|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-317 |
3.10e-76 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 236.64 E-value: 3.10e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 1 IATTATSWLGVWMGLEINLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFKspltMGTNIFQILICS 80
Cdd:MTH00160 20 ISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM----LFNNISSMLINS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 81 TLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNiFISMIIVVSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:MTH00160 96 SLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIGAIGGLNQTSLRKILAYS 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 161 SINHIGWMISAMVIGENIWELYFMIYTLLSLSIILIFSTHHIYHINQNFLMMPHDRVTKSCMFLLLLSLGGLPPFLGFFP 240
Cdd:MTH00160 175 SINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLP 254
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1946843174 241 KWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFLFSYTELKMIHPTPLNSLpFMTTLILTGLSTLGLPLSS 317
Cdd:MTH00160 255 KWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKF-SLILNFLSFISLFGLILSS 330
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
5-264 |
5.03e-37 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 133.98 E-value: 5.03e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 5 ATSWLGVWMGLEINLLSFIPLMT-NYKNIMSTEASLKYFLVQALASAMLLFSIILMY-------------MLFKSPLTMG 70
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdelskALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 71 TNIFQILICSTLMLKMGAAPFHFWFPATMEGLSWKN-CFILMTWQKIAPLMLLAYV-------IEMNIFISMIIVVSVLI 142
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIRRSllylpssPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 143 GSLGGLNQSSLRKLMAYSSINHIGWMISAMVIGENI----WELYFMIYTLLSLSIILIFS-----THHIYHINQNFLMMP 213
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1946843174 214 HDRVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVMT 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
5-313 |
1.16e-22 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 97.49 E-value: 1.16e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 5 ATSWLGVWMGLEINLLSFIPL-MTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYML--------FKSPLTMGTNIFQ 75
Cdd:COG1007 121 ANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGAtgslnlagIAAALAAGGANSP 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 76 ILICSTLML------KMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---------AYVIEMNIFISMIIVVSV 140
Cdd:COG1007 201 LLLLGLVLVlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLAADWQLLLAVLAVLSM 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 141 LIGSLGGLNQSSLRKLMAYSSINHIGWMISAMVIGENIWE----LYFMIYTLLSL---SIILIFS-----THHIYHINQN 208
Cdd:COG1007 281 TVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaalFYLLAYLFMNLgafAVILLLSrkggeAEEIEDLAGL 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 209 FLMMPhdrVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFLFSYTElkm 288
Cdd:COG1007 361 ARRSP---LLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYFDEPEE--- 434
|
330 340
....*....|....*....|....*
gi 1946843174 289 iHPTPLNSLPFMTTLILTGLSTLGL 313
Cdd:COG1007 435 -EAPISAPPGLRVALVIAALLVLLL 458
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
9-274 |
9.76e-19 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 86.16 E-value: 9.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 9 LGVWMGLEINLLSFIPLMT-NYKNIMSTEASLKYFLVQALASAMLLFSIILMY-----------MLFKSPLTMGTNIFQ- 75
Cdd:TIGR01770 125 LSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYgftgslnfedlLLFLSNGMLNISLLLl 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 76 --ILICSTLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIA---------PLMLLAYVIEMNIFISMIIVVSVLIGS 144
Cdd:TIGR01770 205 giVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlfLYILFGFSEAWQIFLAIIAFLSMLIGN 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 145 LGGLNQSSLRKLMAYSSINHIGW-MISAMVIGENIWE---LYFMIYTLLSLSIILIFST------HHIYHINQNFLMMPH 214
Cdd:TIGR01770 285 FGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLlrsykdEWIEYISDFAGLFKT 364
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 215 DRVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRL 274
Cdd:TIGR01770 365 NPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-317 |
3.10e-76 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 236.64 E-value: 3.10e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 1 IATTATSWLGVWMGLEINLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFKspltMGTNIFQILICS 80
Cdd:MTH00160 20 ISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM----LFNNISSMLINS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 81 TLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNiFISMIIVVSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:MTH00160 96 SLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIGAIGGLNQTSLRKILAYS 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 161 SINHIGWMISAMVIGENIWELYFMIYTLLSLSIILIFSTHHIYHINQNFLMMPHDRVTKSCMFLLLLSLGGLPPFLGFFP 240
Cdd:MTH00160 175 SINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLP 254
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1946843174 241 KWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFLFSYTELKMIHPTPLNSLpFMTTLILTGLSTLGLPLSS 317
Cdd:MTH00160 255 KWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKF-SLILNFLSFISLFGLILSS 330
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-316 |
1.44e-55 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 183.89 E-value: 1.44e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 1 IATTATSWLGVWMGLEINLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFK--SPLTMGTNIFQILI 78
Cdd:MTH00105 19 ITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGqwTITKLTNPTASTLM 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 79 CSTLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---AYVIEMNIFISMIIvVSVLIGSLGGLNQSSLRK 155
Cdd:MTH00105 99 TIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPNLLLTLAI-LSILIGGWGGLNQTQLRK 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 156 LMAYSSINHIGWMISAMVIGENIWELYFMIYTLLSLSIILIFSTHHIYHINQNFLMMPHDRVTKSCMFLLLLSLGGLPPF 235
Cdd:MTH00105 178 ILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPL 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 236 LGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTF---LAFLFSYTELKMI-HPTPLNSLPFMTTLILtgLSTL 311
Cdd:MTH00105 258 TGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYstsLTMFPSTNNMKMKwQFENTKPMTLLPTLII--LSTM 335
|
....*
gi 1946843174 312 GLPLS 316
Cdd:MTH00105 336 LLPLT 340
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-316 |
5.24e-55 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 182.33 E-value: 5.24e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 1 IATTATSWLGVWMGLEINLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFKS--PLTMGTNIFQILI 78
Cdd:MTH00112 19 ITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQwdITQLTNPTSCTLL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 79 CSTLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLaYVIEMNI---FISMIIVVSVLIGSLGGLNQSSLRK 155
Cdd:MTH00112 99 TLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLL-LMTSNSLnptLLLTLAILSTLIGGWGGLNQTQLRK 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 156 LMAYSSINHIGWMISAMVIGENIWELYFMIYTLLSLSIILIFSTHHIYHINQNFLMMPHDRVTKSCMFLLLLSLGGLPPF 235
Cdd:MTH00112 178 IMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPL 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 236 LGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFLF---SYTELKMIHPTPLNSLPFMTTLILtgLSTLG 312
Cdd:MTH00112 258 TGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITlppNTTNMMMKWRTKPKKNTLTATLTT--LSTLL 335
|
....
gi 1946843174 313 LPLS 316
Cdd:MTH00112 336 LPLS 339
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
8-318 |
2.28e-54 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 180.89 E-value: 2.28e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 8 WLGVWMGLEINLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFK--SPLTMGTNIFQILICSTLMLK 85
Cdd:MTH00070 26 WFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGewTIMNMQTPLPTIMLTIALMMK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 86 MGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYV---IEMNIFISMIIvVSVLIGSLGGLNQSSLRKLMAYSSI 162
Cdd:MTH00070 106 LGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQIshlLNSNLLIIMGL-LSTLIGGWGGLNQTQLRKIMAYSSI 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 163 NHIGWMISAMVIGENIWELYFMIYTLLSLSIILIFSTHHIYHINQNFLMMPHDRVTKSCMFLLLLSLGGLPPFLGFFPKW 242
Cdd:MTH00070 185 AHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKW 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 243 LIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFLfsytelkMIHPTPLNSL--------PFMTTLILTGLSTLGLP 314
Cdd:MTH00070 265 LILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSL-------TTSPNTSNSKlywrfknkTNNLLSLTIILSLMLLP 337
|
....
gi 1946843174 315 LSST 318
Cdd:MTH00070 338 ITPT 341
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-289 |
8.37e-53 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 176.66 E-value: 8.37e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 1 IATTATSWLGVWMGLEINLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFKSPLTMGT--NIFQILI 78
Cdd:MTH00041 19 IVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPlnTLSSIII 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 79 CSTLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEmNIFISMIIV---VSVLIGSLGGLNQSSLRK 155
Cdd:MTH00041 99 TLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISN-LLNSNILILcgiLSVLVGGWGGLNQTQTRK 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 156 LMAYSSINHIGWMISAMVIGENIWELYFMIYTLLSLSIILIFSTHHIYHINQNFLMMPHDRVTKSCMFLLLLSLGGLPPF 235
Cdd:MTH00041 178 ILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPL 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1946843174 236 LGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFLFSYTELKMI 289
Cdd:MTH00041 258 TGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSIS 311
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
4-287 |
1.32e-52 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 175.46 E-value: 1.32e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 4 TATSWLGVWMGLEINLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFKSPLTMgtnifqILICSTLM 83
Cdd:MTH00144 22 SSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM------SLLLLGLC 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 84 LKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFISMIIVVSV---LIGSLGGLNQSSLRKLMAYS 160
Cdd:MTH00144 96 LKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVlsaLVGSIGGLNQTQVRALLAYS 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 161 SINHIGWMISAMVIGENIWELYFMIYTLLSLSIILIFSTHHIYHINQNFLMMPHDRVTKSCMFlLLLSLGGLPPFLGFFP 240
Cdd:MTH00144 176 SISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIIS-LLLSLGGLPPFLGFCS 254
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1946843174 241 KWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFLFSYTELK 287
Cdd:MTH00144 255 KLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKK 301
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-318 |
1.02e-51 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 174.00 E-value: 1.02e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 1 IATTATSWLGVWMGLEINLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFK--SPLTMGTNIFQILI 78
Cdd:MTH00200 19 LTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGqwGISEMLGPLSETLI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 79 CSTLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEM--NIFISMIIVVSVLIGSLGGLNQSSLRKL 156
Cdd:MTH00200 99 LLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPAlnSNILLLLGLLSVLVGGWGGLNQTQLRKI 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 157 MAYSSINHIGWMISAMVIGENIWELYFMIYTLLSLSIILIFSTHHIYHINQNFLMMPHDRVTKSCMFLLLLSLGGLPPFL 236
Cdd:MTH00200 179 LAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLT 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 237 GFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFL-AFLFSYTELKMIHPTPLNSLPFMTTLILTGLSTLGLPL 315
Cdd:MTH00200 259 GFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLtLLTLSPNQINMMSSWRTKSNSNLLVGLLLLLSILGLPL 338
|
...
gi 1946843174 316 SST 318
Cdd:MTH00200 339 TPQ 341
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-284 |
4.53e-49 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 166.49 E-value: 4.53e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 1 IATTATSWLGVWMGLEINLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFksplTMGTNIFQILICS 80
Cdd:MTH00011 21 MALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFP----SLLKNITALMLLV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 81 TLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNI--FISMIIVVSVLIGSLGGLNQSSLRKLMA 158
Cdd:MTH00011 97 SLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNIlpMMTSMAAMSALAGGLGGMNQTQLRPLLA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 159 YSSINHIGWMISAMVIGENIWELYFMIYTLLSLSIILIFSTHHIYHINQNFLMMPHDRVTKSCMFLLLLSLGGLPPFLGF 238
Cdd:MTH00011 177 YSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGF 256
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1946843174 239 FPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFLFSYT 284
Cdd:MTH00011 257 MPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPT 302
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
1-283 |
2.96e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 164.07 E-value: 2.96e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 1 IATTATSWLGVWMGLEINLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFKSPLtmgtnIFQILICS 80
Cdd:MTH00197 13 FSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSL-----LSVVLVIL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 81 TLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFISMIIVVSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:MTH00197 88 GLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYS 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 161 SINHIGWMISAMVIGENIWELYFMIYTLLSLSIILIFSTHHIYHINQNFLMMPHDRVTKSCMFLLLLSLGGLPPFLGFFP 240
Cdd:MTH00197 168 SIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFL 247
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1946843174 241 KWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFLFSY 283
Cdd:MTH00197 248 KWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSN 290
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
3-276 |
4.59e-47 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 161.51 E-value: 4.59e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 3 TTATS-WLGVWMGLEINLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFS------------IILMymlfKSPLTM 69
Cdd:MTH00135 20 TFASShWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFAsttnawltgqwdIQQM----SHPLPT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 70 gtnifqILICSTLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFISMII-VVSVLIGSLGGL 148
Cdd:MTH00135 96 ------TMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLgLTSTLVGGWGGL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 149 NQSSLRKLMAYSSINHIGWMISAMVIGENIWELYFMIYTLLSLSIILIFSTHHIYHINQNFLMMPHDRVTKSCMFLLLLS 228
Cdd:MTH00135 170 NQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLS 249
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1946843174 229 LGGLPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTF 276
Cdd:MTH00135 250 LGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSY 297
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
5-264 |
5.03e-37 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 133.98 E-value: 5.03e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 5 ATSWLGVWMGLEINLLSFIPLMT-NYKNIMSTEASLKYFLVQALASAMLLFSIILMY-------------MLFKSPLTMG 70
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdelskALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 71 TNIFQILICSTLMLKMGAAPFHFWFPATMEGLSWKN-CFILMTWQKIAPLMLLAYV-------IEMNIFISMIIVVSVLI 142
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIRRSllylpssPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 143 GSLGGLNQSSLRKLMAYSSINHIGWMISAMVIGENI----WELYFMIYTLLSLSIILIFS-----THHIYHINQNFLMMP 213
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1946843174 214 HDRVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVMT 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
5-274 |
4.94e-24 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 100.49 E-value: 4.94e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 5 ATSWLGVWMGLEINLLSFIPLMTNYKN-IMSTEASLKYFLVQALASAMLLFSIILMY------------MLFKSPLTM-- 69
Cdd:MTH00196 12 SSNWLSVYLAIELQTLSLFILIAQNRGsGYSAEAGLKYFVLGALSSGLFLFGCALLCgttgglhlsyinLVLNSGQSFss 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 70 -GTNIFQILICSTLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFISMIIVVSVLIGSLGGL 148
Cdd:MTH00196 92 vSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSLFVGAIGAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 149 NQSSLRKLMAYSSINHIGWMISAMVIGE----NIWELYFMIYTLLSL---SIILIFSTHHIYHINQNFLMMpHDRVTKSC 221
Cdd:MTH00196 172 NQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSIcvfSIILALNVYKNLIIEFSGLSR-RLPILAIT 250
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1946843174 222 MFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRL 274
Cdd:MTH00196 251 LALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
5-313 |
4.76e-23 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 98.74 E-value: 4.76e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 5 ATSWLGVWMGLEI-NLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMY----------MLFKSPLTMGTNI 73
Cdd:PRK05777 122 ANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYgatgslsfagIAKALADGSGNSL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 74 FQI----LICSTLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---------AYVIEMNIFISMIIVVSV 140
Cdd:PRK05777 202 LLLfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgGLSEDWQQVLAIIAIASM 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 141 LIGSLGGLNQSSLRKLMAYSSINHIGWMISAMVIGENIWE----LYFMIYTLLSL---SIILI-----FSTHHIYHINQn 208
Cdd:PRK05777 282 LVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsavlFYLLAYLFMTLgafGVISLlrrkgGEAESISDFAG- 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 209 flMMPHDRVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFLfsyTELKM 288
Cdd:PRK05777 361 --LSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLMYF---DEPPR 435
|
330 340
....*....|....*....|....*
gi 1946843174 289 IHPTPLNSLPFMTTLILTGLSTLGL 313
Cdd:PRK05777 436 DAPVNWPLSAGGAVLSVSALLVLVL 460
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
5-313 |
1.16e-22 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 97.49 E-value: 1.16e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 5 ATSWLGVWMGLEINLLSFIPL-MTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYML--------FKSPLTMGTNIFQ 75
Cdd:COG1007 121 ANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGAtgslnlagIAAALAAGGANSP 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 76 ILICSTLML------KMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---------AYVIEMNIFISMIIVVSV 140
Cdd:COG1007 201 LLLLGLVLVlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLAADWQLLLAVLAVLSM 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 141 LIGSLGGLNQSSLRKLMAYSSINHIGWMISAMVIGENIWE----LYFMIYTLLSL---SIILIFS-----THHIYHINQN 208
Cdd:COG1007 281 TVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaalFYLLAYLFMNLgafAVILLLSrkggeAEEIEDLAGL 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 209 FLMMPhdrVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFLFSYTElkm 288
Cdd:COG1007 361 ARRSP---LLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYFDEPEE--- 434
|
330 340
....*....|....*....|....*
gi 1946843174 289 iHPTPLNSLPFMTTLILTGLSTLGL 313
Cdd:COG1007 435 -EAPISAPPGLRVALVIAALLVLLL 458
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
8-274 |
2.71e-22 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 96.62 E-value: 2.71e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 8 WLGVWMGLEINLLS-FIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFKSPLTMGTN------IFQILICS 80
Cdd:MTH00199 119 WLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINsiltgdVGKILITI 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 81 TLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFISMIIVVSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:MTH00199 199 SLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGALNQTKIKRLLAYS 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 161 SINHIGWMISAMVIGEN-------IWELYFMIYTLLSLSIILIFSTHHIYHINQNFLMMPHDrVTKSCMFLLLLSLGGLP 233
Cdd:MTH00199 279 GIGHMGFILFGVAIGSFesiqaslIYMIIYVIMSICSFSIILSLKLTKGLIVEVSGLSRKNP-VIALTLALTFLSIAGIP 357
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1946843174 234 PFLGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRL 274
Cdd:MTH00199 358 PLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
9-274 |
9.76e-19 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 86.16 E-value: 9.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 9 LGVWMGLEINLLSFIPLMT-NYKNIMSTEASLKYFLVQALASAMLLFSIILMY-----------MLFKSPLTMGTNIFQ- 75
Cdd:TIGR01770 125 LSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYgftgslnfedlLLFLSNGMLNISLLLl 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 76 --ILICSTLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIA---------PLMLLAYVIEMNIFISMIIVVSVLIGS 144
Cdd:TIGR01770 205 giVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlfLYILFGFSEAWQIFLAIIAFLSMLIGN 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 145 LGGLNQSSLRKLMAYSSINHIGW-MISAMVIGENIWE---LYFMIYTLLSLSIILIFST------HHIYHINQNFLMMPH 214
Cdd:TIGR01770 285 FGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLlrsykdEWIEYISDFAGLFKT 364
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 215 DRVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRL 274
Cdd:TIGR01770 365 NPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
12-274 |
1.32e-13 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 70.95 E-value: 1.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 12 WMGLEINLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFKSpLTMG-------------TNIFQILI 78
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGT-LNMAdlaarlaeldpglLLAAFALL 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 79 CSTLMLKMGAAPFHFWFPATMEG--------LSWkncfiLMTwqKIAP-----LMLLAYVIEMNIFISMIIVV----SVL 141
Cdd:COG0651 212 LVGFGIKAALFPLHFWLPDAYPAapspvsalLSG-----LLT--KVGVyailrVLTLLFGADPALFLGTLLLVlgllTML 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 142 IGSLGGLNQSSLRKLMAYSSINHIGWMISAMVIGENI---WELYFMIY-----TLLSLSIILIFSTHHIYHINQNFLMMP 213
Cdd:COG0651 285 VGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLglaGALFHLLNhalakALLFLAAGAIERATGTRDLDKLGGLGK 364
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1946843174 214 HDRVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRL 274
Cdd:COG0651 365 RMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
5-295 |
1.09e-10 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 62.18 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 5 ATSWLGVWMGLEINLLSFIPL---------MTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFKSPLTMGT---- 71
Cdd:MTH00198 207 SANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFGCALYFGFTGNEGMLGTilsa 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 72 ------------NIFQILICSTLMLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFISMIIVVS 139
Cdd:MTH00198 287 tlettnielrqgSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLLSVAIIS 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 140 VLIGSLGGLNQSSLRKLMAYSSINHIGWMISAMVIG-----ENIWE--LYFMIYTLLSLSIILI---FSTHHIYHINQNF 209
Cdd:MTH00198 367 LVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGtyeslQASWTyaVTYLVSALASFTVICTleeFGTRTPTSRQRDG 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 210 LMMPHDRVTKSCMFLLL---------------LSLGGLPPFLGFFPKWLIIQTMTDMN-------YQFIVVTMVVMTLIT 267
Cdd:MTH00198 447 SFGNYNLVRRLVDLTILsrgqpyiafslaivfLSLAGIPPLLGFLGKWFILVGSIKIAfssslsiYYLVALFAIICTCIS 526
|
330 340
....*....|....*....|....*...
gi 1946843174 268 LFFYLRLTFLAFlFSYTELKMIHPTPLN 295
Cdd:MTH00198 527 AFYYIRIVATIY-FNFTRPLIKTKTPLS 553
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
15-279 |
5.15e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 60.28 E-value: 5.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 15 LEINLLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFKSpLTMG-----------TNIFQILICSTLM 83
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGT-LNMAdlagalaenptVVTAFGFVLLALA 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 84 LKMGAAPFHFWFPATM-EGLSWKNCFILMTWQKIAPLML---LAYVIEMNIFISM--------IIVVSVLIGSLGGLNQS 151
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAVYALiriYFTVFGGDFRFALglgwllavLALLSMLVGSLAALGQD 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 152 SLRKLMAYSSINHIGWMISAMVIGENIWELYFMIYTL--------LSLSIILIFSTHHIYHINQNFLMMPHDRVTKSCMF 223
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalmkgaLFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFA 373
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1946843174 224 LLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAF 279
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAF 429
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
36-280 |
2.55e-08 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 55.10 E-value: 2.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 36 EASLKYFLVQALASAMLLFSIILMYMLFKSpLTMGTNIFQI-------------LICSTLMLKMGAAPFHFWFP-ATMEG 101
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIALLYGQYGT-LNMAYLAVKMsenptvvakialaLFIAGLAMKSGAVPVHMWLPdAYPAA 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 102 LSWKNCFILMTwqKIAPLMLLAYVI-----------EMNIFISMIIVVSVLIGSLGGLNQSSLRKLMAYSSINHIGWMIS 170
Cdd:PRK08376 251 PSSISAMLLVI--KQAGLYALARVLfsiygpainlaTVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 171 AMVIGeniwelYFMIYTLLSLSIILIFSTHHIYHINQNFLM-------------------------MPHDRVTKSCMFLL 225
Cdd:PRK08376 329 GLGVG------LAALGDPAMASYGEIALAGGIYHIVNHALYkallfltagaviyetgtrnlnelggLARTMPKTTIAFLI 402
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1946843174 226 LLSLGG-LPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVmTLITLFFYLRLTFLAFL 280
Cdd:PRK08376 403 GAAAIVgLPPFNGFASKWLIYESSALFNPILGVIAMIG-SVLTLASFVKVFHTAFF 457
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
25-198 |
3.15e-08 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 54.67 E-value: 3.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 25 LMTNY--KNIMSTEASLKYFLVQALASAMLLFSIILMYML-------------FKSPLTMGTNIFQILICSTLMLKMGAA 89
Cdd:PRK02504 148 LLTGYmkRDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLsggstqlsaialaLITSPSLGLALALVFVIAGIAFKISAV 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 90 PFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---------AYVIEMNIFISMIIVVSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:PRK02504 228 PFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAirllvtafpSFDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYS 307
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1946843174 161 SINHIGWMISAMVIGEN----IWELYFMIYTLLSL---SIILIFS 198
Cdd:PRK02504 308 SIGQAGFVMIGLVAGTEagyaSMVFYLLAYLFMNLgafACVILFS 352
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
30-279 |
2.10e-07 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 51.93 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 30 KNIMSTEASLKYFLVQALASAMLLFSIILMYML----------------FKSPLTMGTNIFQILICSTLMLKMGAAPFHF 93
Cdd:CHL00049 156 KDVRSNEATMKYLLMGGASSSILVYGFSWLYGLsggeielqeivnglinTQMYNSPGISIALIFITVGIGFKLSLAPFHQ 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 94 WFPATMEGLSWKNCFILMTWQKIAPLMLLAYVI---------EMNIFISMIIVVSVLIGSLGGLNQSSLRKLMAYSSINH 164
Cdd:CHL00049 236 WTPDVYEGSPTPVVAFLSVTSKVAASALATRIFdipfyfssnEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQ 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 165 IGWMISAMVIGENIWE-----LYFMIYTLLSLS----IILIFSTHHIYHINQNFLMMPHDRVTKSCMFLLLLSLGGLPPF 235
Cdd:CHL00049 316 IGYVIIGIIVGDSNDGyasmiTYMLFYIFMNLGtfacIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPL 395
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1946843174 236 LGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAF 279
Cdd:CHL00049 396 AGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKIIKLLM 439
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
36-314 |
4.12e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 51.13 E-value: 4.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 36 EASLKYFLVQALASAMLLFSIILMY---------------MLFKSPLTMG--------TNIFQILICSTLMLKMGAAPFH 92
Cdd:PRK12667 164 EAAIKYALIGAVGTTLYFLALAFLYatfgtlnmadlsakiRGLSFPLTGGlagnpplaLGVALALALWAFTIKAAIFPNH 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 93 FWFP-----------ATMEGLSWK---NCFILMTWQKIAPLMLLAYVIEMNIFISMII-VVSVLIGSLGGLNQSSLRKLM 157
Cdd:PRK12667 244 FWLPdahpaapspvsAMLSGLVVNvgaYAIIRFLYTIFGISPSLIDFRAALSPILIILgAVSAIIGALMMVVQKDVKRLL 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 158 AYSSINHIGWMISAMVIGENIWELYFMIYT--------LLSLS---IILIFSTHHIYHINQNFLMMPhdrVTKSCMFLLL 226
Cdd:PRK12667 324 AYSTISHMGYIFMGIGIGTQLGLAAALFHIinhaiaksLLFLAsgvFIHAAGTRDIDELAGLGRKMP---IASFAFLIGA 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 227 LSLGGLPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFLF--SYTELKMIHPTPLNSLPFM---T 301
Cdd:PRK12667 401 LSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGkpKSGEEVEHKESPSMSVVILvlaL 480
|
330
....*....|...
gi 1946843174 302 TLILTGLSTLGLP 314
Cdd:PRK12667 481 AVLILGILALFLP 493
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
29-280 |
8.43e-05 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 43.99 E-value: 8.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 29 YKNIMSTEASLKYFLVQALASAMLLFSIILMYMLFKSP-----LTMGTNIFQ--ILICSTLMLKMGAA------PFHFWF 95
Cdd:COG1009 155 YEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLnfselLAAAPTILSspLLTLILLLLLLGAFgksaqfPLHFWL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 96 PATME-----------------GLswkncFILMtwqKIAPLMLLAYVIemNIFISMIIVVSVLIGSLGGLNQSSLRKLMA 158
Cdd:COG1009 235 PDAMEgptpvsallhaatmvkaGV-----YLLA---RLSPLFALSPVW--LTVVAIIGAITALFAALIALAQTDIKRVLA 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 159 YSSINHIGWMISAMVIGeNIWELYFMIYT------LLSL---SIILIFSTHHIYHINQNFLMMPhdrVTKSCMFLLLLSL 229
Cdd:COG1009 305 YSTVSQLGYMFLALGVG-AYVAALFHLLThaffkaLLFLgagSVIHATGTRDIRKMGGLRKKMP---ITAITFLIGALSL 380
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1946843174 230 GGLPPFLGFFPKWLIIQ-TMTDMNYQFIVVTMVVMT-LITLFFYLRLTFLAFL 280
Cdd:COG1009 381 AGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGaFLTAFYSFRLFFLVFF 433
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
6-287 |
1.38e-04 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 42.94 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 6 TSWLGVWMGLEINLLSFIPLMTNYKNIMsteasLKYFLVQALASAMLLFSIILMYMLFkspltmgtnifqilicstLMLK 85
Cdd:MTH00091 14 FVWWSVFLLMTLLFVFLNKGMGSYSSLF-----NYFVLQESLGLLFLLFSFGYFQFLI------------------LMMK 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 86 MGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFISMIIVVSVLIGSLggLNQSSLRKLMAYSSINHI 165
Cdd:MTH00091 71 IGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQM--FLLKSYKNLLILSSTESF 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 166 GWMISAMVIgeNIWELYFMIYTLLSLSIILIFSTHHIYHINQNFLMMphdrvtkscmfllLLSLGGLPPFLGFFPKWLII 245
Cdd:MTH00091 149 NWLILSFFF--SFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWET-------------LLVFMNLPFSVTFFVKIFSL 213
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1946843174 246 QTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFLFSYTELK 287
Cdd:MTH00091 214 SEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFK 255
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
19-166 |
1.61e-03 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 40.10 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 19 LLSFIPLMTNYKNIMSTEASLKYFLVQALASAMLLFSIILMYML---FKSPLTMGTNIFQILICSTLML----KMGAAPF 91
Cdd:PRK08667 145 LSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQtgsFELSPLGASAGILSLVFLLLFLgfgiKAGIIPF 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 92 HFWFPATMEGlSWKNCFILMT--WQKIAPLMLLAYVIEM-------NIFISMIIVVSVLIGSLGGLNQSSLRKLMAYSSI 162
Cdd:PRK08667 225 HKWLPYAHPA-SPSNVSALMSgvMLKVAVYGLVRFLMDVlspelwwGVLILLAGSISALLGVIYALKEHDLKGLLAYSSI 303
|
....
gi 1946843174 163 NHIG 166
Cdd:PRK08667 304 ENIG 307
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
37-166 |
7.01e-03 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 37.75 E-value: 7.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 37 ASLKYFLVQALASAMLLFSIILMYML-----FKSPLTMGTNI---FQILICSTLML----KMGAAPFHFWFPATME---- 100
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLagaltFDIAELAAAPLpltAQLLLFLAFFIafavKVPMFPFHTWLPDAHVeapt 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 101 -------GlswkncfILMtwqKIAPLMLLAYVIEM-----NIFISMII---VVSVLIGSLGGLNQSSLRKLMAYSSINHI 165
Cdd:COG1008 242 agsvllaG-------VLL---KMGGYGLLRFALPLfpeasAYFAPLLAalgVIGIIYGALVALAQTDLKRLIAYSSVSHM 311
|
.
gi 1946843174 166 G 166
Cdd:COG1008 312 G 312
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
132-313 |
8.56e-03 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 37.62 E-value: 8.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 132 ISMIIVVSVLIGSLGGLNQSSLRKLMAYSSINHIGWMISAMVIGeNIWELYFMIYTLLSLSII---LIFSTHHIYHINQN 208
Cdd:PRK12663 275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALG-TPAGINGAIFYLVHDMVVktaLFLIAGSLVRLTGY 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 209 FLM-----MPHDRVTKSCMFLLLLSLGG-LPPFLGFFPKWLIIQTMTDMNYQFIVVTMVVMTLITLFFYLRLTFLAFlFS 282
Cdd:PRK12663 354 RSLqylggLYRKEPLFGALFLILIFAIGgLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLAY-WG 432
|
170 180 190
....*....|....*....|....*....|..
gi 1946843174 283 YTELKMIHPTPLNSLPFMTTLILTGLS-TLGL 313
Cdd:PRK12663 433 DKDGEEVNFKPIPLYRKLPLSILAVVViAMGI 464
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
34-178 |
9.04e-03 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 37.67 E-value: 9.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 34 STEASLKYFLVQALASAMLLFSIILMY-------------MLFKSPLTMGTNIFQILICSTLMLKMGAAPFHFWFPATME 100
Cdd:PRK08668 145 SRKASLKYFVLSAIGAYAMLYAIFLIYaktgtfdfadisqGLINDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYS 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946843174 101 ------------GLSWKNCFILmtwqkiapLMLLAYVIEMNIFISMIIV---------------VSVLIGSLGGLNQSSL 153
Cdd:PRK08668 225 eapqsfsavlsgQLSKLGAYGF--------LLVLYVLPGTKLFSEFGTYrgvplfnyilawlgnISIIVGTLMAILQEDI 296
|
170 180
....*....|....*....|....*
gi 1946843174 154 RKLMAYSSINHIGWMISAMVIGENI 178
Cdd:PRK08668 297 KKLIAYSSVANGGYILVGLGLGTSL 321
|
|
| |
