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Conserved domains on  [gi|1938952786]
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Chain i, CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ubiq-Cytc-red_N super family cl07693
Ubiquinol-cytochrome c reductase 8 kDa, N-terminal; Members of this family adopt a structure ...
 1-64 6.59e-14

Ubiquinol-cytochrome c reductase 8 kDa, N-terminal; Members of this family adopt a structure consisting of many antiparallel beta sheets, with few alpha helices, in a non-globular arrangement. They are required for proper functioning of the respiratory chain.


The actual alignment was detected with superfamily member pfam09165:

Pssm-ID: 462698  Cd Length: 75  Bit Score: 59.68  E-value: 6.59e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1938952786  1 VLSATSRGVAGALRPLVQAAVPATsESPVLDLKRSVLCRESLRGQAAGRPLVASVSLNVPASVR 64
Cdd:pfam09165 13 YLKATAQAVANGLKPLVPAVVVKA-EKVLVPPKPKFLCRESLSGQLPTNGLAVSVGINVPAQVR 75
 
Name Accession Description Interval E-value
Ubiq-Cytc-red_N pfam09165
Ubiquinol-cytochrome c reductase 8 kDa, N-terminal; Members of this family adopt a structure ...
 1-64 6.59e-14

Ubiquinol-cytochrome c reductase 8 kDa, N-terminal; Members of this family adopt a structure consisting of many antiparallel beta sheets, with few alpha helices, in a non-globular arrangement. They are required for proper functioning of the respiratory chain.


Pssm-ID: 462698  Cd Length: 75  Bit Score: 59.68  E-value: 6.59e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1938952786  1 VLSATSRGVAGALRPLVQAAVPATsESPVLDLKRSVLCRESLRGQAAGRPLVASVSLNVPASVR 64
Cdd:pfam09165 13 YLKATAQAVANGLKPLVPAVVVKA-EKVLVPPKPKFLCRESLSGQLPTNGLAVSVGINVPAQVR 75
 
Name Accession Description Interval E-value
Ubiq-Cytc-red_N pfam09165
Ubiquinol-cytochrome c reductase 8 kDa, N-terminal; Members of this family adopt a structure ...
 1-64 6.59e-14

Ubiquinol-cytochrome c reductase 8 kDa, N-terminal; Members of this family adopt a structure consisting of many antiparallel beta sheets, with few alpha helices, in a non-globular arrangement. They are required for proper functioning of the respiratory chain.


Pssm-ID: 462698  Cd Length: 75  Bit Score: 59.68  E-value: 6.59e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1938952786  1 VLSATSRGVAGALRPLVQAAVPATsESPVLDLKRSVLCRESLRGQAAGRPLVASVSLNVPASVR 64
Cdd:pfam09165 13 YLKATAQAVANGLKPLVPAVVVKA-EKVLVPPKPKFLCRESLSGQLPTNGLAVSVGINVPAQVR 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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