NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1946843202|gb|QQA03021|]
View 

NADH dehydrogenase subunit 2, partial (mitochondrion) [Parapholidoptera salmani]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-317 1.10e-78

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 242.81  E-value: 1.10e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSDNPlitdNNIFQTLICS 80
Cdd:MTH00160   20 ISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLF----NNISSMLINS 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  81 ALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNmFISMIIMTSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:MTH00160   96 SLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIGAIGGLNQTSLRKILAYS 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 161 SINHVGWMISAMIIGENIWELYFMIYALLSLSIVMVFNIHHTYHINQNFLTMNHDRITKSCMFLLLLSLGGLPPFLGFFP 240
Cdd:MTH00160  175 SINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLP 254

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1946843202 241 KWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFLFSYTELKMTqLTTPNSLLFLAVLTLTSVSTLGLPFSS 317
Cdd:MTH00160  255 KWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWN-LKKKKNKFSLILNFLSFISLFGLILSS 330
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-317 1.10e-78

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 242.81  E-value: 1.10e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSDNPlitdNNIFQTLICS 80
Cdd:MTH00160   20 ISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLF----NNISSMLINS 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  81 ALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNmFISMIIMTSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:MTH00160   96 SLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIGAIGGLNQTSLRKILAYS 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 161 SINHVGWMISAMIIGENIWELYFMIYALLSLSIVMVFNIHHTYHINQNFLTMNHDRITKSCMFLLLLSLGGLPPFLGFFP 240
Cdd:MTH00160  175 SINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLP 254

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1946843202 241 KWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFLFSYTELKMTqLTTPNSLLFLAVLTLTSVSTLGLPFSS 317
Cdd:MTH00160  255 KWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWN-LKKKKNKFSLILNFLSFISLFGLILSS 330
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 5-264 3.91e-37

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 134.36  E-value: 3.91e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   5 STSWLGVWMGLEINLLSFIPLMT-NTKNTMSTEASLKYFLVQALASAMLLFSIILMY---------TLSDNPLITDNNIF 74
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdELSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  75 QT----LICSALLLKMGAAPFHFWFPATMEGLSWKN-CFILMTWQKIAPLMLLAYV-------IEMNMFISMIIMTSVLI 142
Cdd:pfam00361  81 LLllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIRRSllylpssPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 143 GSLGGLNQSSLRKLMAYSSINHVGWMISAMIIGENI----WELYFMIYALLSLSIVMVFN-----IHHTYHINQNFLTMN 213
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1946843202 214 HDRITKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIMVIMT 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-313 6.16e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 98.65  E-value: 6.16e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   3 VTSTSWLGVWMGLEINLLSFIPL-MTNTKNTMSTEASLKYFLVQALASAMLLFSIILMY----TLSDNPL---ITDNNIF 74
Cdd:COG1007   119 ASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYgatgSLNLAGIaaaLAAGGAN 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  75 QT-------LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---------AYVIEMNMFISMIIMT 138
Cdd:COG1007   199 SPllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLAADWQLLLAVLAVL 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 139 SVLIGSLGGLNQSSLRKLMAYSSINHVGWMISAMIIG-----ENIWeLYFMIYALLSL-SIVMVFNIHHTYHINQNFLTM 212
Cdd:COG1007   279 SMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGtplgvSAAL-FYLLAYLFMNLgAFAVILLLSRKGGEAEEIEDL 357

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 213 N----HDRITKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFLFSYTElkm 288
Cdd:COG1007   358 AglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYFDEPEE--- 434

                         330       340
                  ....*....|....*....|....*
gi 1946843202 289 tQLTTPNSLLFLAVLTLTSVSTLGL 313
Cdd:COG1007   435 -EAPISAPPGLRVALVIAALLVLLL 458
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-274 7.84e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 92.32  E-value: 7.84e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMT-NTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLS-----DNPLITDNNIF 74
Cdd:TIGR01770 117 LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTgslnfEDLLLFLSNGM 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  75 QT---------LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIA------PLMLLAYVIEMNMFISM---II 136
Cdd:TIGR01770 197 LNisllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflRLFLYILFGFSEAWQIFlaiIA 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 137 MTSVLIGSLGGLNQSSLRKLMAYSSINHVGW-MISAMIIGENIWE---LYFMIYALLSL----SIVMVFNIHHTYHINQN 208
Cdd:TIGR01770 277 FLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLgafgVLSLLRSYKDEWIEYIS 356

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1946843202 209 FLT--MNHDRITKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRL 274
Cdd:TIGR01770 357 DFAglFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-317 1.10e-78

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 242.81  E-value: 1.10e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSDNPlitdNNIFQTLICS 80
Cdd:MTH00160   20 ISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLF----NNISSMLINS 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  81 ALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNmFISMIIMTSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:MTH00160   96 SLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIGAIGGLNQTSLRKILAYS 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 161 SINHVGWMISAMIIGENIWELYFMIYALLSLSIVMVFNIHHTYHINQNFLTMNHDRITKSCMFLLLLSLGGLPPFLGFFP 240
Cdd:MTH00160  175 SINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLP 254

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1946843202 241 KWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFLFSYTELKMTqLTTPNSLLFLAVLTLTSVSTLGLPFSS 317
Cdd:MTH00160  255 KWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWN-LKKKKNKFSLILNFLSFISLFGLILSS 330
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-316 4.15e-62

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 200.84  E-value: 4.15e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSDNPLIT--DNNIFQTLI 78
Cdd:MTH00105   19 ITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITklTNPTASTLM 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  79 CSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---AYVIEMNMFISMIIMtSVLIGSLGGLNQSSLRK 155
Cdd:MTH00105   99 TIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPNLLLTLAIL-SILIGGWGGLNQTQLRK 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 156 LMAYSSINHVGWMISAMIIGENIWELYFMIYALLSLSIVMVFNIHHTYHINQNFLTMNHDRITKSCMFLLLLSLGGLPPF 235
Cdd:MTH00105  178 ILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 236 LGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTF---LAFLFSYTELKMT-QLTTPNSLLFLAvlTLTSVSTL 311
Cdd:MTH00105  258 TGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYstsLTMFPSTNNMKMKwQFENTKPMTLLP--TLIILSTM 335


                  ....*
gi 1946843202 312 GLPFS 316
Cdd:MTH00105  336 LLPLT 340
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-311 1.41e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 191.57  E-value: 1.41e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSDNPLITD--NNIFQTLI 78
Cdd:MTH00112   19 ITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQltNPTSCTLL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  79 CSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLaYVIEMNM---FISMIIMTSVLIGSLGGLNQSSLRK 155
Cdd:MTH00112   99 TLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLL-LMTSNSLnptLLLTLAILSTLIGGWGGLNQTQLRK 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 156 LMAYSSINHVGWMISAMIIGENIWELYFMIYALLSLSIVMVFNIHHTYHINQNFLTMNHDRITKSCMFLLLLSLGGLPPF 235
Cdd:MTH00112  178 IMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPL 257

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1946843202 236 LGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFLF---SYTELKMTQLTTPNSLLFLAVLTLTSVSTL 311
Cdd:MTH00112  258 TGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITlppNTTNMMMKWRTKPKKNTLTATLTTLSTLLL 336
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-313 6.77e-58

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 189.76  E-value: 6.77e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSDNPLITD--NNIFQTLI 78
Cdd:MTH00041   19 IVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGplNTLSSIII 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  79 CSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEmNMFISMII---MTSVLIGSLGGLNQSSLRK 155
Cdd:MTH00041   99 TLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISN-LLNSNILIlcgILSVLVGGWGGLNQTQTRK 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 156 LMAYSSINHVGWMISAMIIGENIWELYFMIYALLSLSIVMVFNIHHTYHINQNFLTMNHDRITKSCMFLLLLSLGGLPPF 235
Cdd:MTH00041  178 ILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 236 LGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFLFSYTELKMTQL----TTPNSLLFLAVLTLTSVSTL 311
Cdd:MTH00041  258 TGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFswrnSGNITVYGVILSILSSISIL 337


                  ..
gi 1946843202 312 GL 313
Cdd:MTH00041  338 GL 339
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-318 1.30e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 189.02  E-value: 1.30e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSDNPLITD--NNIFQTLI 78
Cdd:MTH00200   19 LTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEmlGPLSETLI 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  79 CSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEM--NMFISMIIMTSVLIGSLGGLNQSSLRKL 156
Cdd:MTH00200   99 LLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPAlnSNILLLLGLLSVLVGGWGGLNQTQLRKI 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 157 MAYSSINHVGWMISAMIIGENIWELYFMIYALLSLSIVMVFNIHHTYHINQNFLTMNHDRITKSCMFLLLLSLGGLPPFL 236
Cdd:MTH00200  179 LAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLT 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 237 GFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFL-AFLFSYTELKMTQLTTPNSLLFLAVLTLTSVSTLGLPF 315
Cdd:MTH00200  259 GFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLtLLTLSPNQINMMSSWRTKSNSNLLVGLLLLLSILGLPL 338


                  ...
gi 1946843202 316 SST 318
Cdd:MTH00200  339 TPQ 341
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-303 2.06e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 182.78  E-value: 2.06e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSDNPLITdnnifqTLICS 80
Cdd:MTH00144   19 LSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM------SLLLL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  81 ALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNMFISMIIMTSV---LIGSLGGLNQSSLRKLM 157
Cdd:MTH00144   93 GLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVlsaLVGSIGGLNQTQVRALL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 158 AYSSINHVGWMISAMIIGENIWELYFMIYALLSLSIVMVFNIHHTYHInQNFLTMNHDRITKSCMFLLLLSLGGLPPFLG 237
Cdd:MTH00144  173 AYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYKTGLSIISLLLSLGGLPPFLG 251

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1946843202 238 FFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFLFSYTELKMTQLTTPNSLLFLAVL 303
Cdd:MTH00144  252 FCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNL 317
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-277 7.35e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 182.04  E-value: 7.35e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSDNPLITD--NNIFQTLI 78
Cdd:MTH00070   19 ITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNmqTPLPTIML 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  79 CSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYV---IEMNMFISMIImTSVLIGSLGGLNQSSLRK 155
Cdd:MTH00070   99 TIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQIshlLNSNLLIIMGL-LSTLIGGWGGLNQTQLRK 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 156 LMAYSSINHVGWMISAMIIGENIWELYFMIYALLSLSIVMVFNIHHTYHINQNFLTMNHDRITKSCMFLLLLSLGGLPPF 235
Cdd:MTH00070  178 IMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPT 257

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1946843202 236 LGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFL 277
Cdd:MTH00070  258 TGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYA 299
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-313 2.93e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 175.38  E-value: 2.93e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIIL---------MYTLSdNPLITdn 71
Cdd:MTH00135   19 LTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTnawltgqwdIQQMS-HPLPT-- 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  72 nifqTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNMFISMII-MTSVLIGSLGGLNQ 150
Cdd:MTH00135   96 ----TMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLgLTSTLVGGWGGLNQ 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 151 SSLRKLMAYSSINHVGWMISAMIIGENIWELYFMIYALLSLSIVMVFNIHHTYHINQnfLTMNHdriTKSCMFLLLLSLG 230
Cdd:MTH00135  172 TQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINT--LATSW---TKAPALTALTPLI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 231 GL-----PPFLGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFL------FSYT---ELKMTQLTTPns 296
Cdd:MTH00135  247 LLslgglPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLtispntLNGTtpwRLPSTQLTLP-- 324

                         330
                  ....*....|....*..
gi 1946843202 297 llflavLTLTSVSTLGL 313
Cdd:MTH00135  325 ------LAISTTATLML 335
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-304 1.85e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 172.55  E-value: 1.85e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIilMYTLSDNPLITDNNIfqtLICS 80
Cdd:MTH00197   13 FSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGG--SLSFSNLYLSLLSVV---LVIL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  81 ALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNMFISMIIMTSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:MTH00197   88 GLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYS 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 161 SINHVGWMISAMIIGENIWELYFMIYALLSLSIVMVFNIHHTYHINQNFLTMNHDRITKSCMFLLLLSLGGLPPFLGFFP 240
Cdd:MTH00197  168 SIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFL 247

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1946843202 241 KWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFLFSYTELKMTQLTTPNSLLFLAVLT 304
Cdd:MTH00197  248 KWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLM 311
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-300 7.10e-51

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 171.12  E-value: 7.10e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSDnpliTDNNIFQTLICS 80
Cdd:MTH00011   21 MALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPS----LLKNITALMLLV 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  81 ALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNM--FISMIIMTSVLIGSLGGLNQSSLRKLMA 158
Cdd:MTH00011   97 SLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNIlpMMTSMAAMSALAGGLGGMNQTQLRPLLA 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 159 YSSINHVGWMISAMIIGENIWELYFMIYALLSLSIVMVFNIHHTYHINQNFLTMNHDRITKSCMFLLLLSLGGLPPFLGF 238
Cdd:MTH00011  177 YSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGF 256

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1946843202 239 FPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFLFSYTELKMTQLTTPNSLLFL 300
Cdd:MTH00011  257 MPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKIL 318
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 5-264 3.91e-37

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 134.36  E-value: 3.91e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   5 STSWLGVWMGLEINLLSFIPLMT-NTKNTMSTEASLKYFLVQALASAMLLFSIILMY---------TLSDNPLITDNNIF 74
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdELSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  75 QT----LICSALLLKMGAAPFHFWFPATMEGLSWKN-CFILMTWQKIAPLMLLAYV-------IEMNMFISMIIMTSVLI 142
Cdd:pfam00361  81 LLllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIRRSllylpssPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 143 GSLGGLNQSSLRKLMAYSSINHVGWMISAMIIGENI----WELYFMIYALLSLSIVMVFN-----IHHTYHINQNFLTMN 213
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1946843202 214 HDRITKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIMVIMT 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-274 1.40e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 105.87  E-value: 1.40e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLS-FIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSDNPLITDNN------I 73
Cdd:MTH00199  112 LLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINsiltgdV 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  74 FQTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNMFISMIIMTSVLIGSLGGLNQSSL 153
Cdd:MTH00199  192 GKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGALNQTKI 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 154 RKLMAYSSINHVGWMISAMIIGEN-------IWELYFMIYALLSLSIVMVFNIHHTYHINQNFLTMNHDRITKScMFLLL 226
Cdd:MTH00199  272 KRLLAYSGIGHMGFILFGVAIGSFesiqaslIYMIIYVIMSICSFSIILSLKLTKGLIVEVSGLSRKNPVIALT-LALTF 350

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1946843202 227 LSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRL 274
Cdd:MTH00199  351 LSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 3-274 1.23e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.03  E-value: 1.23e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   3 VTSTSWLGVWMGLEINLLSFIPLMTNTKNTM-STEASLKYFLVQALASAMLLFSIILMYTLSDNPLITDNN--------- 72
Cdd:MTH00196   10 ISSSNWLSVYLAIELQTLSLFILIAQNRGSGySAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYINlvlnsgqsf 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  73 ------IFQTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNMFISMIIMTSVLIGSLG 146
Cdd:MTH00196   90 ssvsvpIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSLFVGAIG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 147 GLNQSSLRKLMAYSSINHVGWMISAMIIGE----NIWELYFMIYALLSL---SIVMVFNIHHTYHINQNFLTMNhDRITK 219
Cdd:MTH00196  170 ALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSIcvfSIILALNVYKNLIIEFSGLSRR-LPILA 248

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1946843202 220 SCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRL 274
Cdd:MTH00196  249 ITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-313 6.16e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 98.65  E-value: 6.16e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   3 VTSTSWLGVWMGLEINLLSFIPL-MTNTKNTMSTEASLKYFLVQALASAMLLFSIILMY----TLSDNPL---ITDNNIF 74
Cdd:COG1007   119 ASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYgatgSLNLAGIaaaLAAGGAN 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  75 QT-------LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---------AYVIEMNMFISMIIMT 138
Cdd:COG1007   199 SPllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLAADWQLLLAVLAVL 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 139 SVLIGSLGGLNQSSLRKLMAYSSINHVGWMISAMIIG-----ENIWeLYFMIYALLSL-SIVMVFNIHHTYHINQNFLTM 212
Cdd:COG1007   279 SMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGtplgvSAAL-FYLLAYLFMNLgAFAVILLLSRKGGEAEEIEDL 357

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 213 N----HDRITKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFLFSYTElkm 288
Cdd:COG1007   358 AglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYFDEPEE--- 434

                         330       340
                  ....*....|....*....|....*
gi 1946843202 289 tQLTTPNSLLFLAVLTLTSVSTLGL 313
Cdd:COG1007   435 -EAPISAPPGLRVALVIAALLVLLL 458
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-313 9.99e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.97  E-value: 9.99e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEI-NLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMY----TLSDNPL---ITDNN 72
Cdd:PRK05777  118 VMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYgatgSLSFAGIakaLADGS 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  73 IFQTL-------ICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEM----------NMFISMI 135
Cdd:PRK05777  198 GNSLLllfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVafgglsedwqQVLAIIA 277

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 136 IMtSVLIGSLGGLNQSSLRKLMAYSSINHVGWMISAMIIGENIWE----LYFMIYALLSL----SIVMVFNIHHTYHINQ 207
Cdd:PRK05777  278 IA-SMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsavlFYLLAYLFMTLgafgVISLLRRKGGEAESIS 356

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 208 NFLTMN-HDRITKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFLfsyTEL 286
Cdd:PRK05777  357 DFAGLSkRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLMYF---DEP 433

                         330       340
                  ....*....|....*....|....*..
gi 1946843202 287 KMTQLTTPNSLLFLAVLTLTSVSTLGL 313
Cdd:PRK05777  434 PRDAPVNWPLSAGGAVLSVSALLVLVL 460
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-274 7.84e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 92.32  E-value: 7.84e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   1 IAVTSTSWLGVWMGLEINLLSFIPLMT-NTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLS-----DNPLITDNNIF 74
Cdd:TIGR01770 117 LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTgslnfEDLLLFLSNGM 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  75 QT---------LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIA------PLMLLAYVIEMNMFISM---II 136
Cdd:TIGR01770 197 LNisllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflRLFLYILFGFSEAWQIFlaiIA 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 137 MTSVLIGSLGGLNQSSLRKLMAYSSINHVGW-MISAMIIGENIWE---LYFMIYALLSL----SIVMVFNIHHTYHINQN 208
Cdd:TIGR01770 277 FLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLgafgVLSLLRSYKDEWIEYIS 356

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1946843202 209 FLT--MNHDRITKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRL 274
Cdd:TIGR01770 357 DFAglFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 12-274 2.23e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 73.26  E-value: 2.23e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  12 WMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMY----TLS-----------DNPLITdnnIFQT 76
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYgatgTLNmadlaarlaelDPGLLL---AAFA 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  77 LICSALLLKMGAAPFHFWFPATMEG--------LSWkncfiLMTwqKIAP-----LMLLAYVIEMNMFISMIIMT----S 139
Cdd:COG0651   210 LLLVGFGIKAALFPLHFWLPDAYPAapspvsalLSG-----LLT--KVGVyailrVLTLLFGADPALFLGTLLLVlgllT 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 140 VLIGSLGGLNQSSLRKLMAYSSINHVGWMISAMIIGENI---WELYFMIY-----ALLSLSIVMVFNIHHTYHINQNFLT 211
Cdd:COG0651   283 MLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLglaGALFHLLNhalakALLFLAAGAIERATGTRDLDKLGGL 362

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1946843202 212 MNHDRITKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRL 274
Cdd:COG0651   363 GKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-274 9.57e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 68.73  E-value: 9.57e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   3 VTSTSWLGVWMGLEINLLSFIPLMTNTKNTMST---------EASLKYFLVQALASAMLLFSIILMYTLSDNPLITDNNI 73
Cdd:MTH00198  205 IESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNEGMLGTIL 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  74 FQTL----------------ICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNMFISMIIM 137
Cdd:MTH00198  285 SATLettnielrqgslgylfITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLLSVAI 364

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 138 TSVLIGSLGGLNQSSLRKLMAYSSINHVGWMISAMIIG-----ENIWE--LYFMIYALLSLSIVMV---FNIHHTYHINQ 207
Cdd:MTH00198  365 ISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGtyeslQASWTyaVTYLVSALASFTVICTleeFGTRTPTSRQR 444

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 208 NFLTMNHDRITKSCMFLLL---------------LSLGGLPPFLGFFPKWLIIQTMTDMN-------YQFIIVIMVIMTL 265
Cdd:MTH00198  445 DGSFGNYNLVRRLVDLTILsrgqpyiafslaivfLSLAGIPPLLGFLGKWFILVGSIKIAfssslsiYYLVALFAIICTC 524


                  ....*....
gi 1946843202 266 ITLFYYLRL 274
Cdd:MTH00198  525 ISAFYYIRI 533
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 15-313 7.26e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 65.67  E-value: 7.26e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  15 LEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLS---DNPLITDNNIFQT-------LICSALLL 84
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTgtlNMADLAGALAENPtvvtafgFVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  85 KMGAAPFHFWFPATM-EGLSWKNCFILMTWQKIAPLML---LAYVIEMNMFISM----IIMT----SVLIGSLGGLNQSS 152
Cdd:PRK08375  215 KAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAVYALiriYFTVFGGDFRFALglgwLLAVlallSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 153 LRKLMAYSSINHVGWMISAMIIGENIWELYFMIYAL--------LSLSIVMVFNIHHTYHINQNFLTMNHDRITKSCMFL 224
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalmkgaLFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 225 LLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFlFSYTELKMTQLTTPNSLLFLAVLT 304
Cdd:PRK08375  375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAF-FGPPPPGSEAPKQEAPLGMLAPSL 453


                  ....*....
gi 1946843202 305 LTSVSTLGL 313
Cdd:PRK08375  454 ALALLSLLL 462
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 36-280 7.82e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 62.81  E-value: 7.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  36 EASLKYFLVQALASAMLLFSIILMY-------------TLSDNPLITDnNIFQTLICSALLLKMGAAPFHFWFP-ATMEG 101
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALLYgqygtlnmaylavKMSENPTVVA-KIALALFIAGLAMKSGAVPVHMWLPdAYPAA 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 102 LSWKNCFILMTWQ----KIAPLMLLAYVIEMNM-----FISMIIMTSVLIGSLGGLNQSSLRKLMAYSSINHVGWMISAM 172
Cdd:PRK08376  251 PSSISAMLLVIKQaglyALARVLFSIYGPAINLatvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGL 330

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 173 IIGENIWEL--------------------YFMIYALLSLSIVMVFNIHHTYHINQNFLTMNHDRITKSCMFLLLLSLGGL 232
Cdd:PRK08376  331 GVGLAALGDpamasygeialaggiyhivnHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGL 410

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1946843202 233 PPFLGFFPKWLIIQTMTDMNyQFIIVIMVIMTLITLFYYLRLTFLAFL 280
Cdd:PRK08376  411 PPFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHTAFF 457
ndhB CHL00049
NADH dehydrogenase subunit 2
 30-279 1.62e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 52.31  E-value: 1.62e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  30 KNTMSTEASLKYFLVQALASAMLLFSIILMYTLSDNPL--------ITDNNIFQTLICSALLL--------KMGAAPFHF 93
Cdd:CHL00049  156 KDVRSNEATMKYLLMGGASSSILVYGFSWLYGLSGGEIelqeivngLINTQMYNSPGISIALIfitvgigfKLSLAPFHQ 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  94 WFPATMEGLSWKNCFILMTWQKIAPLMLLAYVI---------EMNMFISMIIMTSVLIGSLGGLNQSSLRKLMAYSSINH 164
Cdd:CHL00049  236 WTPDVYEGSPTPVVAFLSVTSKVAASALATRIFdipfyfssnEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQ 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 165 VGWMISAMIIGENIWE-----LYFMIYALLSL---SIVMVFNIHH-TYHINQNFLTMNHDRITKSCMFLLLLSLGGLPPF 235
Cdd:CHL00049  316 IGYVIIGIIVGDSNDGyasmiTYMLFYIFMNLgtfACIVLFGLRTgTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPL 395

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1946843202 236 LGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAF 279
Cdd:CHL00049  396 AGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKIIKLLM 439
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 36-280 3.12e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 51.51  E-value: 3.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  36 EASLKYFLVQALASAMLLFSIILMY------------------------TLSDNPLITdNNIFQTLICSALLLKMGAAPF 91
Cdd:PRK12667  164 EAAIKYALIGAVGTTLYFLALAFLYatfgtlnmadlsakirglsfpltgGLAGNPPLA-LGVALALALWAFTIKAAIFPN 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  92 HFWFP-----------ATMEGLSWK---NCFILMTWQKIAPLMLLAYVIEMNMFISMIIMT-SVLIGSLGGLNQSSLRKL 156
Cdd:PRK12667  243 HFWLPdahpaapspvsAMLSGLVVNvgaYAIIRFLYTIFGISPSLIDFRAALSPILIILGAvSAIIGALMMVVQKDVKRL 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 157 MAYSSINHVGWMISAMIIGENIWELYFMIY--------ALLSLSIVMVFNIHHTYHINQNFLTMNHDRITKSCMFLLLLS 228
Cdd:PRK12667  323 LAYSTISHMGYIFMGIGIGTQLGLAAALFHiinhaiakSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALS 402

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1946843202 229 LGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFL 280
Cdd:PRK12667  403 LVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFF 454
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
34-273 5.94e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 50.82  E-value: 5.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  34 STEASLKYFLVQALASAMLLFSIILMYTLSDN--------PLITDNNIFQTLICSALLL-----KMGAAPFHFWFPATME 100
Cdd:PRK02504  159 SNEAALKYLLIGAASSAIFLYGSSLLYGLSGGstqlsaiaLALITSPSLGLALALVFVIagiafKISAVPFHQWTPDVYE 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 101 GLSWKNCFILMTWQKIAPLMLL---------AYVIEMNMFISMIIMTSVLIGSLGGLNQSSLRKLMAYSSINHVGWMISA 171
Cdd:PRK02504  239 GSPTPVVAFLSVGSKAAGFALAirllvtafpSFDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIG 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 172 MIIGEN----IWELYFMIYALLSL---SIVMVFNIHH-TYHINQNFLTMNHDRITKSCMFLLLLSLGGLPPFLGFFPK-W 242
Cdd:PRK02504  319 LVAGTEagyaSMVFYLLAYLFMNLgafACVILFSLRTgTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKiY 398

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1946843202 243 LIIQTMTDMNYQFIIVIMViMTLITLFYYLR 273
Cdd:PRK02504  399 LFWAGWQAGLYLLVLVGLV-TSVISIYYYIR 428
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 34-280 1.43e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.22  E-value: 1.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  34 STEASLKYFLVQALASAMLLFSIILMYT----------LSDNPLITDNNIFqTLICsaLLLKMGAA------PFHFWFPA 97
Cdd:COG1009   160 ARRAARKAFLVTRVGDLGLLLGILLLGAiagtlnfselLAAAPTILSSPLL-TLIL--LLLLLGAFgksaqfPLHFWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  98 TME-----------------GLswkncFILMtwqKIAPLMLLAYVIemNMFISMIIMTSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:COG1009   237 AMEgptpvsallhaatmvkaGV-----YLLA---RLSPLFALSPVW--LTVVAIIGAITALFAALIALAQTDIKRVLAYS 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 161 SINHVGWMISAMIIGENIWELYFMIY-----ALLSLSIVMVfnIHHTyhINQNFLTMN----HDRITKSCMFLLLLSLGG 231
Cdd:COG1009   307 TVSQLGYMFLALGVGAYVAALFHLLThaffkALLFLGAGSV--IHAT--GTRDIRKMGglrkKMPITAITFLIGALSLAG 382

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1946843202 232 LPPFLGFFPKWLIIQTM--TDMNYQFIIVIMVIMTLITLFYYLRLTFLAFL 280
Cdd:COG1009   383 IPPFAGFFSKEAILEAAleAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFF 433
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 37-166 4.12e-04

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 41.61  E-value: 4.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  37 ASLKYFLVQALASAMLLFSIILMYTLSDN-----PLITDNNI---FQTLICSALLL----KMGAAPFHFWFPATMEGlsw 104
Cdd:COG1008   162 AAIKFFLYTLAGSLLMLVAILALYFLAGAltfdiAELAAAPLpltAQLLLFLAFFIafavKVPMFPFHTWLPDAHVE--- 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 105 kncfilmtwqkiAPL---MLLAYV-----------IEMNMF------ISMIIMT----SVLIGSLGGLNQSSLRKLMAYS 160
Cdd:COG1008   239 ------------APTagsVLLAGVllkmggygllrFALPLFpeasayFAPLLAAlgviGIIYGALVALAQTDLKRLIAYS 306


                  ....*.
gi 1946843202 161 SINHVG 166
Cdd:COG1008   307 SVSHMG 312
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 82-287 4.32e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 41.39  E-value: 4.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  82 LLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNMFISMIIMTSVLIGSLggLNQSSLRKLMAYSS 161
Cdd:MTH00091   67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQM--FLLKSYKNLLILSS 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 162 INHVGWMISAMIIGENIWELYFMIYALLSLSIVMVFNIHHTYHINQnfltmnhdritkscmFLLLLSLGGLPPFLGFFPK 241
Cdd:MTH00091  145 TESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVS---------------WETLLVFMNLPFSVTFFVK 209

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1946843202 242 WLIIQTMTDMNYQFIIVIMVIMTLITLFYYLRLTFLAFLFSYTELK 287
Cdd:MTH00091  210 IFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFK 255
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-312 1.11e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 40.57  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202   5 STSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLF-SIILMYTLSDNPLITDNNIFQT------- 76
Cdd:PRK06589  135 SSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLpAVILIYTKTGNLDFVSGGLFSKnqsiill 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  77 LICSALLLKMGAAPFHFWFPATM-----------------EGLSWKNCFILMTWQkiapLMLLAYVIEMNMFISMIIMTS 139
Cdd:PRK06589  215 LMFIYGIAKTAIFPVHSWLPAAMvahypvsallhavivvkTGLFCIYKILLYIFG----LSYLQRIFAEFNWLIFIPIVS 290

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 140 VLIGSLGGLNQSSLRKLMAYSSINHVGW------MISAMIIGENIWELYFMIYALLSLSIVM--VFNIHHTYHINQNFLT 211
Cdd:PRK06589  291 IFYSSLKALKTDNIKKILAYSTISQLSLallsafILTPKALGAAILHLVSHSFAKICLFYSMgsIYSLKKEDQVDKLHGT 370

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 212 MNHDRITKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIM----VIMTLITLFYYLRLTFLAFLFSYTELK 287
Cdd:PRK06589  371 SKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVmlvvIASSILSALYLLKILSSIYKPSLSENS 450

                         330       340
                  ....*....|....*....|....*
gi 1946843202 288 MTQLTTPnSLLFLAVLTLTSVSTLG 312
Cdd:PRK06589  451 FITKSLP-YLMQISVITCCCALTLF 474
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 124-312 1.32e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 40.40  E-value: 1.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 124 YVIEMNMFISMIIMTSV---LIGSLGGLNQSSLRKLMAYSSINHVGWMISAMIIGENIWELYFMIYALL--SLSIVMVFN 198
Cdd:MTH00209  231 SLFSSPFFSMSLLLLGSlttLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALfkALLFICAGN 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 199 IHHTYHINQNFLTM----NHDRITKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIM-VIMTLITLFYYLR 273
Cdd:MTH00209  311 IIHSHGHSQDIRMVgnlwYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILmFLSTSLTAAYSMR 390

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1946843202 274 LTFLAFLFSYTELKMTQLTTPNSLLFLAVLTLTSVSTLG 312
Cdd:MTH00209  391 LSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITG 429
PRK12650 PRK12650
DUF4040 family protein;
77-175 1.36e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.41  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  77 LICSALLLKMGAAPFHFWFPATMEGLSWKNCFI---LMTWQKIAPLMLLAYVIEMNMF--ISMII--MTSVLIGSLGGLN 149
Cdd:PRK12650  213 LIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLhaaAVVKAGIYLLLRFSPVFHDVAVwnWLLIIvgMITALMGAVFAVQ 292

                          90       100
                  ....*....|....*....|....*.
gi 1946843202 150 QSSLRKLMAYSSINHVGWMISAMIIG 175
Cdd:PRK12650  293 KTDLKKLTAYSTVSQLGWIVATIGVG 318
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 76-280 1.60e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 40.06  E-value: 1.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  76 TLICSALLL----KMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNMFISMIIMTSVLIGSLG----- 146
Cdd:MTH00020  210 TLICLFLFIgavgKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVTIVGSLTvffaa 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 147 --GLNQSSLRKLMAYSSINHVGWMISAMIIGENIWELYFMI-----YALLSLSIVMVFnihHTYHINQNFLTM----NHD 215
Cdd:MTH00020  290 tvGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMnhaffKALLFLSAGSVI---HALSDEQDMRKMggliSFL 366

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1946843202 216 RITKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNY-QFIIVIMVIMTLITLFYYLRLTFLAFL 280
Cdd:MTH00020  367 PLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYlIFAYWLGCFSALLTAFYSIRLIYLTFL 432
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 129-314 3.69e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 38.98  E-value: 3.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 129 NMFISMIIMTSVLIGSLGGLNQSSLRKLMAYSSINHVGWMISAMIIGENIWELYFMIYALL--SLSIVMVFNIHHTYHIN 206
Cdd:MTH00207  243 NPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALfkALLFVCAGSLIHSHHHS 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202 207 QNFLTM----NHDRITKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIVIMVIM-TLITLFYYLRLTFLAFL- 280
Cdd:MTH00207  323 QDLRTMgnltNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLaTALTAAYSTRFTLAVLWs 402

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1946843202 281 ------FSYTELKMTQLTTPNSLLFLAVLTLTSVSTLGLP 314
Cdd:MTH00207  403 pnssspYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLP 442
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 19-166 9.70e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 37.79  E-value: 9.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  19 LLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLS---DNPLITDNNIFQTLICSALLL----KMGAAPF 91
Cdd:PRK08667  145 LSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTgsfELSPLGASAGILSLVFLLLFLgfgiKAGIIPF 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843202  92 HFWFPATMEGlSWKNCFILMT--WQKIAPLMLLAYVIEM-------NMFISMIIMTSVLIGSLGGLNQSSLRKLMAYSSI 162
Cdd:PRK08667  225 HKWLPYAHPA-SPSNVSALMSgvMLKVAVYGLVRFLMDVlspelwwGVLILLAGSISALLGVIYALKEHDLKGLLAYSSI 303


                  ....
gi 1946843202 163 NHVG 166
Cdd:PRK08667  304 ENIG 307
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH