NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1955866675|ref|XP_038891231|]
View 

uncharacterized protein LOC120080586 [Benincasa hispida]

Protein Classification

DUF538 domain-containing protein( domain architecture ID 10516452)

DUF538 domain-containing protein similar to Arabidopsis thaliana At5g01610

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF538 pfam04398
Protein of unknown function, DUF538; This family consists of several plant proteins of unknown ...
 33-139 1.16e-43

Protein of unknown function, DUF538; This family consists of several plant proteins of unknown function.


:

Pssm-ID: 461290  Cd Length: 109  Bit Score: 141.06  E-value: 1.16e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955866675  33 YDHLHLHGLPIGLLPKNITRFSIDSSTGRFQVFLDQPCNAKFEN---EVHYDFNVSGRLSYGQIAELAGISSQELFLWFP 109
Cdd:pfam04398   1 YELLEEYGLPRGLLPKGVTEYGLNEETGFFWVYLKGPCEFEHTEigyLVRYDTEVTGYLSKGKIKKLEGVKVKELFLWVP 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1955866675 110 VKGIRVDlPTSGVIHFDVGVVDKQFSLSLF 139
Cdd:pfam04398  81 VTEISVD-PSGDKITFKVGVLSKSFPVSAF 109
 
Name Accession Description Interval E-value
DUF538 pfam04398
Protein of unknown function, DUF538; This family consists of several plant proteins of unknown ...
 33-139 1.16e-43

Protein of unknown function, DUF538; This family consists of several plant proteins of unknown function.


Pssm-ID: 461290  Cd Length: 109  Bit Score: 141.06  E-value: 1.16e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955866675  33 YDHLHLHGLPIGLLPKNITRFSIDSSTGRFQVFLDQPCNAKFEN---EVHYDFNVSGRLSYGQIAELAGISSQELFLWFP 109
Cdd:pfam04398   1 YELLEEYGLPRGLLPKGVTEYGLNEETGFFWVYLKGPCEFEHTEigyLVRYDTEVTGYLSKGKIKKLEGVKVKELFLWVP 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1955866675 110 VKGIRVDlPTSGVIHFDVGVVDKQFSLSLF 139
Cdd:pfam04398  81 VTEISVD-PSGDKITFKVGVLSKSFPVSAF 109
 
Name Accession Description Interval E-value
DUF538 pfam04398
Protein of unknown function, DUF538; This family consists of several plant proteins of unknown ...
 33-139 1.16e-43

Protein of unknown function, DUF538; This family consists of several plant proteins of unknown function.


Pssm-ID: 461290  Cd Length: 109  Bit Score: 141.06  E-value: 1.16e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955866675  33 YDHLHLHGLPIGLLPKNITRFSIDSSTGRFQVFLDQPCNAKFEN---EVHYDFNVSGRLSYGQIAELAGISSQELFLWFP 109
Cdd:pfam04398   1 YELLEEYGLPRGLLPKGVTEYGLNEETGFFWVYLKGPCEFEHTEigyLVRYDTEVTGYLSKGKIKKLEGVKVKELFLWVP 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1955866675 110 VKGIRVDlPTSGVIHFDVGVVDKQFSLSLF 139
Cdd:pfam04398  81 VTEISVD-PSGDKITFKVGVLSKSFPVSAF 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH