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Conserved domains on  [gi|1934898950|gb|QPF70000|]
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cytochrome b, partial (mitochondrion) [Crenimugil cf. seheli EV-2021]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-245 2.83e-180

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 499.56  E-value: 2.83e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00131  116 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATIL 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00131  196 HLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00131  276 FAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVAS 355


                  ....*
gi 1934898950 241 LLYFS 245
Cdd:MTH00131  356 VLYFS 360
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-245 2.83e-180

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 499.56  E-value: 2.83e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00131  116 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATIL 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00131  196 HLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00131  276 FAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVAS 355


                  ....*
gi 1934898950 241 LLYFS 245
Cdd:MTH00131  356 VLYFS 360
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-244 1.58e-83

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 254.33  E-value: 1.58e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFH-FLLPFIILAMTL 79
Cdd:COG1290   127 GVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVV 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  80 VHLIFLHETGSNNPLG----LNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNllGDPDNFTPANPLVTPPHIKP 155
Cdd:COG1290   207 LHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQP 284

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 156 EWYFLFAYAILRSIP--NKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPveDPYI 233
Cdd:COG1290   285 DWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIAT 362

                         250
                  ....*....|.
gi 1934898950 234 IIGQIASLLYF 244
Cdd:COG1290   363 LLGSINTVTYF 373
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 92-239 3.55e-51

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 163.59  E-value: 3.55e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  92 NPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 171
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1934898950 172 KLGGVLALLCSILVLMVVPILHTSKHRSlTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIA 239
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
143-243 1.95e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.94  E-value: 1.95e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 143 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTW 222
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1934898950 223 IGGMPVEDPYIIIGQIASLLY 243
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 143-215 1.40e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.49  E-value: 1.40e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1934898950 143 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHT-SKHRSLTFRPL--TQFFFWVLVA 215
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVatTVFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-245 2.83e-180

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 499.56  E-value: 2.83e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00131  116 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATIL 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00131  196 HLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00131  276 FAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVAS 355


                  ....*
gi 1934898950 241 LLYFS 245
Cdd:MTH00131  356 VLYFS 360
CYTB MTH00119
cytochrome b; Provisional
 1-245 1.39e-164

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 459.75  E-value: 1.39e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00119  117 GVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLI 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00119  197 HLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFL 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00119  277 FAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLAS 356


                  ....*
gi 1934898950 241 LLYFS 245
Cdd:MTH00119  357 ILYFT 361
CYTB MTH00074
cytochrome b; Provisional
 1-244 4.60e-161

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 451.06  E-value: 4.60e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00074  117 GVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASII 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00074  197 HLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFL 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00074  277 FAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAAS 356


                  ....
gi 1934898950 241 LLYF 244
Cdd:MTH00074  357 ILYF 360
CYTB MTH00100
cytochrome b; Provisional
 1-245 5.18e-159

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 445.62  E-value: 5.18e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00100  116 GIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMV 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00100  196 HLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00100  276 FAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLAS 355


                  ....*
gi 1934898950 241 LLYFS 245
Cdd:MTH00100  356 ILYFL 360
CYTB MTH00191
cytochrome b; Provisional
 1-245 9.38e-156

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 437.04  E-value: 9.38e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00191  113 GVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLI 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00191  193 HLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00191  273 FAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISS 352


                  ....*
gi 1934898950 241 LLYFS 245
Cdd:MTH00191  353 FLYFF 357
CYTB MTH00156
cytochrome b; Provisional
 1-245 5.31e-154

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 431.90  E-value: 5.31e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00156  106 GVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMI 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00156  186 HLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFL 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00156  266 FAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILT 345


                  ....*
gi 1934898950 241 LLYFS 245
Cdd:MTH00156  346 ILYFL 350
CYTB MTH00145
cytochrome b; Provisional
 1-245 2.63e-142

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 403.52  E-value: 2.63e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00145  117 GVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVL 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00145  197 HLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFL 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00145  277 FAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFT 356


                  ....*
gi 1934898950 241 LLYFS 245
Cdd:MTH00145  357 VLYFL 361
CYTB MTH00034
cytochrome b; Validated
 1-245 3.08e-141

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 400.62  E-value: 3.08e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00034  116 GVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSII 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00034  196 HLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00034  276 FAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVAS 355


                  ....*
gi 1934898950 241 LLYFS 245
Cdd:MTH00034  356 VLYFS 360
CYTB MTH00016
cytochrome b; Validated
 1-245 2.57e-131

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 375.55  E-value: 2.57e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00016  117 GVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMI 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00016  197 HLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFL 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00016  277 WAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFT 356


                  ....*
gi 1934898950 241 LLYFS 245
Cdd:MTH00016  357 VFYFF 361
CYTB MTH00053
cytochrome b; Provisional
 1-245 2.60e-122

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 352.86  E-value: 2.60e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00053  117 GVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALV 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00053  197 HLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFL 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00053  277 FAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIAS 356


                  ....*
gi 1934898950 241 LLYFS 245
Cdd:MTH00053  357 IFYFA 361
CYTB MTH00022
cytochrome b; Validated
 1-245 4.04e-122

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 352.08  E-value: 4.04e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00022  115 GVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIV 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00022  195 HLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFL 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00022  275 FAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLS 354


                  ....*
gi 1934898950 241 LLYFS 245
Cdd:MTH00022  355 FFYFF 359
CYTB MTH00224
cytochrome b; Provisional
 1-245 1.05e-116

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 338.43  E-value: 1.05e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00224  117 GVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATIL 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00224  197 HIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFL 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00224  277 WMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFT 356


                  ....*
gi 1934898950 241 LLYFS 245
Cdd:MTH00224  357 ILYFS 361
CYTB MTH00033
cytochrome b; Provisional
 1-244 3.48e-92

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 276.43  E-value: 3.48e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00033  113 GVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALF--APNLLGDPDNFTPANPLVTPPHIKPEWY 158
Cdd:MTH00033  193 HLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEprIETLLQDPENFIQANPLVTPVHIQPEWY 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 159 FLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPV-EDPYIIIGQ 237
Cdd:MTH00033  273 FLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGR 352


                  ....*..
gi 1934898950 238 IASLLYF 244
Cdd:MTH00033  353 IATIFYF 359
CYTB MTH00086
cytochrome b; Provisional
 1-244 2.75e-84

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 255.25  E-value: 2.75e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00086  105 GLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLF 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFaILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFL 160
Cdd:MTH00086  185 HLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFL 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 161 FAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSkhrSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIAS 240
Cdd:MTH00086  264 FAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFS 340


                  ....
gi 1934898950 241 LLYF 244
Cdd:MTH00086  341 FIYF 344
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-244 1.58e-83

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 254.33  E-value: 1.58e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFH-FLLPFIILAMTL 79
Cdd:COG1290   127 GVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVV 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  80 VHLIFLHETGSNNPLG----LNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNllGDPDNFTPANPLVTPPHIKP 155
Cdd:COG1290   207 LHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQP 284

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 156 EWYFLFAYAILRSIP--NKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPveDPYI 233
Cdd:COG1290   285 DWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIAT 362

                         250
                  ....*....|.
gi 1934898950 234 IIGQIASLLYF 244
Cdd:COG1290   363 LLGSINTVTYF 373
CYTB MTH00046
cytochrome b; Validated
 1-242 4.71e-65

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 205.99  E-value: 4.71e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:MTH00046  107 GFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVV 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  81 HLIFLHETGSNNPLGL-NSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYF 159
Cdd:MTH00046  187 HLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYF 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 160 LFAYAILRSIPNKLGGvLALLCSILVLMVVPilhtSKHRSLTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIA 239
Cdd:MTH00046  267 LAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLF 341


                  ...
gi 1934898950 240 SLL 242
Cdd:MTH00046  342 SVL 344
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 92-239 3.55e-51

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 163.59  E-value: 3.55e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950  92 NPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 171
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1934898950 172 KLGGVLALLCSILVLMVVPILHTSKHRSlTFRPLTQFFFWVLVADVMILTWIGGMPVEDPYIIIGQIA 239
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
143-243 1.95e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.94  E-value: 1.95e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 143 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHTSKHRSLTFRPLTQFFFWVLVADVMILTW 222
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1934898950 223 IGGMPVEDPYIIIGQIASLLY 243
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-91 3.19e-42

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 142.51  E-value: 3.19e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:cd00284   110 GVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVIL 189

                          90
                  ....*....|.
gi 1934898950  81 HLIFLHETGSN 91
Cdd:cd00284   190 HLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-89 1.71e-39

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 135.20  E-value: 1.71e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHFLLPFIILAMTLV 80
Cdd:pfam00033 101 GVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLL 180


                  ....*....
gi 1934898950  81 HLIFLHETG 89
Cdd:pfam00033 181 HLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-138 1.98e-38

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 131.59  E-value: 1.98e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFHF-LLPFIILAMTL 79
Cdd:pfam13631  31 GVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIV 110

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1934898950  80 VHLIFLHETGSNNPLGLNSDADKIPFHPYFTYKDLLGFAILLIALASLALFAPNLLGDP 138
Cdd:pfam13631 111 AHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-94 4.78e-18

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 79.76  E-value: 4.78e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFH-FLLPFIILAMTL 79
Cdd:PRK03735  129 GVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLML 208

                          90
                  ....*....|....*
gi 1934898950  80 VHLIFLHETGSNNPL 94
Cdd:PRK03735  209 AHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-94 1.95e-15

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 72.45  E-value: 1.95e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950   1 GVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGDSLVQWIWGGFSVDNATLTRFFAFH-FLLPFIILAMTL 79
Cdd:CHL00070  121 GVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFML 200

                          90
                  ....*....|....*
gi 1934898950  80 VHLIFLHETGSNNPL 94
Cdd:CHL00070  201 MHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 143-230 1.95e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 54.80  E-value: 1.95e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934898950 143 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHT-SKHRSLTFRPLTQFFFWVLVADVMILT 221
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVATAVFLFGTLVTLWLG 145


                  ....*....
gi 1934898950 222 WIGGMPVED 230
Cdd:COG5679   146 IGAALPIDK 154
petD CHL00058
cytochrome b6/f complex subunit IV
 143-215 4.13e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 53.85  E-value: 4.13e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1934898950 143 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPIL-HTSKHRSLTFRP--LTQFFFWVLVA 215
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPvaTTVFLIGTAVA 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 143-215 1.40e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.49  E-value: 1.40e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1934898950 143 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLCSILVLMVVPILHT-SKHRSLTFRPL--TQFFFWVLVA 215
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVatTVFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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