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Conserved domains on  [gi|194018474|ref|NP_001005214|]
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leucine-rich repeat-containing protein 52 precursor [Homo sapiens]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
35-185 1.18e-15

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 76.90  E-value: 1.18e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474  35 QEVICTGKQLTEYPLDIPLNT--RRLFLNENRITSLPAmHLGLLSDLVYLDCQNNRIREvMDYTFIGVFKLIYLDLSSNN 112
Cdd:COG4886  139 KELDLSNNQLTDLPEPLGNLTnlKSLDLSNNQLTDLPE-ELGNLTNLKELDLSNNQITD-LPEPLGNLTNLEELDLSGNQ 216

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 194018474 113 LTSIsPFTFSVLSNLVQLNIANNPhLLSLhkFTFANTTSLRYLDLRNTGLQTLDSaaLYHLTTLETLFLSGNP 185
Cdd:COG4886  217 LTDL-PEPLANLTNLETLDLSNNQ-LTDL--PELGNLTNLEELDLSNNQLTDLPP--LANLTNLKTLDLSNNQ 283
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
35-185 1.18e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 76.90  E-value: 1.18e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474  35 QEVICTGKQLTEYPLDIPLNT--RRLFLNENRITSLPAmHLGLLSDLVYLDCQNNRIREvMDYTFIGVFKLIYLDLSSNN 112
Cdd:COG4886  139 KELDLSNNQLTDLPEPLGNLTnlKSLDLSNNQLTDLPE-ELGNLTNLKELDLSNNQITD-LPEPLGNLTNLEELDLSGNQ 216

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 194018474 113 LTSIsPFTFSVLSNLVQLNIANNPhLLSLhkFTFANTTSLRYLDLRNTGLQTLDSaaLYHLTTLETLFLSGNP 185
Cdd:COG4886  217 LTDL-PEPLANLTNLETLDLSNNQ-LTDL--PELGNLTNLEELDLSNNQLTDLPP--LANLTNLKTLDLSNNQ 283
LRR_8 pfam13855
Leucine rich repeat;
79-136 1.36e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 50.60  E-value: 1.36e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 194018474   79 LVYLDCQNNRIREVMDYTFIGVFKLIYLDLSSNNLTSISPFTFSVLSNLVQLNIANNP 136
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 58-184 2.56e-08

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 53.25  E-value: 2.56e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474  58 LFLNENRITSLPAMHlgLLSDLVYLDCQNNRIREVMDYTFigVFKLIYLDLSSNNLTSISPftFSVLSNLVQLNIANN-- 135
Cdd:cd21340    7 LYLNDKNITKIDNLS--LCKNLKVLYLYDNKITKIENLEF--LTNLTHLYLQNNQIEKIEN--LENLVNLKKLYLGGNri 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 194018474 136 ---------PHLLSLH----------KFTFANTT------SLRYLDLRNTGLQTLDSaaLYHLTTLETLFLSGN 184
Cdd:cd21340   81 svveglenlTNLEELHienqrlppgeKLTFDPRSlaalsnSLRVLNISGNNIDSLEP--LAPLRNLEQLDASNN 152
LRRNT smart00013
Leucine rich repeat N-terminal domain;
26-55 9.18e-05

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 38.84  E-value: 9.18e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 194018474    26 CPNNCLCQAQEVICTGKQLTEYPLDIPLNT 55
Cdd:smart00013   2 CPAPCNCSGTAVDCSGRGLTEVPLDLPPDT 31
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 54-135 1.13e-04

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 43.68  E-value: 1.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474  54 NTRRLFLNENRITSLPAMHLGLLSDLVYLDCQNNRIREVMDYTFIGVFKLIYLDLSSNNLTSISPFTFSVLSNLVQLNIA 133
Cdd:PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555


                 ..
gi 194018474 134 NN 135
Cdd:PLN00113 556 QN 557
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
35-185 1.18e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 76.90  E-value: 1.18e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474  35 QEVICTGKQLTEYPLDIPLNT--RRLFLNENRITSLPAmHLGLLSDLVYLDCQNNRIREvMDYTFIGVFKLIYLDLSSNN 112
Cdd:COG4886  139 KELDLSNNQLTDLPEPLGNLTnlKSLDLSNNQLTDLPE-ELGNLTNLKELDLSNNQITD-LPEPLGNLTNLEELDLSGNQ 216

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 194018474 113 LTSIsPFTFSVLSNLVQLNIANNPhLLSLhkFTFANTTSLRYLDLRNTGLQTLDSaaLYHLTTLETLFLSGNP 185
Cdd:COG4886  217 LTDL-PEPLANLTNLETLDLSNNQ-LTDL--PELGNLTNLEELDLSNNQLTDLPP--LANLTNLKTLDLSNNQ 283
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
54-184 1.11e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 64.95  E-value: 1.11e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474  54 NTRRLFLNENRitslpamHLGLLSDLVYLDCQNNRIREvMDYTFIGVFKLIYLDLSSNNLTSIsPFTFSVLSNLVQLNIA 133
Cdd:COG4886   97 NLTELDLSGNE-------ELSNLTNLESLDLSGNQLTD-LPEELANLTNLKELDLSNNQLTDL-PEPLGNLTNLKSLDLS 167

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 194018474 134 NNPhLLSLHKFtFANTTSLRYLDLRNTGLQTLdSAALYHLTTLETLFLSGN 184
Cdd:COG4886  168 NNQ-LTDLPEE-LGNLTNLKELDLSNNQITDL-PEPLGNLTNLEELDLSGN 215
LRR_8 pfam13855
Leucine rich repeat;
79-136 1.36e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 50.60  E-value: 1.36e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 194018474   79 LVYLDCQNNRIREVMDYTFIGVFKLIYLDLSSNNLTSISPFTFSVLSNLVQLNIANNP 136
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 58-184 2.56e-08

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 53.25  E-value: 2.56e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474  58 LFLNENRITSLPAMHlgLLSDLVYLDCQNNRIREVMDYTFigVFKLIYLDLSSNNLTSISPftFSVLSNLVQLNIANN-- 135
Cdd:cd21340    7 LYLNDKNITKIDNLS--LCKNLKVLYLYDNKITKIENLEF--LTNLTHLYLQNNQIEKIEN--LENLVNLKKLYLGGNri 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 194018474 136 ---------PHLLSLH----------KFTFANTT------SLRYLDLRNTGLQTLDSaaLYHLTTLETLFLSGN 184
Cdd:cd21340   81 svveglenlTNLEELHienqrlppgeKLTFDPRSlaalsnSLRVLNISGNNIDSLEP--LAPLRNLEQLDASNN 152
LRR_8 pfam13855
Leucine rich repeat;
125-185 2.94e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 49.45  E-value: 2.94e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 194018474  125 SNLVQLNIANNpHLLSLHKFTFANTTSLRYLDLRNTGLQTLDSAALYHLTTLETLFLSGNP 185
Cdd:pfam13855   1 PNLRSLDLSNN-RLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
LRR_8 pfam13855
Leucine rich repeat;
102-162 7.27e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 48.29  E-value: 7.27e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 194018474  102 KLIYLDLSSNNLTSISPFTFSVLSNLVQLNIANNpHLLSLHKFTFANTTSLRYLDLRNTGL 162
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNN-LLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
35-227 7.28e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 50.32  E-value: 7.28e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474  35 QEVICTGKQLTEYPLDIPLNT--RRLFLNENRITSLPAmhLGLLSDLVYLDCQNNRIREVMDYTFIGvfKLIYLDLSSNN 112
Cdd:COG4886  208 EELDLSGNQLTDLPEPLANLTnlETLDLSNNQLTDLPE--LGNLTNLEELDLSNNQLTDLPPLANLT--NLKTLDLSNNQ 283

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474 113 LTSISPFTFSVLSNLVQLNIANNPHLLSLHKFTFANTTSLRYLDLRNTGLQTLDSAALYHLTTLETLFLSGNPWKCNCSF 192
Cdd:COG4886  284 LTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLL 363

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 194018474 193 LDFAIFLIVFHMDPSDDLNATCVEPTELTGWPITR 227
Cdd:COG4886  364 TLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTA 398
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 56-159 1.40e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 48.24  E-value: 1.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474  56 RRLFLNENRITSLPamHLGLLSDL--VYLDCQNNRIREVM---DYTFIGVFK-LIYLDLSSNNLTSISPftFSVLSNLVQ 129
Cdd:cd21340   71 KKLYLGGNRISVVE--GLENLTNLeeLHIENQRLPPGEKLtfdPRSLAALSNsLRVLNISGNNIDSLEP--LAPLRNLEQ 146

                         90       100       110
                 ....*....|....*....|....*....|..
gi 194018474 130 LNIANNpHLLSLHKF--TFANTTSLRYLDLRN 159
Cdd:cd21340  147 LDASNN-QISDLEELldLLSSWPSLRELDLTG 177
LRR_8 pfam13855
Leucine rich repeat;
54-113 7.90e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.82  E-value: 7.90e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474   54 NTRRLFLNENRITSLPAMHLGLLSDLVYLDCQNNRIREVMDYTFIGVFKLIYLDLSSNNL 113
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRRNT smart00013
Leucine rich repeat N-terminal domain;
26-55 9.18e-05

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 38.84  E-value: 9.18e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 194018474    26 CPNNCLCQAQEVICTGKQLTEYPLDIPLNT 55
Cdd:smart00013   2 CPAPCNCSGTAVDCSGRGLTEVPLDLPPDT 31
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 54-135 1.13e-04

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 43.68  E-value: 1.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474  54 NTRRLFLNENRITSLPAMHLGLLSDLVYLDCQNNRIREVMDYTFIGVFKLIYLDLSSNNLTSISPFTFSVLSNLVQLNIA 133
Cdd:PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555


                 ..
gi 194018474 134 NN 135
Cdd:PLN00113 556 QN 557
LRRNT pfam01462
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 26-52 2.16e-04

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 396168 [Multi-domain]  Cd Length: 28  Bit Score: 37.99  E-value: 2.16e-04
                          10        20
                  ....*....|....*....|....*..
gi 194018474   26 CPNNCLCQAQEVICTGKQLTEYPLDIP 52
Cdd:pfam01462   2 CPVPCHCSATVVNCSDRGLTAVPRDLP 28
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
102-185 2.45e-04

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 42.23  E-value: 2.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474 102 KLIYLDLSSNNLTSISPFTFSVLSNLVQLNIANNPHLLSLhkftfantTSLRYLDLRNTGLQTLDsAALYHLTTLETLFL 181
Cdd:COG4886   73 LLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNL--------TNLESLDLSGNQLTDLP-EELANLTNLKELDL 143


                 ....
gi 194018474 182 SGNP 185
Cdd:COG4886  144 SNNQ 147
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 102-141 2.97e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 38.00  E-value: 2.97e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 194018474  102 KLIYLDLSSNNLTSISPftFSVLSNLVQLNIANNPHLLSL 141
Cdd:pfam12799   2 NLEVLDLSNNQITDIPP--LAKLPNLETLDLSGNNKITDL 39
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
2-93 4.45e-04

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 42.07  E-value: 4.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474   2 SLASGPGPGWLLFSFGMGLVSGSKCPNNClcqaQEVICTGKQLTEYPLdIPLNTRRLFLNENRITSLPAMHLGLLSDLVY 81
Cdd:PRK15387 356 SLPTLPSELYKLWAYNNRLTSLPALPSGL----KELIVSGNRLTSLPV-LPSELKELMVSGNRLTSLPMLPSGLLSLSVY 430

                         90
                 ....*....|..
gi 194018474  82 LDcQNNRIREVM 93
Cdd:PRK15387 431 RN-QLTRLPESL 441
LRR_5 pfam13306
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich ...
 86-177 1.77e-03

BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.


Pssm-ID: 463839 [Multi-domain]  Cd Length: 127  Bit Score: 37.91  E-value: 1.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474   86 NNRIREVMDYTFIGvFKLIYLDLSSNnLTSISPFTFSVLSNLVQLNIANNphLLSLHKFTFANtTSLRYLDLRNTgLQTL 165
Cdd:pfam13306  42 PSSLTSIGSYAFYN-CSLTSITIPSS-LTSIGEYAFSNCSNLKSITLPSN--LTSIGSYAFSN-CSLKSITIPSS-VTTI 115

                          90
                  ....*....|..
gi 194018474  166 DSAALYHLTTLE 177
Cdd:pfam13306 116 GSYAFSNCSNLK 127
LRR_5 pfam13306
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich ...
 94-184 2.78e-03

BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.


Pssm-ID: 463839 [Multi-domain]  Cd Length: 127  Bit Score: 37.14  E-value: 2.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194018474   94 DYTFIGVfKLIYLDLSsNNLTSISPFTFSVLSNLVQLNIANNphLLSLHKFTFANtTSLRYLDLrNTGLQTLDSAALYHL 173
Cdd:pfam13306   5 SYAFYNC-SLTSITIP-SSLTSIGEYAFSNCTSLKSITLPSS--LTSIGSYAFYN-CSLTSITI-PSSLTSIGEYAFSNC 78

                          90
                  ....*....|.
gi 194018474  174 TTLETLFLSGN 184
Cdd:pfam13306  79 SNLKSITLPSN 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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