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Conserved domains on  [gi|1948761417|ref|WP_198411409|]
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U32 family peptidase C-terminal domain-containing protein, partial [Marinimicrobium alkaliphilum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15452 super family cl36490
putative protease; Provisional
 1-80 9.05e-27

putative protease; Provisional


The actual alignment was detected with superfamily member PRK15452:

Pssm-ID: 237969 [Multi-domain]  Cd Length: 443  Bit Score: 100.69  E-value: 9.05e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1948761417   1 QQWVAEPVAE--QGGWTEVDAKNGFAVGDRLILLTPAGNHTFTPTALRDKTGQPIERAPGSGRRVQLQLPVACEPSTALV 78
Cdd:PRK15452  359 QQFVGEFTGEraGTGLAEVEVKNKFSVGDSLELMTPQGNINFTLERMENRKGEAMEVAPGSGHTVWLPVPADVDLDYALL 438


                  ..
gi 1948761417  79 VR 80
Cdd:PRK15452  439 MR 440
 
Name Accession Description Interval E-value
PRK15452 PRK15452
putative protease; Provisional
 1-80 9.05e-27

putative protease; Provisional


Pssm-ID: 237969 [Multi-domain]  Cd Length: 443  Bit Score: 100.69  E-value: 9.05e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1948761417   1 QQWVAEPVAE--QGGWTEVDAKNGFAVGDRLILLTPAGNHTFTPTALRDKTGQPIERAPGSGRRVQLQLPVACEPSTALV 78
Cdd:PRK15452  359 QQFVGEFTGEraGTGLAEVEVKNKFSVGDSLELMTPQGNINFTLERMENRKGEAMEVAPGSGHTVWLPVPADVDLDYALL 438


                  ..
gi 1948761417  79 VR 80
Cdd:PRK15452  439 MR 440
Peptidase_U32_C pfam16325
Peptidase family U32 C-terminal domain; This domain is found at the C-terminus of many members ...
 10-73 3.82e-16

Peptidase family U32 C-terminal domain; This domain is found at the C-terminus of many members of Peptidase family U32 (pfam01136).


Pssm-ID: 465094  Cd Length: 79  Bit Score: 65.97  E-value: 3.82e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1948761417 10 EQGGWTEVDAKNGFAVGDRLILLTPAG-NHTFTPTALRDKTGQPIERAPGSGRRVQLQLPVACEP 73
Cdd:pfam16325 10 DETGLATIEQRNKFSVGDELEILGPGGdNFTFTVEELYDEDGEPIESAPHPGQIVYIKLDVPVEP 74
 
Name Accession Description Interval E-value
PRK15452 PRK15452
putative protease; Provisional
 1-80 9.05e-27

putative protease; Provisional


Pssm-ID: 237969 [Multi-domain]  Cd Length: 443  Bit Score: 100.69  E-value: 9.05e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1948761417   1 QQWVAEPVAE--QGGWTEVDAKNGFAVGDRLILLTPAGNHTFTPTALRDKTGQPIERAPGSGRRVQLQLPVACEPSTALV 78
Cdd:PRK15452  359 QQFVGEFTGEraGTGLAEVEVKNKFSVGDSLELMTPQGNINFTLERMENRKGEAMEVAPGSGHTVWLPVPADVDLDYALL 438


                  ..
gi 1948761417  79 VR 80
Cdd:PRK15452  439 MR 440
Peptidase_U32_C pfam16325
Peptidase family U32 C-terminal domain; This domain is found at the C-terminus of many members ...
 10-73 3.82e-16

Peptidase family U32 C-terminal domain; This domain is found at the C-terminus of many members of Peptidase family U32 (pfam01136).


Pssm-ID: 465094  Cd Length: 79  Bit Score: 65.97  E-value: 3.82e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1948761417 10 EQGGWTEVDAKNGFAVGDRLILLTPAG-NHTFTPTALRDKTGQPIERAPGSGRRVQLQLPVACEP 73
Cdd:pfam16325 10 DETGLATIEQRNKFSVGDELEILGPGGdNFTFTVEELYDEDGEPIESAPHPGQIVYIKLDVPVEP 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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