NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1938293755|ref|WP_196221532|]
View 

hypothetical protein, partial [Sansalvadorimonas verongulae]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Minor_tail_Z super family cl06020
Prophage minor tail protein Z (GPZ); This family consists of several prophage minor tail ...
 50-141 4.56e-04

Prophage minor tail protein Z (GPZ); This family consists of several prophage minor tail protein Z like sequences from Escherichia coli, Salmonella typhimurium and Lambda-like bacteriophages.


The actual alignment was detected with superfamily member pfam06763:

Pssm-ID: 284235  Cd Length: 190  Bit Score: 38.30  E-value: 4.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938293755  50 SGVRTGRYRWEGAFVFQPVNARSdMVFQRApawkhkkqvslkSGRTMWmglPIEKVALPIANSARQAVE-QLQPKLLERF 128
Cdd:pfam06763 109 SVLRIGKKLFRGGFIQQLKNGRW-HVMRRV------------SGKGRY---PINVVKIPLAAPLTQAFKtQVQSQMRQEM 172

                          90
                  ....*....|...
gi 1938293755 129 TTLMQQELNYVYR 141
Cdd:pfam06763 173 PKELGYALKQQLR 185
 
Name Accession Description Interval E-value
Minor_tail_Z pfam06763
Prophage minor tail protein Z (GPZ); This family consists of several prophage minor tail ...
 50-141 4.56e-04

Prophage minor tail protein Z (GPZ); This family consists of several prophage minor tail protein Z like sequences from Escherichia coli, Salmonella typhimurium and Lambda-like bacteriophages.


Pssm-ID: 284235  Cd Length: 190  Bit Score: 38.30  E-value: 4.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938293755  50 SGVRTGRYRWEGAFVFQPVNARSdMVFQRApawkhkkqvslkSGRTMWmglPIEKVALPIANSARQAVE-QLQPKLLERF 128
Cdd:pfam06763 109 SVLRIGKKLFRGGFIQQLKNGRW-HVMRRV------------SGKGRY---PINVVKIPLAAPLTQAFKtQVQSQMRQEM 172

                          90
                  ....*....|...
gi 1938293755 129 TTLMQQELNYVYR 141
Cdd:pfam06763 173 PKELGYALKQQLR 185
 
Name Accession Description Interval E-value
Minor_tail_Z pfam06763
Prophage minor tail protein Z (GPZ); This family consists of several prophage minor tail ...
 50-141 4.56e-04

Prophage minor tail protein Z (GPZ); This family consists of several prophage minor tail protein Z like sequences from Escherichia coli, Salmonella typhimurium and Lambda-like bacteriophages.


Pssm-ID: 284235  Cd Length: 190  Bit Score: 38.30  E-value: 4.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938293755  50 SGVRTGRYRWEGAFVFQPVNARSdMVFQRApawkhkkqvslkSGRTMWmglPIEKVALPIANSARQAVE-QLQPKLLERF 128
Cdd:pfam06763 109 SVLRIGKKLFRGGFIQQLKNGRW-HVMRRV------------SGKGRY---PINVVKIPLAAPLTQAFKtQVQSQMRQEM 172

                          90
                  ....*....|...
gi 1938293755 129 TTLMQQELNYVYR 141
Cdd:pfam06763 173 PKELGYALKQQLR 185
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH