NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1951695661|ref|WP_199244728|]
View 

minor coat protein pIII [Vibrio cholerae]

Protein Classification

CTXphi_pIII-N1 domain-containing protein( domain architecture ID 11245167)

CTXphi_pIII-N1 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CTXphi_pIII-N1 pfam16710
N-terminal N1 domain of Vibrio phage CTXphi pIII; CTXphi_pIII-N1 is the N-terminal domain, N1, ...
 1-111 5.43e-84

N-terminal N1 domain of Vibrio phage CTXphi pIII; CTXphi_pIII-N1 is the N-terminal domain, N1, of the pIII protein of the CTXphi bacteriophage of Vibrio cholerae. CTXphi is a ssDNA Inovirus. pIII is a minor coat protein. This domain interacts directly with the C-terminus of TolA, a periplasmic protein of Vibrio cholerae itself as part of the infection mechanism.


:

Pssm-ID: 293315  Cd Length: 111  Bit Score: 251.12  E-value: 5.43e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1951695661   1 MRYFLLFLTLLFLSPSVTASAINCDPNTTTSHQLLFGFGSPIVQSVLFDGCMLDIEKDDYGFVWSCLSNENGDYCKGLYK 80
Cdd:pfam16710   1 MRYFLLFLTLLFLSPSVTASAINCDPNTTTSHQLLFGFGSPIVQSVLFDGCMLDIEKDDYGFVWSCLSNENGDYCKGLYK 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1951695661  81 PRFSQGVSPNWPMCDLSGASAERCIYPYCPE 111
Cdd:pfam16710  81 PRFSQGVSPNWPMCDLSGASAERCIYPYCPE 111
 
Name Accession Description Interval E-value
CTXphi_pIII-N1 pfam16710
N-terminal N1 domain of Vibrio phage CTXphi pIII; CTXphi_pIII-N1 is the N-terminal domain, N1, ...
 1-111 5.43e-84

N-terminal N1 domain of Vibrio phage CTXphi pIII; CTXphi_pIII-N1 is the N-terminal domain, N1, of the pIII protein of the CTXphi bacteriophage of Vibrio cholerae. CTXphi is a ssDNA Inovirus. pIII is a minor coat protein. This domain interacts directly with the C-terminus of TolA, a periplasmic protein of Vibrio cholerae itself as part of the infection mechanism.


Pssm-ID: 293315  Cd Length: 111  Bit Score: 251.12  E-value: 5.43e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1951695661   1 MRYFLLFLTLLFLSPSVTASAINCDPNTTTSHQLLFGFGSPIVQSVLFDGCMLDIEKDDYGFVWSCLSNENGDYCKGLYK 80
Cdd:pfam16710   1 MRYFLLFLTLLFLSPSVTASAINCDPNTTTSHQLLFGFGSPIVQSVLFDGCMLDIEKDDYGFVWSCLSNENGDYCKGLYK 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1951695661  81 PRFSQGVSPNWPMCDLSGASAERCIYPYCPE 111
Cdd:pfam16710  81 PRFSQGVSPNWPMCDLSGASAERCIYPYCPE 111
 
Name Accession Description Interval E-value
CTXphi_pIII-N1 pfam16710
N-terminal N1 domain of Vibrio phage CTXphi pIII; CTXphi_pIII-N1 is the N-terminal domain, N1, ...
 1-111 5.43e-84

N-terminal N1 domain of Vibrio phage CTXphi pIII; CTXphi_pIII-N1 is the N-terminal domain, N1, of the pIII protein of the CTXphi bacteriophage of Vibrio cholerae. CTXphi is a ssDNA Inovirus. pIII is a minor coat protein. This domain interacts directly with the C-terminus of TolA, a periplasmic protein of Vibrio cholerae itself as part of the infection mechanism.


Pssm-ID: 293315  Cd Length: 111  Bit Score: 251.12  E-value: 5.43e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1951695661   1 MRYFLLFLTLLFLSPSVTASAINCDPNTTTSHQLLFGFGSPIVQSVLFDGCMLDIEKDDYGFVWSCLSNENGDYCKGLYK 80
Cdd:pfam16710   1 MRYFLLFLTLLFLSPSVTASAINCDPNTTTSHQLLFGFGSPIVQSVLFDGCMLDIEKDDYGFVWSCLSNENGDYCKGLYK 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1951695661  81 PRFSQGVSPNWPMCDLSGASAERCIYPYCPE 111
Cdd:pfam16710  81 PRFSQGVSPNWPMCDLSGASAERCIYPYCPE 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH