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Conserved domains on  [gi|194375095|dbj|BAG62660|]
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unnamed protein product [Homo sapiens]

Protein Classification

ubiquitin carboxyl-terminal hydrolase family protein( domain architecture ID 913)

ubiquitin carboxyl-terminal hydrolase family protein is a C19 family peptidase that may deubiquitinate polyubiquitinated target proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
192-356 1.93e-53

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02664:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 327  Bit Score: 181.92  E-value: 1.93e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 192 SVLDLVNYFLSPEKLTAENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRTMRRRKILDDVSIPLLLRLPL-- 269
Cdd:cd02664  135 SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVrv 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 270 ---------------AGGRGQA------YDLCSVVVHSGVSSESGHYYCYAR-----EGAARPAPSLGTADRPEPENQWY 323
Cdd:cd02664  215 eskssesplekkeeeSGDDGELvtrqvhYRLYAVVVHSGYSSESGHYFTYARdqtdaDSTGQECPEPKDAEENDESKNWY 294
                        170       180       190
                 ....*....|....*....|....*....|...
gi 194375095 324 LFNDTRVSFSSFESVSNVTSFFPKDTAYVLFYR 356
Cdd:cd02664  295 LFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327
 
Name Accession Description Interval E-value
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
192-356 1.93e-53

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 181.92  E-value: 1.93e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 192 SVLDLVNYFLSPEKLTAENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRTMRRRKILDDVSIPLLLRLPL-- 269
Cdd:cd02664  135 SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVrv 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 270 ---------------AGGRGQA------YDLCSVVVHSGVSSESGHYYCYAR-----EGAARPAPSLGTADRPEPENQWY 323
Cdd:cd02664  215 eskssesplekkeeeSGDDGELvtrqvhYRLYAVVVHSGYSSESGHYFTYARdqtdaDSTGQECPEPKDAEENDESKNWY 294
                        170       180       190
                 ....*....|....*....|....*....|...
gi 194375095 324 LFNDTRVSFSSFESVSNVTSFFPKDTAYVLFYR 356
Cdd:cd02664  295 LFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
195-358 2.39e-15

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 78.39  E-value: 2.39e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 195 DLVNYFLSPEKLTAENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRtmRRRKILDDVSIPlLLRLPLAGGRG 274
Cdd:COG5560  679 DCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRS--FRDKIDDLVEYP-IDDLDLSGVEY 755
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 275 Q------AYDLcSVVVHSGVSSESGHYYCYAREGAarpapslgtadrpepENQWYLFNDTRvsfssfesvsnVTSFFPKD 348
Cdd:COG5560  756 MvddprlIYDL-YAVDNHYGGLSGGHYTAYARNFA---------------NNGWYLFDDSR-----------ITEVDPED 808
                        170
                 ....*....|....
gi 194375095 349 T----AYVLFYRQR 358
Cdd:COG5560  809 SvtssAYVLFYRRK 822
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
200-355 4.18e-15

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 75.94  E-value: 4.18e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095  200 FLSPEKLTAENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRTmrRRKILDDVSIPLLLRL-PLAG------- 271
Cdd:pfam00443 171 FSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRST--WEKLNTEVEFPLELDLsRYLAeelkpkt 248
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095  272 GRGQAYDL----CsvvvhSGVSSESGHYYCYAregaarpapslgtadRPEPENQWYLFNDTRVSFSSFESVSNvtsffpK 347
Cdd:pfam00443 249 NNLQDYRLvavvV-----HSGSLSSGHYIAYI---------------KAYENNRWYKFDDEKVTEVDEETAVL------S 302

                  ....*...
gi 194375095  348 DTAYVLFY 355
Cdd:pfam00443 303 SSAYILFY 310
 
Name Accession Description Interval E-value
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
192-356 1.93e-53

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 181.92  E-value: 1.93e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 192 SVLDLVNYFLSPEKLTAENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRTMRRRKILDDVSIPLLLRLPL-- 269
Cdd:cd02664  135 SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVrv 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 270 ---------------AGGRGQA------YDLCSVVVHSGVSSESGHYYCYAR-----EGAARPAPSLGTADRPEPENQWY 323
Cdd:cd02664  215 eskssesplekkeeeSGDDGELvtrqvhYRLYAVVVHSGYSSESGHYFTYARdqtdaDSTGQECPEPKDAEENDESKNWY 294
                        170       180       190
                 ....*....|....*....|....*....|...
gi 194375095 324 LFNDTRVSFSSFESVSNVTSFFPKDTAYVLFYR 356
Cdd:cd02664  295 LFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
187-356 7.19e-21

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 91.39  E-value: 7.19e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 187 SEGSRSVLDLVNYFLSPEKLTAENRYYCESCaSLQDAEKVVELSQGPCYLILTLLRFSFDlRTMRRRKILDDVSIPLLLR 266
Cdd:cd02257   95 GLPQVSLEDCLEKFFKEEILEGDNCYKCEKK-KKQEATKRLKIKKLPPVLIIHLKRFSFN-EDGTKEKLNTKVSFPLELD 172
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 267 L----------PLAGGRGQAYDLCSVVVHSGVSSESGHYYCYAREGaarpapslgtadrpePENQWYLFNDTRVSFSSFE 336
Cdd:cd02257  173 LspylsegekdSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDP---------------SDGKWYKFNDDKVTEVSEE 237
                        170       180
                 ....*....|....*....|
gi 194375095 337 SVSNVTSFfpKDTAYVLFYR 356
Cdd:cd02257  238 EVLEFGSL--SSSAYILFYE 255
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
189-327 1.83e-18

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 85.94  E-value: 1.83e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 189 GSRSVLDLVNYFLSPEKLTAENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRTMRRRKILDDVSIPLLLRLP 268
Cdd:cd02668  154 GHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMG 233
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 194375095 269 --LAGGRGQ--AYDLCSVVVHSGVSSESGHYYCYAREgaarpaPSLGTadrpepenqWYLFND 327
Cdd:cd02668  234 eyLAESDEGsyVYELSGVLIHQGVSAYSGHYIAHIKD------EQTGE---------WYKFND 281
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
178-356 7.90e-16

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 76.56  E-value: 7.90e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 178 IPSGERTCGSEgsrSVLDLVNYFLSPEKLTAENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDlrTMRRRKILD 257
Cdd:cd02674   74 IPSGSGDAPKV---TLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFS--RGSTRKLTT 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 258 DVSIPL--LLRLPLAGGRGQA----YDLCsVVVHSGVSSESGHYYCYARegaarpapslgtadRPEPeNQWYLFNDTRVS 331
Cdd:cd02674  149 PVTFPLndLDLTPYVDTRSFTgpfkYDLY-AVVNHYGSLNGGHYTAYCK--------------NNET-NDWYKFDDSRVT 212
                        170       180
                 ....*....|....*....|....*
gi 194375095 332 FSSFESVSNvtsffpkDTAYVLFYR 356
Cdd:cd02674  213 KVSESSVVS-------SSAYILFYE 230
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
195-358 2.39e-15

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 78.39  E-value: 2.39e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 195 DLVNYFLSPEKLTAENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRtmRRRKILDDVSIPlLLRLPLAGGRG 274
Cdd:COG5560  679 DCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRS--FRDKIDDLVEYP-IDDLDLSGVEY 755
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 275 Q------AYDLcSVVVHSGVSSESGHYYCYAREGAarpapslgtadrpepENQWYLFNDTRvsfssfesvsnVTSFFPKD 348
Cdd:COG5560  756 MvddprlIYDL-YAVDNHYGGLSGGHYTAYARNFA---------------NNGWYLFDDSR-----------ITEVDPED 808
                        170
                 ....*....|....
gi 194375095 349 T----AYVLFYRQR 358
Cdd:COG5560  809 SvtssAYVLFYRRK 822
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
189-356 2.75e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 76.53  E-value: 2.75e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 189 GSRSVLDLVNYFLSPEKLTAENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRTMRRRKILDDVSIPLLLRL- 267
Cdd:cd02659  149 GKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMe 228
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 268 -----PLAGGRGQAYDLCSVVVHSGV--------SSESGHYYCYAregaarpapslgtadRPEPENQWYLFNDTRvsfss 334
Cdd:cd02659  229 pytekGLAKKEGDSEKKDSESYIYELhgvlvhsgDAHGGHYYSYI---------------KDRDDGKWYKFNDDV----- 288
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 194375095 335 fesvsnVTSF-------------------------FPKDT-AYVLFYR 356
Cdd:cd02659  289 ------VTPFdpndaeeecfggeetqktydsgpraFKRTTnAYMLFYE 330
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
200-355 4.18e-15

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 75.94  E-value: 4.18e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095  200 FLSPEKLTAENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRTmrRRKILDDVSIPLLLRL-PLAG------- 271
Cdd:pfam00443 171 FSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRST--WEKLNTEVEFPLELDLsRYLAeelkpkt 248
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095  272 GRGQAYDL----CsvvvhSGVSSESGHYYCYAregaarpapslgtadRPEPENQWYLFNDTRVSFSSFESVSNvtsffpK 347
Cdd:pfam00443 249 NNLQDYRLvavvV-----HSGSLSSGHYIAYI---------------KAYENNRWYKFDDEKVTEVDEETAVL------S 302

                  ....*...
gi 194375095  348 DTAYVLFY 355
Cdd:pfam00443 303 SSAYILFY 310
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
188-355 2.01e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 70.42  E-value: 2.01e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 188 EGSRSVLDLVNYFLSPEKLTAENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRTMRRRKILDDVSIPLLLRL 267
Cdd:cd02663  144 EQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRL 223
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 268 PLAGGRG----QAYDLCSVVVHSGVSSESGHYYCYAREGaarpapslgtadrpepeNQWYLFNDtrvSFSSFESVSNVTS 343
Cdd:cd02663  224 FNTTDDAenpdRLYELVAVVVHIGGGPNHGHYVSIVKSH-----------------GGWLLFDD---ETVEKIDENAVEE 283
                        170
                 ....*....|....*.
gi 194375095 344 FF----PKDTAYVLFY 355
Cdd:cd02663  284 FFgdspNQATAYVLFY 299
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
188-355 1.96e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 67.69  E-value: 1.96e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 188 EGSRSVLDLVNYFLSPEKLTAENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDlrtmRRRKILDDVSIPLLLRL 267
Cdd:cd02661  159 KGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF----RGGKINKQISFPETLDL 234
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 268 -PL---AGGRGQAYDLCSVVVHSGVSSESGHYYCYARegaarpapslgtadrpEPENQWYLFNDTRVSFSSFESVSNvts 343
Cdd:cd02661  235 sPYmsqPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVK----------------SSNGKWYNMDDSKVSPVSIETVLS--- 295
                        170
                 ....*....|..
gi 194375095 344 ffpkDTAYVLFY 355
Cdd:cd02661  296 ----QKAYILFY 303
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
200-355 1.37e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 50.06  E-value: 1.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 200 FLSPEKLTaENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRTMrRRKILDDVSIPLLLRLP--LAGGRGQAY 277
Cdd:cd02660  185 FTRPEKLG-DFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKT-SRKIDTYVQFPLELNMTpyTSSSIGDTQ 262
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 278 DLCSVVVHSG----------VSSESGHYYCYAREGaarpapslgtadrpepENQWYLFNDTRvsfssfesvsnVTSF--- 344
Cdd:cd02660  263 DSNSLDPDYTydlfavvvhkGTLDTGHYTAYCRQG----------------DGQWFKFDDAM-----------ITRVsee 315
                        170
                 ....*....|..
gi 194375095 345 -FPKDTAYVLFY 355
Cdd:cd02660  316 eVLKSQAYLLFY 327
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
204-329 1.86e-06

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 50.64  E-value: 1.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095  204 EKLTAENRYYCEScASLQDAEKVVELSQGPCYLILTLLRFSFDLRTMRRRKILDDVSIPLLLRL-PL-------AGGRGQ 275
Cdd:COG5077   351 ETLDGDNRYNAEK-HGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLlPFldrdadkSENSDA 429
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 194375095  276 AYDLcSVVVHSGVSSESGHYYCYAregaarpapslgtadRPEPENQWYLFNDTR 329
Cdd:COG5077   430 VYVL-YGVLVHSGDLHEGHYYALL---------------KPEKDGRWYKFDDTR 467
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
200-356 4.88e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 45.27  E-value: 4.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 200 FLSPEKLTAENRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRTMRRRKILDDVSIPLL--LRLPL----AGGR 273
Cdd:cd02671  189 FASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLtpLKLSLeewsTKPK 268
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 274 GQAYDLCSVVVHSGVSSESGHYYCYARegaarpapslgtadrpepenqWYLFNDTRVSFSSFESVSNVTS--FFPKDTAY 351
Cdd:cd02671  269 NDVYRLFAVVMHSGATISSGHYTAYVR---------------------WLLFDDSEVKVTEEKDFLEALSpnTSSTSTPY 327

                 ....*
gi 194375095 352 VLFYR 356
Cdd:cd02671  328 LLFYK 332
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
192-328 6.10e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 41.20  E-value: 6.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 192 SVLDLVNYFLSPEKLtaENrYYCESCAslqdaEKVVELsqgPCYLILTLLRFSFDLR-TMRRRKIldDVSIPLLLRLPLa 270
Cdd:cd02662   97 TLEHCLDDFLSTEII--DD-YKCDRCQ-----TVIVRL---PQILCIHLSRSVFDGRgTSTKNSC--KVSFPERLPKVL- 162
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 194375095 271 ggrgqaYDLCSVvVHSGVSSESGHYYCYAR-----EGAARPAPSLGTADRPEPENQWYLFNDT 328
Cdd:cd02662  163 ------YRLRAV-VVHYGSHSSGHYVCYRRkplfsKDKEPGSFVRMREGPSSTSHPWWRISDT 218
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
195-356 6.71e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 41.54  E-value: 6.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 195 DLVNYFLSPEKLtaenRYYCESCASLQDAEKVVELSQGPCYLILTLLRFSFdLRTMRRRKILDDVSIPLLLRlplaGGRg 274
Cdd:cd02658  182 DCLKAYFAPETI----EDFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQL-LENWVPKKLDVPIDVPEELG----PGK- 251
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194375095 275 qaYDLCSVVVHSGVSSESGHYYCYAREGAArpapslgtadrpePENQWYLFNDTRVSFSSFESvsnvtsfFPKDTAYVLF 354
Cdd:cd02658  252 --YELIAFISHKGTSVHSGHYVAHIKKEID-------------GEGKWVLFNDEKVVASQDPP-------EMKKLGYIYF 309

                 ..
gi 194375095 355 YR 356
Cdd:cd02658  310 YQ 311
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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