|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK12933 |
protein translocase subunit SecD; |
32-594 |
0e+00 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 655.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 32 SALPNLYPNQSWLYVSAAPHSEiqtpPSTNTLVTFLNEQGLNVAQAHESQA-TISVLLNEPTKSAQAQAAIKAQYANTQT 110
Cdd:PRK12933 31 SAIPTWYGEDAAVQVSAKAGLL----LNVVELRQLLQAQGINVKRIDQKEGkTLIVLDDDSQQSQAKTLLSSMVKEPKEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 111 KIVERATSPNWLQSFGLSPIKLGLDLNGGVLFVLDVDLDKAIDEQLVSAYQQAKSIIIKQKAHGVKALQTQTGFVINALP 190
Cdd:PRK12933 107 TLSLASAAPKWLQNMGFSPIKLGLDLRGGVQFLLDVDVDPVYQEQRDALVDSVRQFLREQRIRGVSVRLDDSDQLAVTTP 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 191 NAaDKLPSVIKELQSRFANLAVVTNNNgtvKTAQFSYSEQGRSAFDKEVMSQTLTTLRSRIEELGITEAVTQRQGKQRIR 270
Cdd:PRK12933 187 DN-DARSAVRQFIQQNYPGWQVTNSDD---RGLQLKLSQQEKTKFRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIR 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 271 IELPGVQDPTEAKRIIGATASLGFYQLK---AVGGQTFNLQSGGTIKLDPVPIFTGEHINNAHAGRDDWSKPLVQLSLDS 347
Cdd:PRK12933 263 IELPGVQDPAAAKNVIGATASLAFYEVKesgSVNAKVLKDKNGRPVYVARRPVLGGEHIVDARASLGEMGMAEVNISLDR 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 348 QGGDAMSAFSKANIGKPMATVYSEYSQNAKGEVVKKSEVINVANIAQHLSSRFSITNMQSPQAAADLALLLRAGSLSAPV 427
Cdd:PRK12933 343 AGGKKMSDFSRDNIGKPMATSYSEYSRDEQGKTKQSEEVISVATIQSQLGDRFRITGAGSYQEAQQLALLLRAGSLTAPV 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 428 TIVHEQTIGPSLGSENISNGLAALMLGMGITLAFMAMWYRRLGLIANVALILNLTSLVGLMSLLPGVVLTLPGIAGLVLT 507
Cdd:PRK12933 423 TIVEERTIGPSLGAENIENGFAALALGMGITLLFMALWYRRLGWVANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLT 502
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 508 IGMAVDTNVIIFERIKEERRKGRAPYQAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTG 587
Cdd:PRK12933 503 VGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTG 582
|
....*..
gi 1942001571 588 VYVSKVL 594
Cdd:PRK12933 583 IFASRAL 589
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
116-609 |
5.15e-168 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 486.65 E-value: 5.15e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 116 ATSPNWLQSFGLSPIKLGLDLNGGVLFVLDVDLDKAIDEQLVSAYQQAKSIIIKQKahgvkaLQTQTGFVINALPNAADK 195
Cdd:PRK05812 27 PATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKK------IRYGGVEITFRDAEDRDK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 196 LPSVIKELQSrfanlavvtnnngtvktaqfsYSEQGRSAFDKEVMSQTLTTLRSRIEELGITEAVTQRQGKQRIRIELPG 275
Cdd:PRK05812 101 AIALLRKLSS---------------------LTEAELKEITEEALEQAIEIIRNRVNELGVAEPVIQRQGADRIVVELPG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 276 VQDPTEAKRIIGATASLGFYQLKavggqtfnlqsggtikldpvPIFTGEHINNAHAGRDDWSKPLVQLSLDSQGGDAMSA 355
Cdd:PRK05812 160 VQDTARAKEILGKTATLEFRLVP--------------------VILTGDDITDASASFDQQGQPVVNITLDSEGAKKFAD 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 356 FSKANIGKPMATVYseysqnakgevvkKSEVINVANIAQHLS-SRFSITNMQSPQAAADLALLLRAGSLSAPVTIVHEQT 434
Cdd:PRK05812 220 ITKANIGKRMAIVL-------------DGEVISAPVIQSAITgGSAQITGNFTAEEARDLALLLRAGALPAPLEIVEERT 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 435 IGPSLGSENISNGLAALMLGMGITLAFMAMWYRRLGLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDT 514
Cdd:PRK05812 287 IGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLVLILAVLSLL-GATLTLPGIAGIVLTIGMAVDA 365
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 515 NVIIFERIKEERRKGRAPYQAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTGVYVSKVL 594
Cdd:PRK05812 366 NVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRAL 445
|
490
....*....|....*
gi 1942001571 595 SQSLYLKLGKKSGVS 609
Cdd:PRK05812 446 VNLLYGRRKRLKKLS 460
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
121-599 |
3.41e-140 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 414.51 E-value: 3.41e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 121 WLQSFGLSPIKLGLDLNGGVLFVLDVDLDKAIDEQlvsayqqaksiiikqkahgvkalqtqtgfvinalpnaadklpsvi 200
Cdd:COG0342 22 VAPNGPAKPIKLGLDLQGGVHLLLEVDTDAALDED--------------------------------------------- 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 201 kelqsrfanlavvtnnngtvktaqfsysEQGRSAFDKEVMSQTLTTLRSRIEELGITEAVTQRQGKQRIRIELPGVQDPT 280
Cdd:COG0342 57 ----------------------------GDGIREVTEEALDQAIEILRNRVNELGVSEPVIQRQGDDRIVVELPGVQDPA 108
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 281 EAKRIIGATASLGFY---------QLKAVGGQTFNLQSGGTIKLDPVPIFTGEHINNAHAGRDD-WSKPLVQLSLDSQGG 350
Cdd:COG0342 109 EAKELLGKTAKLEFRlvddsadaqAAVPAGSELLPCRDGQPYLLLGPVVLTGDDLTDASAGFDQqTGQPVVSFTLDSEGA 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 351 DAMSAFSKANIGKPMATVYSEysqnakgevvkksEVINVANIAQHLSS-RFSITNMQSPQAAADLALLLRAGSLSAPVTI 429
Cdd:COG0342 189 KKFADATRENVGKPLAIVLDG-------------EVISAPVIQEPITGgSAQITGSFTVEEAQDLALLLRAGALPAPLEI 255
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 430 VHEQTIGPSLGSENISNGLAALMLGMGITLAFMAMWYRRLGLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGLVLTIG 509
Cdd:COG0342 256 VEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLSLL-GATLTLPGIAGIILTIG 334
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 510 MAVDTNVIIFERIKEERRKGRAPYQAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTGVY 589
Cdd:COG0342 335 MAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVKGFAVTLILGILISMFTAVP 414
|
490
....*....|
gi 1942001571 590 VSKVLSQSLY 599
Cdd:COG0342 415 VTRPLLNLLL 424
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
225-594 |
2.86e-123 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 369.69 E-value: 2.86e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 225 FSYSEQGRSAFDKEVMSQTLTTLRSRIEELGITEAVTQRQGKQRIRIELPGVQDPTEAKRIIGATASLGFYQ-------- 296
Cdd:TIGR01129 23 LKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLEFRLvddestsp 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 297 --------------LKAVGGQtfnlqsGGTIKLDPVPIFTGEHINNAHAGRDDWS-KPLVQLSLDSQGGDAMSAFSKANI 361
Cdd:TIGR01129 103 ddalagnvpagselLDSRSGD------PKYYLLKKSPVLTGDHITDATSSVDQRSgQPVVSFSLDSEGARIFGDFTQANI 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 362 GKPMATVYSEYsqnakgevvkkseVINVANIAQHLS-SRFSITNMQSPQAAADLALLLRAGSLSAPVTIVHEQTIGPSLG 440
Cdd:TIGR01129 177 GKRLAIVLDNK-------------VVSAPTIQEAITgGSGQITGNFTAEEANDLALVLRSGALPAPLQILEERTIGPSLG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 441 SENISNGLAALMLGMGITLAFMAMWYRRLGLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFE 520
Cdd:TIGR01129 244 ADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAF-GATLTLPGIAGLILTIGMAVDANVLIYE 322
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1942001571 521 RIKEERRKGRAPYQAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTGVYVSKVL 594
Cdd:TIGR01129 323 RIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLL 396
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
234-605 |
9.00e-101 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 322.95 E-value: 9.00e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 234 AFDKEVMSQTLTTLRSRIEELGITEAVTQRQGKQRIRIELPGVQDPTEAKRIIGATASLGF------YQLKAVGGQTFNL 307
Cdd:PRK13024 55 KADREALDSTVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQDPERARELLGSTAKLTFrdvtdpPPPGVGGPVVGPD 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 308 QSGGTIKLDPVpIFTGEHINNAHAGRDD--WSKPLVQLSLDSQGGDAMSAFSKANI-----GKPMAtvyseysqnakgeV 380
Cdd:PRK13024 135 EGKDTAVLNPV-LLSGDDLTDAGAKFDQdqTNRPSVSLKLKSEGAKKWAKVTEKNSkkgppNNRIA-------------I 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 381 VKKSEVINVANIAQHLS-SRFSITNMQSPQAAADLALLLRAGSLSAPVTIVHEQTIGPSLGSENISNGLAALMLGMGITL 459
Cdd:PRK13024 201 VLDPKVISAPTVNQPINgGSVQISGNFTVEEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFALIF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 460 AFMAMWYRRLGLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERRKGRAPYQAIEQG 539
Cdd:PRK13024 281 LFMLVYYGLPGLIANIALLLYIFLTLGALSSL-GAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKG 359
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1942001571 540 YKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTGVYVSKVLSqSLYLKLGKK 605
Cdd:PRK13024 360 FKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLL-ELLVKRGDK 424
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
114-586 |
6.48e-79 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 266.97 E-value: 6.48e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 114 ERATSPNWLQSfglSPIKLGLDLNGGVLFVLDVDLDKAIDEQLVSAYQQAKSIIiKQKAHGVKALqTQTGFVINALPNAA 193
Cdd:PRK14726 32 QLASLPSWLPH---RQVTLGLDLQGGSHIVLKVERSDIVKDRLEETVANIRNAL-RDAGIRYTGL-TGNGQTVQVRITDP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 194 DKLPSVIKELQSRFANLAVVTNNNGTVKTAQFSYSEQGRSAFD----------KEVMSQTLTTLRSRIEELGITEAVTQR 263
Cdd:PRK14726 107 AQTQAAVDALKPLTAPVSAGGLGGSSIQELTLQEGGEGQLRLQltdagidyrvSSALTQSIEVVRRRVAELGTTEPLIRR 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 264 QGKQRIRIELPGVQDPTEAKRIIGATASLGFYQL-------KAVGGQTfnlQSGGTI--KLD--PVP-------IFTGEH 325
Cdd:PRK14726 187 QGDDRIVVQVPGLVDPQRLKNLLNQPAKLSFRLVdssmpaqEALNGRP---PATSEVlySLDdpPVPylverraFVSGEN 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 326 INNAHAGRDDW-SKPLVQLSLDSQGGDAMSAFSKANIGKPMATVYSeysqnakGEVVKKSEVIN-VANIAQHLSSRFSIt 403
Cdd:PRK14726 264 LVDAQPVFDPQtNEPVVTFRLDAEGTQRFAQATQQNVGKHFAIVLD-------GQVISAPVIDEaITGGEGRISGNFSE- 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 404 nmqspQAAADLALLLRAGSLSAPVTIVHEQTIGPSLGSENISNGLAALMLGMGITLAFMAMWYRRLGLIANVALILNLTS 483
Cdd:PRK14726 336 -----QGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGFLGVIAVIALIVNVVL 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 484 LVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERRKGRAPYQAIEQGYKQAFGTIFDANITTMITALILYG 563
Cdd:PRK14726 411 IIAVLSLL-GATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFF 489
|
490 500
....*....|....*....|...
gi 1942001571 564 IGYGPVKGFAITLALGLVTSMFT 586
Cdd:PRK14726 490 LGSGAVRGFAVTLAVGILTTVFT 512
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
433-588 |
1.08e-47 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 165.51 E-value: 1.08e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 433 QTIGPSLGSENISNGLAALMLGMGITLAFMAMWYRRLGLIANVALILN-LTSLVGLMSLLpGVVLTLPGIAGLVLTIGMA 511
Cdd:TIGR00916 35 GTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHdVILILGVLSLF-GATLTLPGIAGLLTIIGYS 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1942001571 512 VDTNVIIFERIKEERRK--GRAPYQAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTGV 588
Cdd:TIGR00916 114 VDDTVVIFDRIREELRKykGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
240-594 |
3.18e-46 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 174.42 E-value: 3.18e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 240 MSQTLTTLRSRIEELGITEAVTQRQGKQRIRIELPGVQDPTEAKRIIGATASLGFYQL-------KAVGGQ--------- 303
Cdd:PRK13023 69 LETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMddtmspdDAIRGTppadseivy 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 304 TFNLQSGGTIkLDPVPIFTGEHINNAHAG-RDDWSKPLVQLSLDSQGGDAMSAFSKANIGKPMAtvyseysqnakgeVVK 382
Cdd:PRK13023 149 SFDDPPVGYL-LKKTPILTGHDITDAKASiSADDGQPVITLTLDDNGRRRLADLTAQGNENSFA-------------IVV 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 383 KSEVINVANIAQHL-SSRFSITNMQSPQAAADLALLLRAGSLSAPVTIVHEQTIGPSLGSENISNGLAALMLGMGITLAF 461
Cdd:PRK13023 215 DNQVVSAPTVSGPLdTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLF 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 462 MAMWYRRLGLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERRKGRAPYQAIEQGYK 541
Cdd:PRK13023 295 MVLSYGILGVIALVALVVNIIILTAVLSLI-GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFY 373
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1942001571 542 QAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTGVYVSKVL 594
Cdd:PRK13023 374 RALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLL 426
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
421-592 |
7.95e-43 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 165.80 E-value: 7.95e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 421 GSLSAPVTIVHEQTIGPSLGSENISNGLAALMLGMGITLAFMAMWYRRLGLIANVALILNLTSLVGLMSLLPGVvLTLPG 500
Cdd:PRK12911 885 GAMSFVPEVLSEEVISPELGKSQRTQGIISVCLGLAVLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQYLDAP-LTLSG 963
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 501 IAGLVLTIGMAVDTNVIIFERIKEERRKGRAPYQAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGL 580
Cdd:PRK12911 964 LAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGI 1043
|
170
....*....|..
gi 1942001571 581 VTSMFTGVYVSK 592
Cdd:PRK12911 1044 FSSMFTALFMTK 1055
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
236-579 |
5.73e-21 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 95.71 E-value: 5.73e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 236 DKEVMSQTLTTLRSRIEELGITEAVTQRQGKQRIRIELPGVqDPTEAKRIIGataSLGFYQLKAVggqtfnlqsggTIKL 315
Cdd:PRK08343 61 TQETMDLVVEILESRLNALGLKDIKVYPVGDQYIVVEVPGV-DADTAKEIIE---KQGVFEARIQ-----------TPGN 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 316 DPVPIFTGEHINNA-----HAGRDDWSKPlVQLSLDsqggdAMSAFSKANIGKPMATVYSEYsqnaKGEVVKKSEVINVA 390
Cdd:PRK08343 126 NNETVLTGDDIESVgspsqDPSGGAWGVP-FTLSED-----GAEKFAEVAKGKGATDDPSGH----PLDMYLDGELIYAA 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 391 NIAQHLSSRFSITNMQSPQAAADLALLLRA-----------GSLSAPVTIVHEQTIGPSLGSENISNGLAALMLGMgITL 459
Cdd:PRK08343 196 PLSPDLASGLASGPVVITVGSTGTTEEAKEeakelyihlrsGALPVKLDIEGSGSVSPSLGEQFKKGSLIAGLLAL-LAV 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 460 AFM-AMWYRRLGL--------IANVALILNLTSLVGLMsllpgvvLTLPGIAGLVLTIGMAVDTNVIIF-ERIKEERRKG 529
Cdd:PRK08343 275 ALVvFLRYREPRIalpmvitsLSEVIIILGFAALIGWQ-------LDLASIAGIIAVIGTGVDDLIIITdEVLHEGKVPS 347
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1942001571 530 RAPYQAieqGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALG 579
Cdd:PRK08343 348 RKVFLS---RIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILG 394
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
427-592 |
6.31e-16 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 76.11 E-value: 6.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 427 VTIVHEQTIGPSLGSENISNGLAALMLGMGITLAFMAMWYR-RLGLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGLV 505
Cdd:pfam02355 13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEwRFALGAIIALAHDVIITVGVFSLF-GIEVDLATVAALL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 506 LTIGMAVDTNVIIFERIKEERRK--GRAPYQAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTS 583
Cdd:pfam02355 92 TIIGYSVNDTVVVFDRVRENLRKktRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVG 171
|
....*....
gi 1942001571 584 MFTGVYVSK 592
Cdd:pfam02355 172 TYSSIFIAS 180
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
426-605 |
8.00e-15 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 75.47 E-value: 8.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 426 PVTIVHEQTIGPSLGSENISNGLAALMLGMGITLAFMAMWYR-RLGLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGL 504
Cdd:COG0341 114 DVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEwRFAVGAVVALLHDVLITLGIFSLF-GLEFDLTFIAAL 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 505 vLTI-GMAV-DTnVIIFERIKEERRKGRapyqaieqgyKQAFGTIFDANI------------TTMITALILYGIGYGPVK 570
Cdd:COG0341 193 -LTIiGYSLnDT-VVVFDRIRENLRKYR----------KMTLAEIINLSInqtlsrtintslTTLLVVLALLFFGGETLR 260
|
170 180 190
....*....|....*....|....*....|....*
gi 1942001571 571 GFAITLALGLVTSMFTGVYVSKvlsqSLYLKLGKK 605
Cdd:COG0341 261 DFALALLIGIIVGTYSSIFIAS----PLLLWLGKR 291
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
457-595 |
1.59e-13 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 74.04 E-value: 1.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 457 ITLAFMAMWYRRLGLIANVaLILNLTSLVGLMSLLPGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERRKGRAPYQ-A 535
Cdd:NF037998 457 AIMIYLLFAYRLLGLFAII-IALTSISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKNKRSIEeS 535
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 536 IEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTGVYVSKVLS 595
Cdd:NF037998 536 FKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMI 595
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
451-586 |
4.74e-13 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 72.20 E-value: 4.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 451 LMLGMGITLAFMAMWYRRL--GLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERRK 528
Cdd:COG1033 224 FPLALLLILLLLFLFFRSLrgVLLPLLVVLLAVIWTLGLMGLL-GIPLSPLTILVPPLLLAIGIDYGIHLLNRYREERRK 302
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1942001571 529 GRAPYQAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFT 586
Cdd:COG1033 303 GLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLT 360
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
427-591 |
1.66e-12 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 67.68 E-value: 1.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 427 VTIVHEQTIGPSLGSENISNGLAALMLGMGITLAFMAMWY-RRLGLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGLV 505
Cdd:TIGR00966 80 AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFeWRFALGAIVALVHDVIITVGVYSLF-GIEVNLTTVAALL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 506 LTIGMAVDTNVIIFERIKEERRK--GRAPYQAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTS 583
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRKytRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238
|
....*...
gi 1942001571 584 MFTGVYVS 591
Cdd:TIGR00966 239 TYSSIFIA 246
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
439-586 |
3.15e-12 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 69.50 E-value: 3.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 439 LGSENISNGLAALMLGMGITLAFMAMWYR--RLGLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNV 516
Cdd:COG1033 599 INESVIESQIRSLLLALLLIFLLLLLAFRslRLGLISLIPNLLPILLTFGLMGLL-GIPLNIATAVVASIALGIGVDYTI 677
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 517 IIFERIKEERRKGRAPYQAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFT 586
Cdd:COG1033 678 HFLSRYREERRKGGDLEEAIRRALRTTGKAILFTSLTLAAGFGVLLFSSFPPLADFGLLLALGLLVALLA 747
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
389-601 |
3.29e-12 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 67.57 E-value: 3.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 389 VANIAQHLSSRFSITNMQSPQAAADLALLLRAGSLSAPVTIVHEQTIGPSLGSENISNGLAALMLGMGITLAFMAMWYR- 467
Cdd:PRK13021 70 VSVISASEPGRWVLRYAPADTAQSNVDIQQALAPLGTEVQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEw 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 468 RLGLIANVALILNLTSLVGLMSLLPgVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEE-RRKGRAPYQAI-EQGYKQAFG 545
Cdd:PRK13021 150 RLASGALFALVHDVIFVLAFFALTQ-MEFNLTVLAAVLAILGYSLNDSIIIADRIRELlIAKPKLAIQEInNQAIVATFS 228
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1942001571 546 TIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTGVYVSKVLSQSLYLK 601
Cdd:PRK13021 229 RTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLS 284
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
426-590 |
1.70e-10 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 64.10 E-value: 1.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 426 PVTIVHEQTIGPSLGSENISNGLAAL---MLGMGITLAFMAMWYRRLGLIanVALILNLTSLVGLMSLLpGVVLTLPGIA 502
Cdd:PRK13024 558 GGTIPSSETVGPTVGKELARNAIIAVliaLIGILLYILIRFEWTFSLGAI--LALLHDVLIVIGFFSLF-RLEVDLTFIA 634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 503 GLVLTIGMAVDTNVIIFERIKEERRKGR-APY-QAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGL 580
Cdd:PRK13024 635 AILTIIGYSINDTVVVFDRIRENLRLYKkKDLrEIVNKSINQTLSRTINTSLTTLLVLLALLIFGGSSLRNFSLALLVGL 714
|
170
....*....|
gi 1942001571 581 VTSMFTGVYV 590
Cdd:PRK13024 715 IVGTYSSIFI 724
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
341-562 |
1.91e-09 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 59.17 E-value: 1.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 341 VQLSLDSQGGDAMSAFS--------KANIGKPMATVYSEYSQNAKGEVVKKSEVINVANIAQHLSSRFSITnmqspqaaa 412
Cdd:PRK08578 42 VKLGIDFTGGTEITIQTndaspdelESALSGEPGVDVRKGSGNGYIITFGSGDDTDVDKLADAVKEFFNVD--------- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 413 dlalllragslSAPVTIVHEQTIGPSLGSENISNGLAAL---MLGMGITLAFMamwYRRLglIANVALILNLTS----LV 485
Cdd:PRK08578 113 -----------SISELNYSEKQIGPTFGSQFQEQALKAVgfaFIGMAVVVFLI---FRTP--VPSLAVILSAFSdiiiAL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1942001571 486 GLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKeeRRKGRapyqaIEQGYKQAFGTIFDANITTMITALILY 562
Cdd:PRK08578 177 ALMNLF-GIELSLATVAALLMLIGYSVDSDILLTTRVL--KRRGT-----FDESIKRAMRTGITMTLTTIAAMAVLY 245
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
432-597 |
2.16e-09 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 60.62 E-value: 2.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 432 EQTIGPSLGsenISNGLAALMLGMGITLAFMAMWYRRLGLianVALILNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMA 511
Cdd:TIGR00921 188 EREFGKDMG---TTMAISGILVVLVLLLDFKRWWRPLLPL---VIILFGVAWVLGIMGWL-GIPLYATTLLAVPMLIGVG 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 512 VDTNVIIFERIKEERRKGRAPYQAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTGVYVS 591
Cdd:TIGR00921 261 IDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVL 340
|
....*.
gi 1942001571 592 KVLSQS 597
Cdd:TIGR00921 341 PALLQS 346
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
444-606 |
9.74e-07 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 52.03 E-value: 9.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 444 ISNGLAALMLGMGITLAFMAMWyrRLGLIANVALilnLTSLVG---LMSLLpGV---VLTLpgiAGLVLTIGMAVDTNVI 517
Cdd:COG0841 334 VKTLLEAILLVVLVVFLFLRSW--RATLIPAVAI---PVSLIGtfaVMYLL-GFslnILTL---FALVLAIGIVVDDAIV 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 518 IFERIKEERRKGRAPYQAIEQGYKQAFGTIFDANITTM---ITALILYGI-G--YGPvkgFAITLALGLVTSMFTGVYVS 591
Cdd:COG0841 405 VVENIERHMEEGLSPLEAAIKGAREVAGAVIASTLTLVavfLPLAFMGGItGqlFRQ---FALTVAIALLISLFVALTLT 481
|
170
....*....|....*
gi 1942001571 592 KVLSqSLYLKLGKKS 606
Cdd:COG0841 482 PALC-ARLLKPHPKG 495
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
450-594 |
3.22e-06 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 50.63 E-value: 3.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 450 ALMLGMGITLAFMAMWYR-RLGLIANVALILNLTS----LVGLMSLLPGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKE 524
Cdd:PRK12911 1239 ALFGALGIILLYVSLRFEwRYAFSAICALIHDLLAtcavLVALHFFLQKIQIDLQAIGALMTVLGYSLNNTLIIFDRIRE 1318
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1942001571 525 ERR-KGRAPYQA-IEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTGVYVSKVL 594
Cdd:PRK12911 1319 DRQeKLFTPMPIlINDALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPL 1390
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
433-601 |
3.97e-06 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 50.00 E-value: 3.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 433 QTIGPSLGSENISNGLAALMLGM-GItlaFMAMWYR---RLGLIANVALILNLTSLVGlMSLLPGVVLTLPGIAGLVLTI 508
Cdd:PRK13023 566 DVVGPTVSEQLSRAGVLAVILSLiGI---FIYVWFRfrwQLALGAVLSTLHDVVILSG-MFIVFRMEFNLWSVAAILTII 641
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 509 GMAVDTNVIIFERIKEE-RRKGRAPYQAI-EQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFT 586
Cdd:PRK13023 642 GYSLNDTVVIYDRVRENlRRYKSAPLPAIiDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYS 721
|
170
....*....|....*
gi 1942001571 587 GVYVSKVLSQSLYLK 601
Cdd:PRK13023 722 SIFIAAPLLVQFGLK 736
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
450-585 |
1.74e-05 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 47.29 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 450 ALMLGMGITLAF--MAMWYRrlGLIAnvALILNLTSLVGLMSLLpGVVLTLPGIAGL-----------VLTIGMAVDTNV 516
Cdd:pfam03176 145 GLIEAVTLVVIFiiLLIVYR--SVVA--ALLPLLTVGLSLGAAQ-GLVAILAHILGIglstfalnllvVLLIAVGTDYAL 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1942001571 517 IIFERIKEERRKGRAPYQAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMF 585
Cdd:pfam03176 220 FLVSRYREELRAGEDREEAVIRAVRGTGKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVL 288
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
448-588 |
1.98e-05 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 47.84 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 448 LAALMLGMGITLAFMAMWYRrlGLIAnvALILNLTSLVGLMSLLPGV-----VLTLPGIA-GLVLTIGMAVDTNVIIF-- 519
Cdd:COG2409 172 GRAELITLPVALVVLLLVFR--SLVA--ALLPLLTAGLAVGVALGLLallaaFTDVSSFApNLLTMLGLGVGIDYALFlv 247
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1942001571 520 ERIKEERRKGRAPYQAIEQGYKQAFGTIFDANITTMI--TALILYGIGYgpVKGFAITLALGLVTSMFTGV 588
Cdd:COG2409 248 SRYREELRAGEDREEAVARAVATAGRAVLFSGLTVAIalLGLLLAGLPF--LRSMGPAAAIGVAVAVLAAL 316
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
441-594 |
1.51e-04 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 44.98 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 441 SENISNGLAALMLGMGITLAF--MAMWYRRLGLIANVALILNLTSLVGLMSL-LPGVVLTLPGIAGLVLTIGMAVDTNVI 517
Cdd:pfam00873 856 QEQLAGNSLPILIALALLVVFlvLAALYESWSDPLSIMLTVPLALVGALLALwLRGLPNSVYAQVGLILLIGLAVKNAIL 935
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 518 IFERIKEERR-KGRAPYQAIEQGYKQAFGTIFdanITTMITAL------ILYGIGYGPVKGFAITLALGLVTSMFTGVYV 590
Cdd:pfam00873 936 MVEFANELREqEGKSLEEAILEACRLRLRPIL---MTALAAILgvlplaLSTGAGSELQQPLGIVVFGGLVTSTVLTLLV 1012
|
....
gi 1942001571 591 SKVL 594
Cdd:pfam00873 1013 VPVF 1016
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
481-594 |
2.00e-04 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 44.58 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 481 LTSLVGLMSLLPGVVLTLPGIAGL-----------------VLTIGMAVDTNVIIFERIKEERRKGRAPYQAIEQGYKQA 543
Cdd:TIGR00833 198 ITMLVPLVSVGFSVVVAQGIVSLLgipgligvnaqttvlltALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGT 277
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1942001571 544 FGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTGVYVSKVL 594
Cdd:TIGR00833 278 GKAILGSALTVAVAFLALSLARLPSFKTLGVSCAVGVLVALLNAVTLTPAL 328
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
442-590 |
2.09e-04 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 44.32 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 442 ENISNGLAALMLGMGITLAFMAMWYRRLG--LIANVALILnltSLVG--LMSLLPGVVLTLPGIAGLVLTIGMAVDTNVI 517
Cdd:COG0841 848 ESFSSLGLAFLLALLLVYLVLAAQFESFIqpLIILLTVPL---ALIGalLGLLLTGTPLNIYSQIGLIMLIGIVVKNAIL 924
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1942001571 518 IFERIKEERRKGRAPYQAIEQGYKQAFGTIFdanITTMITAL----ILYGIGYGPV--KGFAITLALGLVTSMFTGVYV 590
Cdd:COG0841 925 LVDFANQLREEGMSLREAILEAARLRLRPIL---MTSLATILgllpLALGTGAGAEfrQPLGIAVIGGLLFSTLLTLFV 1000
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
435-591 |
2.91e-04 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 43.94 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 435 IGPSLGSENISNGLAALMLGMGITLAFMamWYR---RLGLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMA 511
Cdd:PRK14726 662 VGPAVSGELTMAATLGVLAALAAILIYI--WIRfewQFAVGAIIATLHDVILTLGLFVLT-GIEFNLTSIAAILTIVGYS 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 512 VDTNVIIFERIKEE-RRKGRAPY-QAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTGVY 589
Cdd:PRK14726 739 LNDTVVVYDRVRENlRRYKKMPLpILIDASINQTLSRTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIY 818
|
..
gi 1942001571 590 VS 591
Cdd:PRK14726 819 IA 820
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
453-607 |
6.43e-04 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 43.05 E-value: 6.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 453 LGMGITLAFMAM------WyrRLGLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEE- 525
Cdd:pfam00873 337 LLEAIVLVILVMflflqnW--RATLIPAIAIPLSLLGTFAVMKAF-GFSINTLTLGGLVLAIGLVVDDAIVVVENIERVl 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 526 RRKGRAPYQAIEQGYKQAFGTIFdaNITTMITALILYGIGYGPVKG-----FAITLALGLVTSMFTGVYVSKVLSqSLYL 600
Cdd:pfam00873 414 EENGLKPLEAAYKSMGEIGGALV--AIALVLSAVFLPILFLGGLTGrifrqFAITIVLAILLSVLVALTLTPALC-ATLL 490
|
....*..
gi 1942001571 601 KLGKKSG 607
Cdd:pfam00873 491 KPRREPK 497
|
|
| PRK09577 |
PRK09577 |
multidrug efflux RND transporter permease subunit; |
461-598 |
2.43e-03 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169981 [Multi-domain] Cd Length: 1032 Bit Score: 40.99 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 461 FMAMWYRRLGLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIkeER---RKGRAPYQAIE 537
Cdd:PRK09577 355 FLFMQNFRATLIPTLVVPVALLGTFGVMLAA-GFSINVLTMFGMVLAIGILVDDAIVVVENV--ERlmvEEGLSPYDATV 431
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1942001571 538 QGYKQAFGTIfdANITTMITALIL----YGIGYGPV-KGFAITLALGLVTSMFTGVYVSKVLSQSL 598
Cdd:PRK09577 432 KAMKQISGAI--VGITVVLTSVFVpmafFGGAVGNIyRQFALSLAVSIGFSAFLALSLTPALCATL 495
|
|
| PRK09579 |
PRK09579 |
multidrug efflux RND transporter permease subunit; |
457-583 |
6.08e-03 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169983 [Multi-domain] Cd Length: 1017 Bit Score: 39.82 E-value: 6.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 457 ITLAFMAMWYRRLGLIANVALILNLTSLVGLMSLLpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERRKGRAPYQAI 536
Cdd:PRK09579 345 IVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMM-GYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAA 423
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1942001571 537 EQGYKQAFGTIFDANIT-TMITALI--LYGIGYGPVKGFAITLALGLVTS 583
Cdd:PRK09579 424 LEGAREIAMPVVSMTITlAAVYAPIgfLTGLTGALFKEFALTLAGAVIIS 473
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
448-585 |
7.57e-03 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 39.44 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 448 LAALMLGMGITLAFMAMWYRRLGLIANVALILNLTSLVGLMsllpGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEErR 527
Cdd:TIGR00921 575 AGAILVLMILLAVFRNPIKAVFPLIAIGSGILWAIGLMGLR----GIPSFLAMATTISIILGLGMDYSIHLAERYFEE-R 649
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1942001571 528 KGRAPYQAIEQGYKQAFGTIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMF 585
Cdd:TIGR00921 650 KEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLT 707
|
|
| rplP0 |
PRK04019 |
acidic ribosomal protein P0; Validated |
122-185 |
8.66e-03 |
|
acidic ribosomal protein P0; Validated
Pssm-ID: 179712 [Multi-domain] Cd Length: 330 Bit Score: 38.69 E-value: 8.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942001571 122 LQSFGLSPIKLGLDLNG----GVLF---VLDVDLDKaIDEQLVSAYQQAKSI-------------IIKQKAHG-VKALQT 180
Cdd:PRK04019 172 LQKLGIKPIEVGLDLKAayedGVIYtpeVLAIDEEK-YRSDIQEAAQNAFNLavnaayptpetleTLIQKAFReAKALAV 250
|
....*
gi 1942001571 181 QTGFV 185
Cdd:PRK04019 251 EAGIV 255
|
|
| |
