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Conserved domains on  [gi|1941728097|ref|WP_197083027|]
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MULTISPECIES: flagellar motor switch protein FliN [Chromobacterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fliN super family cl32254
flagellar motor switch protein FliN; Validated
 1-126 1.81e-49

flagellar motor switch protein FliN; Validated


The actual alignment was detected with superfamily member PRK07963:

Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 154.18  E-value: 1.81e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941728097   1 MDD-WAAAMAEQEvvdAAPEAVPAQNLFQELGAStSGAGVPQNLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELD 79
Cdd:PRK07963   15 MDDlWAEALNEQK---ATSSKSAADAVFQQLGGG-DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1941728097  80 GMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRRLQK 126
Cdd:PRK07963   91 GLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
 
Name Accession Description Interval E-value
fliN PRK07963
flagellar motor switch protein FliN; Validated
 1-126 1.81e-49

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 154.18  E-value: 1.81e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941728097   1 MDD-WAAAMAEQEvvdAAPEAVPAQNLFQELGAStSGAGVPQNLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELD 79
Cdd:PRK07963   15 MDDlWAEALNEQK---ATSSKSAADAVFQQLGGG-DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1941728097  80 GMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRRLQK 126
Cdd:PRK07963   91 GLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 6-116 3.80e-34

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 116.64  E-value: 3.80e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941728097   6 AAMAEQEVVDAAPEAVPAQNLFQELGASTSGAGVPQNLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEP 85
Cdd:COG1886    62 LDLLLEVGGLLLLGSDEEPAEFEPLEDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEP 141

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1941728097  86 MDVLVNGCLIAQGEVVVVNDKFGIRLTDIIT 116
Cdd:COG1886   142 VDILVNGRLIARGEVVVVDDRFGVRITEIVS 172
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 42-118 2.37e-33

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 111.15  E-value: 2.37e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1941728097  42 NLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPA 118
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDSS 77
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 51-116 1.40e-21

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 81.23  E-value: 1.40e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1941728097  51 VQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIIT 116
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
 
Name Accession Description Interval E-value
fliN PRK07963
flagellar motor switch protein FliN; Validated
 1-126 1.81e-49

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 154.18  E-value: 1.81e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941728097   1 MDD-WAAAMAEQEvvdAAPEAVPAQNLFQELGAStSGAGVPQNLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELD 79
Cdd:PRK07963   15 MDDlWAEALNEQK---ATSSKSAADAVFQQLGGG-DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1941728097  80 GMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRRLQK 126
Cdd:PRK07963   91 GLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
fliN PRK08983
flagellar motor switch protein FliN;
1-125 4.83e-48

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 150.29  E-value: 4.83e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941728097   1 MDDWAAAMAEQEVVDAapEAVPAQNLfQELGASTSGAGVpQNLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDG 80
Cdd:PRK08983    7 ADDWAAAMAEQALEEA--LAAELDEL-VDDSAPITEDEA-RKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDR 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1941728097  81 MAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRRLQ 125
Cdd:PRK08983   83 VAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK 127
fliN PRK05698
flagellar motor switch protein FliN;
2-125 1.32e-47

flagellar motor switch protein FliN;


Pssm-ID: 168189 [Multi-domain]  Cd Length: 155  Bit Score: 149.95  E-value: 1.32e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941728097   2 DDWAAAMAEQEVVDAAPEAVPAQNLFQELGASTSGAGVPQNLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGM 81
Cdd:PRK05698   32 DDIDALLGADAGAEPSGPRAPMEEFGSSPKPNEPVSLEGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRL 111

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1941728097  82 AGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRRLQ 125
Cdd:PRK05698  112 AGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR 155
PRK08119 PRK08119
flagellar motor switch protein; Validated
 10-124 5.42e-46

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 152.32  E-value: 5.42e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941728097  10 EQEVVDAAPEAVPAQnlFQELGASTSGAGVPQNLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVL 89
Cdd:PRK08119  269 EPEKEAQPVNVQPAQ--FQSFDPPPLATTEPRNLDLILDVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDIL 346

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1941728097  90 VNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRRL 124
Cdd:PRK08119  347 VNGKLIAKGEVVVIDENFGVRITDIVSQSERIKSL 381
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 6-116 3.80e-34

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 116.64  E-value: 3.80e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941728097   6 AAMAEQEVVDAAPEAVPAQNLFQELGASTSGAGVPQNLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEP 85
Cdd:COG1886    62 LDLLLEVGGLLLLGSDEEPAEFEPLEDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEP 141

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1941728097  86 MDVLVNGCLIAQGEVVVVNDKFGIRLTDIIT 116
Cdd:COG1886   142 VDILVNGRLIARGEVVVVDDRFGVRITEIVS 172
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 42-118 2.37e-33

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 111.15  E-value: 2.37e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1941728097  42 NLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPA 118
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDSS 77
PRK08916 PRK08916
flagellar motor switch protein FliN;
35-115 1.08e-23

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 87.89  E-value: 1.08e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941728097  35 SGAGVPQNLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDI 114
Cdd:PRK08916   31 QADRTAADLEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVLVEDRLGVTMTEI 110


                  .
gi 1941728097 115 I 115
Cdd:PRK08916  111 I 111
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 51-116 1.40e-21

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 81.23  E-value: 1.40e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1941728097  51 VQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIIT 116
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
PRK08432 PRK08432
flagellar motor switch protein FliY; Validated
 15-126 1.31e-18

flagellar motor switch protein FliY; Validated


Pssm-ID: 236264 [Multi-domain]  Cd Length: 283  Bit Score: 78.51  E-value: 1.31e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941728097  15 DAAPEAVPAQNLFQELGASTSgAGVPQNLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCL 94
Cdd:PRK08432  173 EGEETTDSASEEIKTHKASLS-NEEIKNINMILDVKLPVRVRIGQKKMLLKDVLSMDIGSVVELNQLANDPLEILVDDKV 251

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1941728097  95 IAQGEVVVVNDKFGIRLTDIITPAERIRRLQK 126
Cdd:PRK08432  252 IAKGEVVIVDGNFGIQITEIGTKKERLEQLKH 283
PRK08433 PRK08433
flagellar motor switch protein FliN;
38-115 1.24e-16

flagellar motor switch protein FliN;


Pssm-ID: 181423 [Multi-domain]  Cd Length: 111  Bit Score: 69.78  E-value: 1.24e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1941728097  38 GVPQNLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDII 115
Cdd:PRK08433   21 ELICDYENLLDIEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVELYINGRIIGKGEVMVYEKNLAIRINEIL 98
PRK06782 PRK06782
flagellar motor switch protein; Reviewed
 5-115 2.66e-16

flagellar motor switch protein; Reviewed


Pssm-ID: 235861 [Multi-domain]  Cd Length: 528  Bit Score: 73.33  E-value: 2.66e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1941728097   5 AAAMAEQEVVDAAPEAVPAQNLfQELGASTSGAGVPQNLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGE 84
Cdd:PRK06782  419 EEEEIATEEIEPEKVVEPVVQP-IEFKEVKQMEPVYMDTSILQDVPMNVKVVFGSTKKTIQDILSLQENEVVVLDEDIDE 497

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1941728097  85 PMDVLVNGCLIAQGEVVVVNDKFGIRLTDII 115
Cdd:PRK06782  498 PIRIYVNGVLVAYGELVNVDGFFGVKVTKSL 528
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
46-119 8.26e-13

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 63.26  E-value: 8.26e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1941728097  46 ILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPAE 119
Cdd:COG1868   252 LEEAEVELSAELGETEITLRELLNLKVGDVIPLDKKVDDPLTVYVGGVPKFEGKPGVSNGRLAVKITEIIEEEE 325
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
 48-112 4.66e-10

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 55.49  E-value: 4.66e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1941728097  48 DIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLT 112
Cdd:TIGR02551 232 QLPVTLEFELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGVRIL 296
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
48-112 6.67e-09

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 52.05  E-value: 6.67e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1941728097  48 DIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLT 112
Cdd:PRK06933  236 QLPVQVSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRVE 300
PRK06033 PRK06033
flagellar motor switch protein FliN;
51-112 2.12e-07

flagellar motor switch protein FliN;


Pssm-ID: 180359 [Multi-domain]  Cd Length: 83  Bit Score: 45.14  E-value: 2.12e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1941728097  51 VQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLT 112
Cdd:PRK06033    9 VELMVVLGRSSMPIHQVLRMGRGAVIPLDATEADEVWILANNHPIARGEVLIDRNRIAVEVT 70
fliM PRK06666
flagellar motor switch protein FliM; Validated
 46-119 1.52e-06

flagellar motor switch protein FliM; Validated


Pssm-ID: 235849 [Multi-domain]  Cd Length: 337  Bit Score: 45.60  E-value: 1.52e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1941728097  46 ILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPAE 119
Cdd:PRK06666  255 VQQAEVELVAELGEIKLTLSEILNLKVGDVIPLEKPADDPLIVYVDGKPKFLCQYGKSNGRKALQIEELIEREL 328
PRK05933 PRK05933
type III secretion system protein; Validated
 52-114 2.96e-06

type III secretion system protein; Validated


Pssm-ID: 180315 [Multi-domain]  Cd Length: 372  Bit Score: 44.84  E-value: 2.96e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1941728097  52 QLTVELGRTKIAIRNLLQLAQGSVVELDGM-AGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDI 114
Cdd:PRK05933  309 KLVAEVARYSLSVGEFLKLGPGSILQFDGVhPTLGVDIILNGAKVGRGEIIALGDVLGIRVLEV 372
PRK06788 PRK06788
flagellar motor switch protein; Validated
 42-114 5.20e-06

flagellar motor switch protein; Validated


Pssm-ID: 180693 [Multi-domain]  Cd Length: 119  Bit Score: 42.56  E-value: 5.20e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1941728097  42 NLDMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDI 114
Cdd:PRK06788   27 HIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
PRK06789 PRK06789
flagellar motor switch protein; Validated
 48-114 7.56e-06

flagellar motor switch protein; Validated


Pssm-ID: 180694 [Multi-domain]  Cd Length: 74  Bit Score: 41.01  E-value: 7.56e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1941728097  48 DIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDI 114
Cdd:PRK06789    6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKMYVEIVEL 72
PRK08035 PRK08035
YscQ/HrcQ family type III secretion apparatus protein;
48-112 5.44e-05

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181204 [Multi-domain]  Cd Length: 323  Bit Score: 40.95  E-value: 5.44e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1941728097  48 DIPVQLTVELGRTKIAIRNLLQLAQGSVVELDG-MAGEPMdVLVNGCLIAQGEVVVVNDKFGIRLT 112
Cdd:PRK08035  250 QLPQQVVMEIGRLSLPIGQLRQLAVGDVLPVGGcFYPEVT-IRLNGRIIGQGELLACDNELMVRIT 314
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
48-111 8.12e-05

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 40.62  E-value: 8.12e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1941728097  48 DIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRL 111
Cdd:PRK08158  229 QLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGVEI 292
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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