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Conserved domains on  [gi|195115439|ref|XP_002002264|]
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transmembrane protein 115 [Drosophila mojavensis]

Protein Classification

rhomboid family protein( domain architecture ID 10554071)

rhomboid family protein similar to Homo sapiens transmembrane protein 115 that may play a role in retrograde transport of proteins from the Golgi to the endoplasmic reticulum

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1751 pfam08551
Eukaryotic integral membrane protein (DUF1751); This domain is found in eukaryotic integral ...
 54-157 1.51e-35

Eukaryotic integral membrane protein (DUF1751); This domain is found in eukaryotic integral membrane proteins. Swiss:Q12239, a Saccharomyces cerervisiae protein, has been shown to localize COP II vesicles.


:

Pssm-ID: 369945  Cd Length: 99  Bit Score: 126.59  E-value: 1.51e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195115439   54 PGYLLPngkfWIWTAFTFCFIELHWWEVIVDVVTVGLCGKMLEPLWGQFEMFKFFALSNFGVSLVTTIYYLFYYMVTKNP 133
Cdd:pfam08551   1 PGYTFP----YPWTLLTSGFVEQNVWGVLVSLLTLLLGGKYLERLWGSRELLKFILVVNVITNLLVFLYYLLLYMITGSE 76

                          90       100
                  ....*....|....*....|....
gi 195115439  134 TILFdVHIHGLAGYVAGICVAVRQ 157
Cdd:pfam08551  77 RYLF-VPIHGNYGILAGFLVAFKQ 99
 
Name Accession Description Interval E-value
DUF1751 pfam08551
Eukaryotic integral membrane protein (DUF1751); This domain is found in eukaryotic integral ...
 54-157 1.51e-35

Eukaryotic integral membrane protein (DUF1751); This domain is found in eukaryotic integral membrane proteins. Swiss:Q12239, a Saccharomyces cerervisiae protein, has been shown to localize COP II vesicles.


Pssm-ID: 369945  Cd Length: 99  Bit Score: 126.59  E-value: 1.51e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195115439   54 PGYLLPngkfWIWTAFTFCFIELHWWEVIVDVVTVGLCGKMLEPLWGQFEMFKFFALSNFGVSLVTTIYYLFYYMVTKNP 133
Cdd:pfam08551   1 PGYTFP----YPWTLLTSGFVEQNVWGVLVSLLTLLLGGKYLERLWGSRELLKFILVVNVITNLLVFLYYLLLYMITGSE 76

                          90       100
                  ....*....|....*....|....
gi 195115439  134 TILFdVHIHGLAGYVAGICVAVRQ 157
Cdd:pfam08551  77 RYLF-VPIHGNYGILAGFLVAFKQ 99
 
Name Accession Description Interval E-value
DUF1751 pfam08551
Eukaryotic integral membrane protein (DUF1751); This domain is found in eukaryotic integral ...
 54-157 1.51e-35

Eukaryotic integral membrane protein (DUF1751); This domain is found in eukaryotic integral membrane proteins. Swiss:Q12239, a Saccharomyces cerervisiae protein, has been shown to localize COP II vesicles.


Pssm-ID: 369945  Cd Length: 99  Bit Score: 126.59  E-value: 1.51e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195115439   54 PGYLLPngkfWIWTAFTFCFIELHWWEVIVDVVTVGLCGKMLEPLWGQFEMFKFFALSNFGVSLVTTIYYLFYYMVTKNP 133
Cdd:pfam08551   1 PGYTFP----YPWTLLTSGFVEQNVWGVLVSLLTLLLGGKYLERLWGSRELLKFILVVNVITNLLVFLYYLLLYMITGSE 76

                          90       100
                  ....*....|....*....|....
gi 195115439  134 TILFdVHIHGLAGYVAGICVAVRQ 157
Cdd:pfam08551  77 RYLF-VPIHGNYGILAGFLVAFKQ 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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