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Conserved domains on  [gi|1940121754|gb|QPN00093|]
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cytochrome b, partial (mitochondrion) [Arvicanthis niloticus]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-360 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 731.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00100   13 IINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00100   93 CLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00100  173 ATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGD 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00100  253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADL 332

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILILMPIAGMI 360
Cdd:MTH00100  333 LTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLI 372
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-360 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 731.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00100   13 IINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00100   93 CLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00100  173 ATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGD 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00100  253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADL 332

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILILMPIAGMI 360
Cdd:MTH00100  333 LTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLI 372
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-360 1.86e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 376.05  E-value: 1.86e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   4 HSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLF 83
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  84 LHVGRGMYYGSYTF---LeTWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:COG1290   105 LHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGD 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPTG----LNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFP 235
Cdd:COG1290   184 ATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 236 DllGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLY 313
Cdd:COG1290   264 I--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALG 341

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1940121754 314 WMLVANLFILTWIGGQPVehPFIIIGQLASISYFSIILILMPIAGMI 360
Cdd:COG1290   342 VAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFI 386
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-194 7.16e-94

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 278.48  E-value: 7.16e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:cd00284     5 EVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSY--TFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 158
Cdd:cd00284    85 MLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSV 164

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1940121754 159 DKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 194
Cdd:cd00284   165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
6-192 5.00e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 258.08  E-value: 5.00e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   6 FIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLH 85
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  86 VGRGMYYG--SYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 163
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1940121754 164 TRFFAFHFILPFIITALVIVHLLFLHETG 192
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 217-327 4.00e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.11  E-value: 4.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 217 ILGALIMFTLLMILVlffPDLLGDPdnympANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMH 296
Cdd:TIGR01156  44 ILGTIACVVGLAVLD---PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1940121754 297 T-SKQRSLIFRPITQTLYwmLVANLFILtWIG 327
Cdd:TIGR01156 116 NvNKFQNPFRRPVATTVF--LFGTVVAL-WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-360 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 731.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00100   13 IINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00100   93 CLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00100  173 ATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGD 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00100  253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADL 332

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILILMPIAGMI 360
Cdd:MTH00100  333 LTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLI 372
CYTB MTH00119
cytochrome b; Provisional
 1-360 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 666.60  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00119   14 IINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00119   94 CIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDN 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00119  174 PTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGD 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00119  254 PENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANL 333

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILILMPIAGMI 360
Cdd:MTH00119  334 LILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGAL 373
CYTB MTH00131
cytochrome b; Provisional
 1-360 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 651.33  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00131   13 IANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00131   93 CIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDN 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00131  173 ATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGD 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00131  253 PDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADV 332

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILILMPIAGMI 360
Cdd:MTH00131  333 LILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWL 372
CYTB MTH00074
cytochrome b; Provisional
 1-360 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 637.88  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00074   14 IINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00074   94 CIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDK 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00074  174 ATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGD 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00074  254 PDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANT 333

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILILMPIAGMI 360
Cdd:MTH00074  334 LILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWL 373
CYTB MTH00191
cytochrome b; Provisional
 1-356 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 619.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00191   10 IVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFI 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00191   90 CIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDN 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00191  170 ATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGD 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00191  250 PENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANF 329

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILILMPI 356
Cdd:MTH00191  330 ILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-354 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 604.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00156    3 IINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00156   83 CIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDN 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00156  163 ATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGD 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00156  243 PENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIV 322

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILILM 354
Cdd:MTH00156  323 ILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-360 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 573.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00034   13 ILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00034   93 CLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDN 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00034  173 ATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALND 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00034  253 PENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATF 332

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILILMPIAGMI 360
Cdd:MTH00034  333 FILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYL 372
CYTB MTH00145
cytochrome b; Provisional
 1-353 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 572.62  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00145   14 VVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00145   94 CIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGN 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00145  174 ATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGD 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00145  254 PENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNF 333

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILIL 353
Cdd:MTH00145  334 FILTWIGACPVEEPYETIGQVFTVLYFLFFLIL 366
CYTB MTH00016
cytochrome b; Validated
 1-360 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 539.65  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00016   14 IMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00016   94 CLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDN 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00016  174 ATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGD 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00016  254 PENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNF 333

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILIlMPIAGMI 360
Cdd:MTH00016  334 LLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMI-NPLLMKL 372
CYTB MTH00053
cytochrome b; Provisional
 1-358 6.15e-177

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 496.15  E-value: 6.15e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00053   14 LVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00053   94 CVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSN 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00053  174 ATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGD 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00053  254 AENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDF 333

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILILMPIAG 358
Cdd:MTH00053  334 FLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAG 371
CYTB MTH00022
cytochrome b; Validated
 1-360 1.22e-175

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 492.68  E-value: 1.22e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00022   12 IVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00022   92 CLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00022  172 ATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGD 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00022  252 PENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDF 331

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILILMPIAGMI 360
Cdd:MTH00022  332 ILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGEL 371
CYTB MTH00224
cytochrome b; Provisional
 1-352 1.62e-173

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 487.51  E-value: 1.62e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00224   14 ILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00224   94 FIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDN 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGD 240
Cdd:MTH00224  174 ATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTD 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 241 PDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANL 320
Cdd:MTH00224  254 PENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSW 333

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1940121754 321 FILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00224  334 AILTWIGGRPVEDPFEGIGQVFTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 7-360 1.70e-136

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 393.92  E-value: 1.70e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   7 IDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLHV 86
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  87 GRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 166
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 167 FAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVL--FFPDLLGDPDNY 244
Cdd:MTH00033  176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENF 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 245 MPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANLFILT 324
Cdd:MTH00033  256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1940121754 325 WIGGQPV-EHPFIIIGQLASISYFSIILILMPIAGMI 360
Cdd:MTH00033  336 WIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYL 372
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-360 1.86e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 376.05  E-value: 1.86e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   4 HSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLF 83
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  84 LHVGRGMYYGSYTF---LeTWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:COG1290   105 LHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGD 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPTG----LNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFP 235
Cdd:COG1290   184 ATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 236 DllGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLY 313
Cdd:COG1290   264 I--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALG 341

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1940121754 314 WMLVANLFILTWIGGQPVehPFIIIGQLASISYFSIILILMPIAGMI 360
Cdd:COG1290   342 VAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFI 386
CYTB MTH00086
cytochrome b; Provisional
 7-354 5.13e-118

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 345.77  E-value: 5.13e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   7 IDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLHV 86
Cdd:MTH00086    8 VTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHI 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  87 GRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 166
Cdd:MTH00086   88 FKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFF 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 167 FAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGaLIMFTLLMILVLFFPDLLGDPDNYMP 246
Cdd:MTH00086  168 FVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIE 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 247 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQrslIFRPITQTLYWMLVANLFILTWI 326
Cdd:MTH00086  247 ADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVILSWL 323

                         330       340
                  ....*....|....*....|....*...
gi 1940121754 327 GGQPVEHPFIIIGQLASISYFSIILILM 354
Cdd:MTH00086  324 GQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-194 7.16e-94

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 278.48  E-value: 7.16e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:cd00284     5 EVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSY--TFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 158
Cdd:cd00284    85 MLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSV 164

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1940121754 159 DKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 194
Cdd:cd00284   165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 1-352 1.95e-89

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 272.63  E-value: 1.95e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFI 80
Cdd:MTH00046    4 LIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  81 CLFLHVGRGMYYGSYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00046   84 LLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 161 ATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGL-NSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLG 239
Cdd:MTH00046  164 VTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVL 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 240 DPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSkqrslIFRPITQTLYWMLVAN 319
Cdd:MTH00046  244 DIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLWVPTFNGSS-----VYSVWRQVNFWLIVSL 318

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1940121754 320 LFILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00046  319 FFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
6-192 5.00e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 258.08  E-value: 5.00e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754   6 FIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLH 85
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  86 VGRGMYYG--SYTFLETWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 163
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1940121754 164 TRFFAFHFILPFIITALVIVHLLFLHETG 192
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 195-342 3.49e-51

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 167.44  E-value: 3.49e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 195 NPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVLFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPN 274
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1940121754 275 KLGGVLALILSILILALLPFMHTSKQRSLiFRPITQTLYWMLVANLFILTWIGGQPVEHPFIIIGQLA 342
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
76-241 1.09e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 153.94  E-value: 1.09e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  76 SMFFICLFLHVGRGMYYGSYTFLE--TWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 153
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 154 GGFSVDKATLTRFFAFHF-ILPFIITALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGALIMFTLLMILVL 232
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1940121754 233 FFPDLLGDP 241
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 21-196 3.60e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 141.39  E-value: 3.60e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  21 FGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGSYTFLE- 99
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 100 -TWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 177
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1940121754 178 TALVIVHLLFLHETGSNNP 196
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
246-346 1.33e-37

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 130.68  E-value: 1.33e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 246 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMHTSKQRSLIFRPITQTLYWMLVANLFILTW 325
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1940121754 326 IGGQPVEHPFIIIGQLASISY 346
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
petB CHL00070
cytochrome b6
 12-196 9.25e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 124.06  E-value: 9.25e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  12 PSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMY 91
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754  92 YGSYTFLE--TWNIGVMLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAF 169
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 1940121754 170 H-FILPFIITALVIVHLLFLHETGSNNP 196
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 217-327 6.71e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 54.41  E-value: 6.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 217 ILGALIMFTLLMI--LVLFFPDLLGDPdnympANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPF 294
Cdd:COG5679    40 IFPVVILGTIALCigLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1940121754 295 MHT-SKQRSLIFRPITQTLYwmLVANLFILtWIG 327
Cdd:COG5679   115 IENvNKFQNPFRRPVATAVF--LFGTLVTL-WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 217-327 4.00e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.11  E-value: 4.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 217 ILGALIMFTLLMILVlffPDLLGDPdnympANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFMH 296
Cdd:TIGR01156  44 ILGTIACVVGLAVLD---PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1940121754 297 T-SKQRSLIFRPITQTLYwmLVANLFILtWIG 327
Cdd:TIGR01156 116 NvNKFQNPFRRPVATTVF--LFGTVVAL-WLG 144
petD CHL00058
cytochrome b6/f complex subunit IV
 217-313 4.57e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 51.93  E-value: 4.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1940121754 217 ILGAlimFTLLMILVLFFPDLLGDPdnympANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPFM- 295
Cdd:CHL00058   44 ILGT---IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                          90
                  ....*....|....*...
gi 1940121754 296 HTSKQRSLIFRPITQTLY 313
Cdd:CHL00058  116 NVNKFQNPFRRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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