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Conserved domains on  [gi|194351602|gb|ACF54171|]
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BM2 protein [Influenza B virus (B/NYMC BX-5A(Lee/1940-Jilin/20/2003))]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Flu_B_M2 super family cl04739
Influenza B matrix protein 2 (BM2); M2 is synthesized in the late phase of infection and ...
 1-109 2.04e-69

Influenza B matrix protein 2 (BM2); M2 is synthesized in the late phase of infection and incorporated into the virion. It may be phosphorylated in vivo. The function of BM2 is unknown.


The actual alignment was detected with superfamily member pfam04772:

Pssm-ID: 282607  Cd Length: 109  Bit Score: 202.99  E-value: 2.04e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194351602    1 MLEPLQILSICSFILSALHFMAWTIGHLNQIRRGVNLKIQIRNPNKEAINREVSILRHNYQKEIQAKETMKKILSDNMEV 80
Cdd:pfam04772   1 MLEPLQILSICSFILSALHFMAWTIGHLNQIKRGVNLKIQIRNPNKEAINREVSILRHNYQKEIQAKETMKKILSDNMEV 80

                          90       100
                  ....*....|....*....|....*....
gi 194351602   81 LGDHIVVEGLSTDEIIKMGETVLEVEELQ 109
Cdd:pfam04772  81 LGDHIVVEGLSTDEIIKMGETVLEVEELQ 109
 
Name Accession Description Interval E-value
Flu_B_M2 pfam04772
Influenza B matrix protein 2 (BM2); M2 is synthesized in the late phase of infection and ...
 1-109 2.04e-69

Influenza B matrix protein 2 (BM2); M2 is synthesized in the late phase of infection and incorporated into the virion. It may be phosphorylated in vivo. The function of BM2 is unknown.


Pssm-ID: 282607  Cd Length: 109  Bit Score: 202.99  E-value: 2.04e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194351602    1 MLEPLQILSICSFILSALHFMAWTIGHLNQIRRGVNLKIQIRNPNKEAINREVSILRHNYQKEIQAKETMKKILSDNMEV 80
Cdd:pfam04772   1 MLEPLQILSICSFILSALHFMAWTIGHLNQIKRGVNLKIQIRNPNKEAINREVSILRHNYQKEIQAKETMKKILSDNMEV 80

                          90       100
                  ....*....|....*....|....*....
gi 194351602   81 LGDHIVVEGLSTDEIIKMGETVLEVEELQ 109
Cdd:pfam04772  81 LGDHIVVEGLSTDEIIKMGETVLEVEELQ 109
 
Name Accession Description Interval E-value
Flu_B_M2 pfam04772
Influenza B matrix protein 2 (BM2); M2 is synthesized in the late phase of infection and ...
 1-109 2.04e-69

Influenza B matrix protein 2 (BM2); M2 is synthesized in the late phase of infection and incorporated into the virion. It may be phosphorylated in vivo. The function of BM2 is unknown.


Pssm-ID: 282607  Cd Length: 109  Bit Score: 202.99  E-value: 2.04e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194351602    1 MLEPLQILSICSFILSALHFMAWTIGHLNQIRRGVNLKIQIRNPNKEAINREVSILRHNYQKEIQAKETMKKILSDNMEV 80
Cdd:pfam04772   1 MLEPLQILSICSFILSALHFMAWTIGHLNQIKRGVNLKIQIRNPNKEAINREVSILRHNYQKEIQAKETMKKILSDNMEV 80

                          90       100
                  ....*....|....*....|....*....
gi 194351602   81 LGDHIVVEGLSTDEIIKMGETVLEVEELQ 109
Cdd:pfam04772  81 LGDHIVVEGLSTDEIIKMGETVLEVEELQ 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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