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Conserved domains on  [gi|1934898954|gb|QPF70002|]
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cytochrome b, partial (mitochondrion) [Crenimugil cf. seheli EV-2021]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-257 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 531.15  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00131  101 GLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFA 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00131  181 FHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPAN 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00131  261 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGG 340

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00131  341 MPVEHPFIIIGQVASVL 357
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-257 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 531.15  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00131  101 GLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFA 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00131  181 FHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPAN 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00131  261 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGG 340

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00131  341 MPVEHPFIIIGQVASVL 357
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-257 2.13e-85

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 259.72  E-value: 2.13e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYlyKE----TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLT 76
Cdd:COG1290   110 GFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLN 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  77 RFFAFH-FLLPFIILAMTLVHLIFLHETGSNNPLG----LNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNllG 151
Cdd:COG1290   188 RFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--N 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 152 DPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLV 229
Cdd:COG1290   266 PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFI 345

                         250       260
                  ....*....|....*....|....*...
gi 1934898954 230 ADVMILTWIGGMPveDPYIIIGQIASLL 257
Cdd:COG1290   346 VFFIVLTILGANP--PIATLLGSINTVT 371
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 107-254 1.64e-51

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 164.74  E-value: 1.64e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 107 NPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 186
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1934898954 187 KLGGVLALLCSILVLMVVPILHTSKHRSlTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIA 254
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
158-257 1.39e-47

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 153.02  E-value: 1.39e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 158 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTW 237
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|
gi 1934898954 238 IGGMPVEDPYIIIGQIASLL 257
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVY 100
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 158-230 1.15e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.88  E-value: 1.15e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1934898954 158 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHT-SKHRSLTFRPL--TQFFFWVLVA 230
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVatTVFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-257 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 531.15  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00131  101 GLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFA 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00131  181 FHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPAN 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00131  261 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGG 340

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00131  341 MPVEHPFIIIGQVASVL 357
CYTB MTH00119
cytochrome b; Provisional
 1-257 1.64e-176

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 490.57  E-value: 1.64e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00119  102 GLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFA 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00119  182 LHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPAN 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00119  262 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGS 341

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00119  342 QPVEHPFIIIGQLASIL 358
CYTB MTH00074
cytochrome b; Provisional
 1-257 4.35e-173

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 481.87  E-value: 4.35e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00074  102 GLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFA 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00074  182 FHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPAN 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00074  262 PLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGG 341

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00074  342 QPVEDPFIEIGQAASIL 358
CYTB MTH00100
cytochrome b; Provisional
 1-257 4.33e-170

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 474.13  E-value: 4.33e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00100  101 GLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFA 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00100  181 FHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPAN 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00100  261 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGG 340

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00100  341 QPVEHPFIIIGQLASIL 357
CYTB MTH00191
cytochrome b; Provisional
 1-257 9.28e-166

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 462.85  E-value: 9.28e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00191   98 GLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFT 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00191  178 FHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPAN 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00191  258 PLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGG 337

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00191  338 QPVEDPFILLGQISSFL 354
CYTB MTH00156
cytochrome b; Provisional
 1-257 2.70e-162

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 453.47  E-value: 2.70e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00156   91 GIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFT 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00156  171 FHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPAN 250

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00156  251 PLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGA 330

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00156  331 RPVEEPYILTGQILTIL 347
CYTB MTH00145
cytochrome b; Provisional
 1-257 2.49e-151

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 426.63  E-value: 2.49e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00145  102 GLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFS 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00145  182 LHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPAN 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00145  262 PMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGA 341

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00145  342 CPVEEPYETIGQVFTVL 358
CYTB MTH00034
cytochrome b; Validated
 1-257 4.96e-150

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 423.35  E-value: 4.96e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00034  101 GLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFA 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00034  181 FHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPAN 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00034  261 PLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGS 340

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00034  341 QPVEYPFILLGQVASVL 357
CYTB MTH00016
cytochrome b; Validated
 1-253 2.69e-140

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 398.67  E-value: 2.69e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00016  102 GIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFA 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00016  182 LHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPAN 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00016  262 PLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGG 341

                         250
                  ....*....|...
gi 1934898954 241 MPVEDPYIIIGQI 253
Cdd:MTH00016  342 RPVEPPYEFLGQI 354
CYTB MTH00022
cytochrome b; Validated
 1-257 1.94e-128

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 368.64  E-value: 1.94e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00022  100 GLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFS 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00022  180 LHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQAN 259

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00022  260 SLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGS 339

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00022  340 QVVEEPFILIGQLLSFF 356
CYTB MTH00053
cytochrome b; Provisional
 1-257 8.56e-128

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 367.11  E-value: 8.56e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00053  102 GIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYS 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00053  182 LHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQAN 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00053  262 PLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGG 341

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00053  342 QPVEEPYILIGQIASIF 358
CYTB MTH00224
cytochrome b; Provisional
 1-257 2.43e-124

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 358.46  E-value: 2.43e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00224  102 GLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFS 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00224  182 FHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMAN 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00224  262 PLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGG 341

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00224  342 RPVEDPFEGIGQVFTIL 358
CYTB MTH00033
cytochrome b; Provisional
 1-257 9.42e-96

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 285.68  E-value: 9.42e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00033   98 GLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFS 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALF--APNLLGDPDNFTP 158
Cdd:MTH00033  178 LHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEprIETLLQDPENFIQ 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 159 ANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWI 238
Cdd:MTH00033  258 ANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWI 337

                         250       260
                  ....*....|....*....|
gi 1934898954 239 GGMPV-EDPYIIIGQIASLL 257
Cdd:MTH00033  338 GSAPAgADPYVLIGRIATIF 357
CYTB MTH00086
cytochrome b; Provisional
 1-257 2.17e-87

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 263.34  E-value: 2.17e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00086   90 GLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFV 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFaILLIALASLALFAPNLLGDPDNFTPAN 160
Cdd:MTH00086  170 LHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEAD 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 161 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSkhrSLTFRPLTQFFFWVLVADVMILTWIGG 240
Cdd:MTH00086  249 PMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQ 325

                         250
                  ....*....|....*..
gi 1934898954 241 MPVEDPYIIIGQIASLL 257
Cdd:MTH00086  326 CLVEYPFLFLSQIFSFI 342
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-257 2.13e-85

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 259.72  E-value: 2.13e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYlyKE----TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLT 76
Cdd:COG1290   110 GFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLN 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  77 RFFAFH-FLLPFIILAMTLVHLIFLHETGSNNPLG----LNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNllG 151
Cdd:COG1290   188 RFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--N 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 152 DPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLV 229
Cdd:COG1290   266 PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFI 345

                         250       260
                  ....*....|....*....|....*...
gi 1934898954 230 ADVMILTWIGGMPveDPYIIIGQIASLL 257
Cdd:COG1290   346 VFFIVLTILGANP--PIATLLGSINTVT 371
CYTB MTH00046
cytochrome b; Validated
 1-257 2.91e-72

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 224.86  E-value: 2.91e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:MTH00046   92 ALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFS 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  81 FHFLLPFIILAMTLVHLIFLHETGSNNPLGL-NSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPA 159
Cdd:MTH00046  172 VHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEA 251

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 160 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLCSILVLMVVPilhtSKHRSLTFRPLTQFFFWVLVADVMILTWIG 239
Cdd:MTH00046  252 DPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLG 326

                         250
                  ....*....|....*...
gi 1934898954 240 GMPVEDPYIIIGQIASLL 257
Cdd:MTH00046  327 GCHPEYPYLLISQLFSVL 344
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 107-254 1.64e-51

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 164.74  E-value: 1.64e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 107 NPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 186
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1934898954 187 KLGGVLALLCSILVLMVVPILHTSKHRSlTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIA 254
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-106 2.20e-48

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 158.69  E-value: 2.20e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYGSY--LYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRF 78
Cdd:cd00284    93 GLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRF 172

                          90       100
                  ....*....|....*....|....*...
gi 1934898954  79 FAFHFLLPFIILAMTLVHLIFLHETGSN 106
Cdd:cd00284   173 FALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
158-257 1.39e-47

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 153.02  E-value: 1.39e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 158 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTW 237
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|
gi 1934898954 238 IGGMPVEDPYIIIGQIASLL 257
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVY 100
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-104 1.21e-44

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 148.68  E-value: 1.21e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   1 GLYYG--SYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRF 78
Cdd:pfam00033  84 GLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRF 163

                          90       100
                  ....*....|....*....|....*.
gi 1934898954  79 FAFHFLLPFIILAMTLVHLIFLHETG 104
Cdd:pfam00033 164 FSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
3-153 7.46e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 140.84  E-value: 7.46e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954   3 YYGSYLYKE--TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFA 80
Cdd:pfam13631  16 FTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYA 95

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1934898954  81 FHF-LLPFIILAMTLVHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDP 153
Cdd:pfam13631  96 LHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 12-109 8.97e-20

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 84.76  E-value: 8.97e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  12 TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFH-FLLPFIIL 90
Cdd:PRK03735  125 NWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALA 204

                          90
                  ....*....|....*....
gi 1934898954  91 AMTLVHLIFLHETGSNNPL 109
Cdd:PRK03735  205 VLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 12-109 5.27e-17

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 77.07  E-value: 5.27e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954  12 TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFH-FLLPFIIL 90
Cdd:CHL00070  117 TWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTA 196

                          90
                  ....*....|....*....
gi 1934898954  91 AMTLVHLIFLHETGSNNPL 109
Cdd:CHL00070  197 VFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 158-245 1.43e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 55.57  E-value: 1.43e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898954 158 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHT-SKHRSLTFRPLTQFFFWVLVADVMILT 236
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVATAVFLFGTLVTLWLG 145


                  ....*....
gi 1934898954 237 WIGGMPVED 245
Cdd:COG5679   146 IGAALPIDK 154
petD CHL00058
cytochrome b6/f complex subunit IV
 158-230 3.25e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 54.62  E-value: 3.25e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1934898954 158 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPIL-HTSKHRSLTFRP--LTQFFFWVLVA 230
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPvaTTVFLIGTAVA 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 158-230 1.15e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.88  E-value: 1.15e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1934898954 158 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHT-SKHRSLTFRPL--TQFFFWVLVA 230
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVatTVFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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