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Conserved domains on  [gi|1941152090|gb|QPO14665|]
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ribosomal protein S16, partial (chloroplast) [Agrostula truncatula]

Protein Classification

30S ribosomal protein S16( domain architecture ID 1903205)

30S ribosomal protein S16 is a ribosomal protein that may have a cation-dependent endonuclease activity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsP super family cl42308
30S ribosomal protein S16; Provisional
 1-53 2.83e-30

30S ribosomal protein S16; Provisional


The actual alignment was detected with superfamily member CHL00005:

Pssm-ID: 478112  Cd Length: 82  Bit Score: 100.87  E-value: 2.83e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1941152090  1 GRDLQKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVYDILRKAELFKEKER 53
Cdd:CHL00005  30 GRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKELSL 82
 
Name Accession Description Interval E-value
rps16 CHL00005
ribosomal protein S16
 1-53 2.83e-30

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 100.87  E-value: 2.83e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1941152090  1 GRDLQKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVYDILRKAELFKEKER 53
Cdd:CHL00005  30 GRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKELSL 82
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 1-48 1.34e-16

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 66.11  E-value: 1.34e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1941152090  1 GRDLQKVGFYDPIKNQ--TCLNVPAILYFLEKGAQPTRTVYDILRKAELF 48
Cdd:TIGR00002 29 GRYIEELGFYNPITKEdlVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-45 6.24e-12

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 53.90  E-value: 6.24e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1941152090  1 GRDLQKVGFYDPIKN--QTCLNVPAILYFLEKGAQPTRTVYDILRKA 45
Cdd:COG0228   30 GRFIERIGFYNPLTNpaRIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
Ribosomal_S16 pfam00886
Ribosomal protein S16;
1-35 3.64e-08

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 44.29  E-value: 3.64e-08
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1941152090  1 GRDLQKVGFYDPIKN----QTCLNVPAILYFLEKGAQPT 35
Cdd:pfam00886 23 GRFIEELGTYNPLAEpgepRVKLDEERIKYWLGVGAQPT 61
 
Name Accession Description Interval E-value
rps16 CHL00005
ribosomal protein S16
 1-53 2.83e-30

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 100.87  E-value: 2.83e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1941152090  1 GRDLQKVGFYDPIKNQTCLNVPAILYFLEKGAQPTRTVYDILRKAELFKEKER 53
Cdd:CHL00005  30 GRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKELSL 82
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 1-48 1.34e-16

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 66.11  E-value: 1.34e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1941152090  1 GRDLQKVGFYDPIKNQ--TCLNVPAILYFLEKGAQPTRTVYDILRKAELF 48
Cdd:TIGR00002 29 GRYIEELGFYNPITKEdlVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-45 6.24e-12

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 53.90  E-value: 6.24e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1941152090  1 GRDLQKVGFYDPIKN--QTCLNVPAILYFLEKGAQPTRTVYDILRKA 45
Cdd:COG0228   30 GRFIERIGFYNPLTNpaRIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
Ribosomal_S16 pfam00886
Ribosomal protein S16;
1-35 3.64e-08

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 44.29  E-value: 3.64e-08
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1941152090  1 GRDLQKVGFYDPIKN----QTCLNVPAILYFLEKGAQPT 35
Cdd:pfam00886 23 GRFIEELGTYNPLAEpgepRVKLDEERIKYWLGVGAQPT 61
rpsP PRK14521
30S ribosomal protein S16; Provisional
 1-49 2.23e-07

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 44.38  E-value: 2.23e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1941152090   1 GRDLQKVGFYDPIKN--QTCLNVPAILYFLEKGAQPTRTVYDIL-RKAELFK 49
Cdd:PRK14521   31 GKFIEKIGTYNPNTNpaTVDLNFDRAVYWLMNGAQPTDTARNILsYEGVLLK 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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