
Cdd:PLN03081  285 ------MPekTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 658 DPVTYNTIIQCFCKGRDIAKAFQLYNKMLLHNLdptqVTYNVLINGLCMYGDLKDVDRMLVSMEDRNISLTKVAYMTLIK 737
Cdd:PLN03081  359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1955868975 738 AHCAKGEVSKALGFFnQMLAKSFVISIR--DYSAIINRLCKRGLITEAkhfFVMMLSEGETPDSEICETMLNAFHQQGD 814
Cdd:PLN03081  435 ACRYSGLSEQGWEIF-QSMSENHRIKPRamHYACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLTACRIHKN 509
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 622-671 4.90e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 63.92  E-value: 4.90e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1955868975 622 PTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLMPDPVTYNTIIQCFCK 671
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 518-566 8.15e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 63.54  E-value: 8.15e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1955868975 518 DVILYNIMIDGYVRLGDITEAMQLYYRMIERRITPSIVTFNTLVNGFCR 566
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 552-600 1.69e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.38  E-value: 1.69e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1955868975 552 PSIVTFNTLVNGFCRRGDLMEARKMMEVIRLNGLLPSVVTYTTLMNAYC 600
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 272-320 4.12e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 61.23  E-value: 4.12e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1955868975 272 PSIVSINTIMSKLCKVGLIDVARSFLSLMVKNGLLPDSYSYNILVHGLC 320
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 377-426 5.98e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.84  E-value: 5.98e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1955868975 377 PDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCK 426
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 413-461 5.39e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.14  E-value: 5.39e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1955868975 413 NIISYSVLLSCLCKVGQIEEALTLLDEMETLCLKPDFIVYSILIHGLCK 461
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 286-616 6.80e-11

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 66.05  E-value: 6.80e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 286 KVGLIDVARSFLSLMVKNGLLpdsySYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARK 365
Cdd:PLN03081  271 KCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 366 vvqkmllkglnpdlvtytilmcGHCQMgnieealklrqetLSRGFKLNIISYSVLLSCLCKVGQIEEALTLLDEMEtlcl 445
Cdd:PLN03081  347 ----------------------AHAGL-------------IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP---- 387

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 446 KPDFIVYSILIHGLCKQGLVQRAYQLYEQMCLKRIFPNYFAQRAVLLGLFKNGNISEARKYFDALTHMDLIED-VILYNI 524
Cdd:PLN03081  388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPrAMHYAC 467

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 525 MIDGYVRLGDITEAmqlyYRMIERR-ITPSIVTFNTLVNGfCR-RGDLMEARKMMEviRLNGLLPSVV-TYTTLMNAYCE 601
Cdd:PLN03081  468 MIELLGREGLLDEA----YAMIRRApFKPTVNMWAALLTA-CRiHKNLELGRLAAE--KLYGMGPEKLnNYVVLLNLYNS 540

                         330
                  ....*....|....*
gi 1955868975 602 VGNMQEMFDLLHEME 616
Cdd:PLN03081  541 SGRQAEAAKVVETLK 555
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 342-391 2.79e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.22  E-value: 2.79e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1955868975 342 PDVVTYNTLAKGFLLLGLMSGARKVVQKMLLKGLNPDLVTYTILMCGHCQ 391
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 653-685 1.41e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 50.81  E-value: 1.41e-08
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1955868975 653 KGLMPDPVTYNTIIQCFCKGRDIAKAFQLYNKM 685
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 444-475 2.45e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 50.42  E-value: 2.45e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1955868975 444 CLKPDFIVYSILIHGLCKQGLVQRAYQLYEQM 475
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 303-336 6.84e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 48.88  E-value: 6.84e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1955868975 303 NGLLPDSYSYNILVHGLCVAGSMDEALEFTDDME 336
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 692-740 7.38e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 49.28  E-value: 7.38e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1955868975 692 PTQVTYNVLINGLCMYGDLKDVDRMLVSMEDRNISLTKVAYMTLIKAHC 740
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 300-447 7.44e-08

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 53.55  E-value: 7.44e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 300 MVKNGLLPDSYSYNILVHgLCVAG----------SMDEALEFTDDMEKHGVEPDVVTYNTLAKgflllgLMSGAR----- 364
Cdd:pfam17177  37 AKAEGVRLAQYHYNVLLY-LCSKAadatdlkpqlAADRGFEVFEAMKAQGVSPNEATYTAVAR------LAAAKGdgdla 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 365 -KVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGQIEEALTLLDEMETL 443
Cdd:pfam17177 110 fDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVYAYLHRLRDA 189


                  ....
gi 1955868975 444 CLKP 447
Cdd:pfam17177 190 VRQV 193
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 548-578 1.62e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 48.11  E-value: 1.62e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1955868975 548 RRITPSIVTFNTLVNGFCRRGDLMEARKMME 578
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLD 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 583-616 1.64e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 48.11  E-value: 1.64e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1955868975 583 NGLLPSVVTYTTLMNAYCEVGNMQEMFDLLHEME 616
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 373-404 2.07e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 47.73  E-value: 2.07e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1955868975 373 KGLNPDLVTYTILMCGHCQMGNIEEALKLRQE 404
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 634-823 2.26e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 54.88  E-value: 2.26e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  634 LCRQNKMHESLQLLEYMYAKGLMPDPVTYNTIIQCFCKG-RDIAKAFQlYNKMLLhnlDPTQVTYNVLINGLCMYGDLKD 712
Cdd:PLN03218   380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKqRAVKEAFR-FAKLIR---NPTLSTFNMLMSVCASSQDIDG 455

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  713 VDRMLVSMEDRNISLTKVAYMTLIKAhCAK-GEVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKHFFVMML 791
Cdd:PLN03218   456 ALRVLRLVQEAGLKADCKLYTTLIST-CAKsGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1955868975  792 SEGETPDSEICETMLNAFHQQGDNSSVFEFLA 823
Cdd:PLN03218   535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 730-776 3.21e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.36  E-value: 3.21e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1955868975 730 VAYMTLIKAHCAKGEVSKALGFFNQMLAKSFVISIRDYSAIINRLCK 776
Cdd:pfam13041   4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 192-474 4.90e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 53.73  E-value: 4.90e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  192 ALFVIAKMKDLNLQASVPTYNSLLHNLRHT---DIMWDIYNEIKVSGAPHGEYTTSILIHGLCEQSKLQDAISFLQDSnE 268
Cdd:PLN03218   598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKgdwDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA-R 676

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  269 VDG--PSIVSINTIMSKLCKVGLIDVARSFLSLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVT 346
Cdd:PLN03218   677 KQGikLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  347 YNTLakgflllgLMSGARKV---VQKMLLKGLNPDLVTYTILMCG------------HCQMGN-----------IEE--- 397
Cdd:PLN03218   757 YSIL--------LVASERKDdadVGLDLLSQAKEDGIKPNLVMCRcitglclrrfekACALGEpvvsfdsgrpqIENkwt 828

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975  398 --ALKLRQETLSRGFKLNIISYSVLLSCLCKVGQIEEALTLLDEMETLCLKPDFIVYSILIHGLckqGLVQ-RAYQLYEQ 474
Cdd:PLN03218   829 swALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDpRAFSLLEE 905
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 520-554 5.47e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.29  E-value: 5.47e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1955868975 520 ILYNIMIDGYVRLGDITEAMQLYYRMIERRITPSI 554
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
375-550 6.43e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.55  E-value: 6.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 375 LNPDLV-TYTILMCGHCQMGNIEEALKLRQETLSRGFKlNIISYSVLLSCLCKVGQIEEALTLLDEmeTLCLKPDFI-VY 452
Cdd:COG0457     3 LDPDDAeAYNNLGLAYRRLGRYEEAIEDYEKALELDPD-DAEALYNLGLAYLRLGRYEEALADYEQ--ALELDPDDAeAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 453 SILIHGLCKQGLVQRAYQLYEQmcLKRIFPNY---FAQRAVLLglFKNGNISEARKYFDALTHMDlIEDVILYNIMIDGY 529
Cdd:COG0457    80 NNLGLALQALGRYEEALEDYDK--ALELDPDDaeaLYNLGLAL--LELGRYDEAIEAYERALELD-PDDADALYNLGIAL 154

                         170       180
                  ....*....|....*....|.
gi 1955868975 530 VRLGDITEAMQLYYRMIERRI 550
Cdd:COG0457   155 EKLGRYEEALELLEKLEAAAL 175
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 214-352 6.72e-07

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 50.86  E-value: 6.72e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 214 LLHNL----RHTDIM--WDIYNEIKVSGAPHGEYTTSILIHgLCeqSKLQDAISFLQDSNEVDGPSI--------VSIN- 278
Cdd:pfam17177  14 LRFQLdkcsKHADATgaLALYDAAKAEGVRLAQYHYNVLLY-LC--SKAADATDLKPQLAADRGFEVfeamkaqgVSPNe 90

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1955868975 279 ---TIMSKLC-KVGLIDVARSFLSLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAK 352
Cdd:pfam17177  91 atyTAVARLAaAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLK 168
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 620-650 6.97e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 46.18  E-value: 6.97e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1955868975 620 VVPTHVTYTVLIKGLCRQNKMHESLQLLEYM 650
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 408-441 8.90e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 45.80  E-value: 8.90e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1955868975 408 RGFKLNIISYSVLLSCLCKVGQIEEALTLLDEME 441
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 531-701 9.23e-07

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 50.47  E-value: 9.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 531 RLGDITEAMQLYYRMIERRITPSIVTFNTLVNgFCRRGD----------LMEARKMMEVIRLNGLLPSVVTYTTLMNAYC 600
Cdd:pfam17177  23 KHADATGALALYDAAKAEGVRLAQYHYNVLLY-LCSKAAdatdlkpqlaADRGFEVFEAMKAQGVSPNEATYTAVARLAA 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 601 EVGNMQEMFDLLHEMEAnsvvpthvtytvlikglcrqnkmheslqlleymyaKGLMPDPVTYNTIIQCFCKGRDIAKAFQ 680
Cdd:pfam17177 102 AKGDGDLAFDLVKEMEA-----------------------------------AGVSPRLRSYSPALHAYCEAGDADKAYE 146

                         170       180
                  ....*....|....*....|.
gi 1955868975 681 LYNKMLLHNLDPTQVTYNVLI 701
Cdd:pfam17177 147 VEEHMLAHGVELEEPELAALL 167
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 310-344 2.38e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 44.75  E-value: 2.38e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1955868975 310 YSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDV 344
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 590-623 2.62e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 44.37  E-value: 2.62e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1955868975 590 VTYTTLMNAYCEVGNMQEMFDLLHEMEANSVVPT 623
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 300-354 5.51e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 44.66  E-value: 5.51e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1955868975 300 MVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGF 354
Cdd:pfam13812   6 MVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 447-483 6.04e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.89  E-value: 6.04e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1955868975 447 PDFIVYSILIHGLCKQGLVQRAYQLYEQMCLKRIFPN 483
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPN 37
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 660-693 1.09e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 1.09e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1955868975 660 VTYNTIIQCFCKGRDIAKAFQLYNKMLLHNLDPT 693
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 333-386 1.24e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 43.50  E-value: 1.24e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1955868975 333 DDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLKGLNPDLVTYTILM 386
Cdd:pfam13812   4 REMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 611-666 2.09e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 42.73  E-value: 2.09e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1955868975 611 LLHEMEANSVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLMPDPVTYNTII 666
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 520-550 2.14e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 42.07  E-value: 2.14e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1955868975 520 ILYNIMIDGYVRLGDITEAMQLYYRMIERRI 550
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 584-632 2.29e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 42.73  E-value: 2.29e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1955868975 584 GLLPSVVTYTTLMNAYCEVGNMQEMFDLLHEMEANSVVPTHVTYTVLIK 632
Cdd:pfam13812  10 GIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 380-414 7.37e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.52  E-value: 7.37e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1955868975 380 VTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNI 414
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 415-448 7.45e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.52  E-value: 7.45e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1955868975 415 ISYSVLLSCLCKVGQIEEALTLLDEMETLCLKPD 448
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 450-483 8.30e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 8.30e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1955868975 450 IVYSILIHGLCKQGLVQRAYQLYEQMCLKRIFPN 483
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 625-658 9.81e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 9.81e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1955868975 625 VTYTVLIKGLCRQNKMHESLQLLEYMYAKGLMPD 658
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 518-567 1.24e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.80  E-value: 1.24e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1955868975 518 DVILYNIMIDGYVRLGDITEAMQLYYRMIERRITPSIVTFNTLVNGFCRR 567
Cdd:pfam13812  14 NVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 590-620 1.31e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.76  E-value: 1.31e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1955868975 590 VTYTTLMNAYCEVGNMQEMFDLLHEMEANSV 620
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 540-632 1.83e-04

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 43.54  E-value: 1.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 540 QLYYRMIERRITPSIVTFNTLVNGFCRRGDLMEARKMMEVIRLNGLLPSVVTYTTLMNAYCEVGNMQEMFDLLHEMEANS 619
Cdd:pfam17177  76 EVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHG 155

                          90
                  ....*....|...
gi 1955868975 620 VVPTHVTYTVLIK 632
Cdd:pfam17177 156 VELEEPELAALLK 168
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 338-370 1.93e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 39.25  E-value: 1.93e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1955868975 338 HGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKM 370
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 545-599 2.21e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.03  E-value: 2.21e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1955868975 545 MIERRITPSIVTFNTLVNGFCRRGDLMEARKMMEVIRLNGLLPSVVTYTTLMNAY 599
Cdd:pfam13812   6 MVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 350-615 2.66e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 2.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 350 LAKGFLLLG---LMSG----ARKVVQKMLLkgLNPDLV-TYTILMCGHCQMGNIEEALKLRQETLSRGfKLNIISYSVLL 421
Cdd:COG2956     7 AALGWYFKGlnyLLNGqpdkAIDLLEEALE--LDPETVeAHLALGNLYRRRGEYDRAIRIHQKLLERD-PDRAEALLELA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 422 SCLCKVGQIEEALTLLDEMETlcLKPDFI-VYSILIHGLCKQGLVQRAYQLYEQmcLKRIFPNYfAQRAVLLG--LFKNG 498
Cdd:COG2956    84 QDYLKAGLLDRAEELLEKLLE--LDPDDAeALRLLAEIYEQEGDWEKAIEVLER--LLKLGPEN-AHAYCELAelYLEQG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 499 NISEARKYFD-ALTHMDliEDVILYNIMIDGYVRLGDITEAMQLYYRMIERRITpSIVTFNTLVNGFCRRGDLMEARKMM 577
Cdd:COG2956   159 DYDEAIEALEkALKLDP--DCARALLLLAELYLEQGDYEEAIAALERALEQDPD-YLPALPRLAELYEKLGDPEEALELL 235

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1955868975 578 EviRLNGLLPSVVTYTTLMNAYCEVGNMQEMFDLLHEM 615
Cdd:COG2956   236 R--KALELDPSDDLLLALADLLERKEGLEAALALLERQ 271
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 207-251 2.68e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 39.27  E-value: 2.68e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1955868975 207 SVPTYNSLLHNL---RHTDIMWDIYNEIKVSGAPHGEYTTSILIHGLC 251
Cdd:pfam13041   2 DVVTYNTLINGYckkGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 555-589 3.01e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 3.01e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1955868975 555 VTFNTLVNGFCRRGDLMEARKMMEVIRLNGLLPSV 589
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 310-340 3.14e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.60  E-value: 3.14e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1955868975 310 YSYNILVHGLCVAGSMDEALEFTDDMEKHGV 340
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 646-709 3.69e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 39.26  E-value: 3.69e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955868975 646 LLEYMYAKGLMPDPVTYNTIIQCFCKGRDIAKAFQLYNKMLLHNLDPTQVTYNVLINglcMYGD 709
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG---VIGG 62
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 688-721 4.66e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.10  E-value: 4.66e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1955868975 688 HNLDPTQVTYNVLINGLCMYGDLKDVDRMLVSME 721
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 415-441 6.63e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.83  E-value: 6.63e-04
                          10        20
                  ....*....|....*....|....*..
gi 1955868975 415 ISYSVLLSCLCKVGQIEEALTLLDEME 441
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMK 27
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 461-648 8.61e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.02  E-value: 8.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 461 KQGLVQRAYQLYEQmcLKRIFPNYFAQRAVLLGLF-KNGNISEARKYFDALTHMDLiEDVILYNIMIDGYVRLGDITEAM 539
Cdd:COG2956    88 KAGLLDRAEELLEK--LLELDPDDAEALRLLAEIYeQEGDWEKAIEVLERLLKLGP-ENAHAYCELAELYLEQGDYDEAI 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 540 QLYYRMIErrITPSIV-TFNTLVNGFCRRGDLMEARKMME-VIRLNGLLPSVvtYTTLMNAYCEVGNMQEMFDLLHEMEA 617
Cdd:COG2956   165 EALEKALK--LDPDCArALLLLAELYLEQGDYEEAIAALErALEQDPDYLPA--LPRLAELYEKLGDPEEALELLRKALE 240

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1955868975 618 NSvvPTHVTYTVLIKGLCRQNKMHESLQLLE 648
Cdd:COG2956   241 LD--PSDDLLLALADLLERKEGLEAALALLE 269
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 380-410 9.83e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.06  E-value: 9.83e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1955868975 380 VTYTILMCGHCQMGNIEEALKLRQETLSRGF 410
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 365-422 9.87e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.11  E-value: 9.87e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1955868975 365 KVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLS 422
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 695-728 1.10e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.05  E-value: 1.10e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1955868975 695 VTYNVLINGLCMYGDLKDVDRMLVSMEDRNISLT 728
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 767-799 1.55e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 1.55e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1955868975 767 YSAIINRLCKRGLITEAKHFFVMMLSEGETPDS 799
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 660-690 1.56e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.67  E-value: 1.56e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1955868975 660 VTYNTIIQCFCKGRDIAKAFQLYNKMLLHNL 690
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 730-764 2.37e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.28  E-value: 2.37e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1955868975 730 VAYMTLIKAHCAKGEVSKALGFFNQMLAKSFVISI 764
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 625-655 3.78e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.52  E-value: 3.78e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1955868975 625 VTYTVLIKGLCRQNKMHESLQLLEYMYAKGL 655
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 610-743 3.80e-03

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 39.69  E-value: 3.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 610 DLLHEMEANSVVPTHVTYTVLIKgLC----------RQNKMHESLQLLEYMYAKGLMPDPVTYNTIIQCFCKGRDIAKAF 679
Cdd:pfam17177  32 ALYDAAKAEGVRLAQYHYNVLLY-LCskaadatdlkPQLAADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAF 110

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955868975 680 QLYNKMLLHNLDPTQVTYNVLINGLCMYGDLK---DVDRMLVSMEdrnISLTKVAYMTLIKAHCAKG 743
Cdd:pfam17177 111 DLVKEMEAAGVSPRLRSYSPALHAYCEAGDADkayEVEEHMLAHG---VELEEPELAALLKVSAKAG 174
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 518-545 4.10e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.40  E-value: 4.10e-03
                          10        20
                  ....*....|....*....|....*...
gi 1955868975 518 DVILYNIMIDGYVRLGDITEAMQLYYRM 545
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 555-585 4.25e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.52  E-value: 4.25e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1955868975 555 VTFNTLVNGFCRRGDLMEARKMMEVIRLNGL 585
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 695-725 5.28e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.13  E-value: 5.28e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1955868975 695 VTYNVLINGLCMYGDLKDVDRMLVSMEDRNI 725
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 400-456 5.75e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.18  E-value: 5.75e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1955868975 400 KLRQETLSRGFKLNIISYSVLLSCLCKVGQIEEALTLLDEMETLCLKPDFIVYSILI 456
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 275-309 6.04e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 6.04e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1955868975 275 VSINTIMSKLCKVGLIDVARSFLSLMVKNGLLPDS 309
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 723-755 7.05e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.01  E-value: 7.05e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1955868975 723 RNISLTKVAYMTLIKAHCAKGEVSKALGFFNQM 755
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 450-480 7.10e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.75  E-value: 7.10e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1955868975 450 IVYSILIHGLCKQGLVQRAYQLYEQMCLKRI 480
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 345-378 7.21e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 34.74  E-value: 7.21e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1955868975 345 VTYNTLAKGFLLLGLMSGARKVVQKMLLKGLNPD 378
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PLN03077 PLN03077
Protein ECB2; Provisional
 265-410 7.82e-03

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 39.83  E-value: 7.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955868975 265 DSNEVDgpsIVSINTIMSKLCKVGLIDVARSFLSLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDME-KHGVEPD 343
Cdd:PLN03077  548 NSHEKD---VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEeKYSITPN 624

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955868975 344 VVTYNTLAKGFLLLGLMSGARKVVQKMLLKglnPDLVTYTILMCG-----HCQMGNIEEALKLRQETLSRGF 410
Cdd:PLN03077  625 LKHYACVVDLLGRAGKLTEAYNFINKMPIT---PDPAVWGALLNAcrihrHVELGELAAQHIFELDPNSVGY 693
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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