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Conserved domains on  [gi|1935445335|ref|YP_009944955|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Chelonoidis duncanensis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009581)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.66e-62

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 185.89  E-value: 1.66e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   1 MNTTISIMIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAM 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1935445335  81 QLPHPTYSFTWALIILSLLTLGLVYEWIQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.66e-62

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 185.89  E-value: 1.66e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   1 MNTTISIMIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAM 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1935445335  81 QLPHPTYSFTWALIILSLLTLGLVYEWIQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 8.90e-34

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 112.52  E-value: 8.90e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335  19 MMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAMQLPH-PTYSFTWALIILS 97
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRElGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1935445335  98 LLTLGLVYEWIQGGLE 113
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-114 1.91e-27

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 97.11  E-value: 1.91e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   8 MIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAMQLPH-PT 86
Cdd:COG0838    12 LLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRElGW 89

                          90       100
                  ....*....|....*....|....*...
gi 1935445335  87 YSFTWALIILSLLTLGLVYEWIQGGLEW 114
Cdd:COG0838    90 FGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.66e-62

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 185.89  E-value: 1.66e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   1 MNTTISIMIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAM 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1935445335  81 QLPHPTYSFTWALIILSLLTLGLVYEWIQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 4.35e-61

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 182.39  E-value: 4.35e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   2 NTTISIMIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAMQ 81
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1935445335  82 LPHPTYSFTWALIILSLLTLGLVYEWIQGGLEWA 115
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 4-116 1.85e-57

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 173.26  E-value: 1.85e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   4 TISIMIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAMQLP 83
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1935445335  84 HPTYSFTWALIILSLLTLGLVYEWIQGGLEWAE 116
Cdd:MTH00069   82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-116 1.27e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 143.16  E-value: 1.27e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   1 MNTTISIMIiSLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAM 80
Cdd:MTH00106    1 MNLMLTLLT-NTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1935445335  81 QLPHPTYSFTWALIILSLLTLGLVYEWIQGGLEWAE 116
Cdd:MTH00106   80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 4.14e-44

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 139.35  E-value: 4.14e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   1 MNTTISIMIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAM 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1935445335  81 QLPHPTYSFTWALIILSLLTLGLVYEWIQGGLEWAE 116
Cdd:MTH00042   81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 4.48e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 129.25  E-value: 4.48e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   1 MNTTISIMIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAM 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1935445335  81 QLPHPtySFTWALIILSLLTLGLVYEWIQGGLEW 114
Cdd:MTH00203   81 QLSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 8.90e-34

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 112.52  E-value: 8.90e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335  19 MMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAMQLPH-PTYSFTWALIILS 97
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRElGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1935445335  98 LLTLGLVYEWIQGGLE 113
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 9.61e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 105.71  E-value: 9.61e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   1 MNTTISIMIISLTLSTILMMLnYWLTLMK--PDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPW 78
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLL-GLVLSKRsySDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQ 79

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1935445335  79 AMQLPHPTYSFTWALIILSLLTLGLVYEWIQGGLEWAE 116
Cdd:MTH00148   80 SLGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 7-114 5.31e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 103.64  E-value: 5.31e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   7 IMIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAMQLPHPT 86
Cdd:MTH00055   11 LLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQIG 88

                          90       100
                  ....*....|....*....|....*....
gi 1935445335  87 YSFTWALII-LSLLTLGLVYEWIQGGLEW 114
Cdd:MTH00055   89 LFGFWVMYLfLIILTIGLIYEWVKGGLEW 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 5-114 7.71e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 103.32  E-value: 7.71e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   5 ISIMIISLTLSTILMMLNYWLTL-MKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAMQLP 83
Cdd:MTH00161    3 LIILLIILLISIILMILASLLSKkSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTS 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1935445335  84 HPTYSFTWALIILSLLTLGLVYEWIQGGLEW 114
Cdd:MTH00161   83 NMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 7-114 2.59e-28

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 99.37  E-value: 2.59e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   7 IMIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAMQLPHPt 86
Cdd:MTH00018    6 LLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAP- 84

                          90       100
                  ....*....|....*....|....*...
gi 1935445335  87 YSFTWALIILSLLTLGLVYEWIQGGLEW 114
Cdd:MTH00018   85 FGFWTMVGFLFILTLGLIYEWIKGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 8-115 4.53e-28

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 98.78  E-value: 4.53e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   8 MIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAMQLPHPTY 87
Cdd:PRK06602   15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGW 92

                          90       100
                  ....*....|....*....|....*....
gi 1935445335  88 -SFTWALIILSLLTLGLVYEWIQGGLEWA 115
Cdd:PRK06602   93 lGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-114 1.91e-27

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 97.11  E-value: 1.91e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   8 MIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAMQLPH-PT 86
Cdd:COG0838    12 LLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRElGW 89

                          90       100
                  ....*....|....*....|....*...
gi 1935445335  87 YSFTWALIILSLLTLGLVYEWIQGGLEW 114
Cdd:COG0838    90 FGLIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 6.29e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 93.52  E-value: 6.29e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   1 MNTTISIMIISLTLSTILMMLNYWLTLMK-PDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSlMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1935445335  80 MQLPHPTYSFTWALIILSLLTLGLVYEWIQGGLEWAE 116
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 2.62e-23

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 86.84  E-value: 2.62e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   1 MNTTISIMIISLTLSTILMMLNYWLTLMKP-DNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTaDREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1935445335  80 MQLPHPTYSFTWALIILSLLTLGLVYEWIQGGLEWA 115
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 2-114 4.72e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 81.13  E-value: 4.72e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   2 NTTISIMIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAMQ 81
Cdd:MTH00030   11 STLLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIV 88

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1935445335  82 LPHPT-YSFTWALIILSLLTLGLVYEWIQGGLEW 114
Cdd:MTH00030   89 FNQLNlFSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 33-114 1.05e-13

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 62.31  E-value: 1.05e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335  33 EKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAMQLPH-PTYSFTWALIILSLLTLGLVYEWIQGG 111
Cdd:CHL00022   39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVlGVSAFIEALIFVLILIVGLVYAWRKGA 116


                  ...
gi 1935445335 112 LEW 114
Cdd:CHL00022  117 LEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 29-114 5.04e-12

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 57.76  E-value: 5.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335  29 KPDNEKLSPYECGFDPLESARLP--FSIRFFLVAILFLLFDLEIALLLPlpWAMQLPH-PTYSFTWALIILSLLTLGLVY 105
Cdd:PRK07928   32 RYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDAlGVFGLVEMALFMLTVFVAYAY 109


                  ....*....
gi 1935445335 106 EWIQGGLEW 114
Cdd:PRK07928  110 VWRRGGLEW 118
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
8-114 9.29e-11

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 54.75  E-value: 9.29e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   8 MIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAMQLPH-PT 86
Cdd:PRK07756   16 LLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFL--YPWAVAYDKlGL 93

                          90       100
                  ....*....|....*....|....*...
gi 1935445335  87 YSFTWALIILSLLTLGLVYEWIQGGLEW 114
Cdd:PRK07756   94 FALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
34-114 4.64e-10

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 53.13  E-value: 4.64e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335  34 KLSPYECGFDPLESARlPFSIRFFLVAILFLLFDLEIALLlpLPWAMQLPH-PTYSFTWALIILSLLTLGLVYEWIQGGL 112
Cdd:PRK08489   47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLlGLFGLIEMLLFIVLLTIGFIYAWKKGAL 123


                  ..
gi 1935445335 113 EW 114
Cdd:PRK08489  124 EW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 5-114 3.31e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 50.28  E-value: 3.31e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335   5 ISIMIISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLpwamqLPH 84
Cdd:MTH00092    5 IFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL-----LVS 79

                          90       100       110
                  ....*....|....*....|....*....|
gi 1935445335  85 PTYSFTWALIILSLLTLGLVYEWIQGGLEW 114
Cdd:MTH00092   80 DFSSLISFFMLMIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 31-114 4.37e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 42.19  E-value: 4.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335  31 DNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAMQLphpTYSFTWALIILSLLTLGLVYEWIQG 110
Cdd:MTH00060   34 GFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLL---FYNFWYYYFFLLLLFLGFVVELFSG 110


                  ....
gi 1935445335 111 GLEW 114
Cdd:MTH00060  111 YVRW 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 10-114 6.60e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 39.80  E-value: 6.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935445335  10 ISLTLSTILMMLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLlpLPWAMQLPH-PTYS 88
Cdd:PRK06432   39 ISLKTEDILKKAAYEDTPPGSDQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLL--FPWAFDFKRlGLIP 116

                          90       100
                  ....*....|....*....|....*.
gi 1935445335  89 FTWALIILSLLTLGLVYEWIQGGLEW 114
Cdd:PRK06432  117 FIETLIFLAMPLFAVYYAFKMGYMRW 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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