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Conserved domains on  [gi|1943013803|ref|XP_037981863|]
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zinc finger CCHC domain-containing protein 7 isoform X2 [Motacilla alba alba]

Protein Classification

CCHC-type zinc finger protein( domain architecture ID 1000253)

CCHC-type zinc finger protein similar to human cellular nucleic acid-binding protein, a single-stranded DNA-binding protein that preferentially binds to the sterol regulatory element (SRE) sequence 5'-GTGCGGTG-3', and thereby mediates transcriptional repression

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00368 super family cl31762
universal minicircle sequence binding protein (UMSBP); Provisional
 283-354 1.70e-07

universal minicircle sequence binding protein (UMSBP); Provisional


The actual alignment was detected with superfamily member PTZ00368:

Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 50.58  E-value: 1.70e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1943013803 283 TCRNCHRPGHLSKNCPT------PKACPEIWRQYHLTTK-PGPIKAGgsaserAASVYCYNCSRQGHLGYECSEKRMQG 354
Cdd:PTZ00368   54 SCYNCGKTGHLSRECPEappgsgPRSCYNCGQTGHISREcPNRAKGG------AARRACYNCGGEGHISRDCPNAGKRP 126
 
Name Accession Description Interval E-value
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 283-354 1.70e-07

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 50.58  E-value: 1.70e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1943013803 283 TCRNCHRPGHLSKNCPT------PKACPEIWRQYHLTTK-PGPIKAGgsaserAASVYCYNCSRQGHLGYECSEKRMQG 354
Cdd:PTZ00368   54 SCYNCGKTGHLSRECPEappgsgPRSCYNCGQTGHISREcPNRAKGG------AARRACYNCGGEGHISRDCPNAGKRP 126
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 277-364 1.73e-04

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 42.53  E-value: 1.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1943013803 277 RADKNVTCRNCHRPGHLSKNcptpkaCPEIWRQYHLTTKPG-PIKaggsaseraasVYCYNCSRQGHLGYECSEKRMqgn 355
Cdd:COG5082   116 SKDQQKSCFDCNSTRHSSED------CPSIWKHYVLNNGDGhPIK-----------KFCYSCGSAGHFGDDCKEPRS--- 175


                  ....*....
gi 1943013803 356 mfPTSPFVC 364
Cdd:COG5082   176 --SRVPYVC 182
 
Name Accession Description Interval E-value
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 283-354 1.70e-07

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 50.58  E-value: 1.70e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1943013803 283 TCRNCHRPGHLSKNCPT------PKACPEIWRQYHLTTK-PGPIKAGgsaserAASVYCYNCSRQGHLGYECSEKRMQG 354
Cdd:PTZ00368   54 SCYNCGKTGHLSRECPEappgsgPRSCYNCGQTGHISREcPNRAKGG------AARRACYNCGGEGHISRDCPNAGKRP 126
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 267-365 1.51e-06

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 47.88  E-value: 1.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1943013803 267 GVRH-----SSVRYYRADKNVTCRNCHRPGHLSKNCPTPKACPEIWRQYHlTTKPGPI-KAGGSASERAASVYCYNCSRQ 340
Cdd:PTZ00368    8 GVGHqsrecPNSAPAGAAKARPCYKCGEPGHLSRECPSAPGGRGERSCYN-CGKTGHLsRECPEAPPGSGPRSCYNCGQT 86

                          90       100
                  ....*....|....*....|....*
gi 1943013803 341 GHLGYECSEKRMQGNMFPTspfvCY 365
Cdd:PTZ00368   87 GHISRECPNRAKGGAARRA----CY 107
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 277-364 1.73e-04

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 42.53  E-value: 1.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1943013803 277 RADKNVTCRNCHRPGHLSKNcptpkaCPEIWRQYHLTTKPG-PIKaggsaseraasVYCYNCSRQGHLGYECSEKRMqgn 355
Cdd:COG5082   116 SKDQQKSCFDCNSTRHSSED------CPSIWKHYVLNNGDGhPIK-----------KFCYSCGSAGHFGDDCKEPRS--- 175


                  ....*....
gi 1943013803 356 mfPTSPFVC 364
Cdd:COG5082   176 --SRVPYVC 182
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 284-387 6.05e-04

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 40.99  E-value: 6.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1943013803 284 CRNCHRPGHLSKNCPTPKACPEIWRQYHLTTKPGPIKaggsaseraasvyCYNCSRQGHLGYECSEKRMQGNMFPTSPFV 363
Cdd:COG5082    63 CFNCGQNGHLRRDCPHSICYNCSWDGHRSNHCPKPKK-------------CYNCGETGHLSRDCNPSKDQQKSCFDCNST 129

                          90       100
                  ....*....|....*....|....
gi 1943013803 364 CYYDDECDIRRRASRLKRKVADLQ 387
Cdd:COG5082   130 RHSSEDCPSIWKHYVLNNGDGHPI 153
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 283-350 3.08e-03

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 38.25  E-value: 3.08e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1943013803 283 TCRNCHRPGHLSKNCPTPKACPeiwrqyhlttkpgpikAGGSAseraasvyCYNCSRQGHLGYECSEK 350
Cdd:PTZ00368  105 ACYNCGGEGHISRDCPNAGKRP----------------GGDKT--------CYNCGQTGHLSRDCPDK 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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