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Conserved domains on  [gi|1934222072|ref|WP_195440978|]
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IS1 family transposase [Klebsiella oxytoca]

Protein Classification

IS1595 family transposase; transposase( domain architecture ID 11466934)

IS1595 family transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism; transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
68-262 3.74e-10

Transposase InsA [Mobilome: prophages, transposons];


:

Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 59.88  E-value: 3.74e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934222072  68 CPGCGSVSLKRYGYSAQGERRMACRDCSKTFVI----PDSLTLTPRQQELAALIQQGSSLNDIRTLLAIDNTTLGRELAN 143
Cdd:COG3677    19 CPHCGSTRIVKNGKTRNGRQRYRCKDCGRTFTVttgtIFEGSKLPLWLQAIRLLLNGISLRQIARVLGVSYKTVWRWLHR 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934222072 144 LSYRADLAERAFDFPAFDIVLTTRAFSLGFNGGENRLYALVTAEEKSGKVVAISTNYTPRPVEPAYQYQSQYEERLPPGT 223
Cdd:COG3677    99 IREALDELVDEVDEGEGLVGEEDEKTKSKRRRKRGKKLVKGLKKGVVVKVRARGARKSKLAVRLELADLLLRRIILAALV 178

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1934222072 224 LAYLVQRKEMLTMRRRGAlfdIDYGPGTLHRHVRGMLVK 262
Cdd:COG3677   179 APLATDLAVGVDSKKHEL---LELARHTRRRRYRRLVRK 214
 
Name Accession Description Interval E-value
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
68-262 3.74e-10

Transposase InsA [Mobilome: prophages, transposons];


Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 59.88  E-value: 3.74e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934222072  68 CPGCGSVSLKRYGYSAQGERRMACRDCSKTFVI----PDSLTLTPRQQELAALIQQGSSLNDIRTLLAIDNTTLGRELAN 143
Cdd:COG3677    19 CPHCGSTRIVKNGKTRNGRQRYRCKDCGRTFTVttgtIFEGSKLPLWLQAIRLLLNGISLRQIARVLGVSYKTVWRWLHR 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934222072 144 LSYRADLAERAFDFPAFDIVLTTRAFSLGFNGGENRLYALVTAEEKSGKVVAISTNYTPRPVEPAYQYQSQYEERLPPGT 223
Cdd:COG3677    99 IREALDELVDEVDEGEGLVGEEDEKTKSKRRRKRGKKLVKGLKKGVVVKVRARGARKSKLAVRLELADLLLRRIILAALV 178

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1934222072 224 LAYLVQRKEMLTMRRRGAlfdIDYGPGTLHRHVRGMLVK 262
Cdd:COG3677   179 APLATDLAVGVDSKKHEL---LELARHTRRRRYRRLVRK 214
transpos_IS1 NF033558
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
 68-164 2.37e-07

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 50.73  E-value: 2.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934222072  68 CPGCGSVSLKRYGYSAQGERRMACRDCSKTFVipdsLTLTPR------QQELAALIQQGSSLNDIRTLLAIDNTTLGREL 141
Cdd:NF033558    1 CPRCQSDNVVKNGKSVRGKQRYRCKDCGRQFQ----LDYEYRgysegtKEKILQLYLNGMGFRAIARVLGVSHNTVLRWL 76

                          90       100
                  ....*....|....*....|...
gi 1934222072 142 ANLSYRADLAErafDFPAFDIVL 164
Cdd:NF033558   77 KKLGPRQVTPE---PLKPADIVL 96
 
Name Accession Description Interval E-value
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
68-262 3.74e-10

Transposase InsA [Mobilome: prophages, transposons];


Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 59.88  E-value: 3.74e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934222072  68 CPGCGSVSLKRYGYSAQGERRMACRDCSKTFVI----PDSLTLTPRQQELAALIQQGSSLNDIRTLLAIDNTTLGRELAN 143
Cdd:COG3677    19 CPHCGSTRIVKNGKTRNGRQRYRCKDCGRTFTVttgtIFEGSKLPLWLQAIRLLLNGISLRQIARVLGVSYKTVWRWLHR 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934222072 144 LSYRADLAERAFDFPAFDIVLTTRAFSLGFNGGENRLYALVTAEEKSGKVVAISTNYTPRPVEPAYQYQSQYEERLPPGT 223
Cdd:COG3677    99 IREALDELVDEVDEGEGLVGEEDEKTKSKRRRKRGKKLVKGLKKGVVVKVRARGARKSKLAVRLELADLLLRRIILAALV 178

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1934222072 224 LAYLVQRKEMLTMRRRGAlfdIDYGPGTLHRHVRGMLVK 262
Cdd:COG3677   179 APLATDLAVGVDSKKHEL---LELARHTRRRRYRRLVRK 214
transpos_IS1 NF033558
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
 68-164 2.37e-07

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 50.73  E-value: 2.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1934222072  68 CPGCGSVSLKRYGYSAQGERRMACRDCSKTFVipdsLTLTPR------QQELAALIQQGSSLNDIRTLLAIDNTTLGREL 141
Cdd:NF033558    1 CPRCQSDNVVKNGKSVRGKQRYRCKDCGRQFQ----LDYEYRgysegtKEKILQLYLNGMGFRAIARVLGVSHNTVLRWL 76

                          90       100
                  ....*....|....*....|...
gi 1934222072 142 ANLSYRADLAErafDFPAFDIVL 164
Cdd:NF033558   77 KKLGPRQVTPE---PLKPADIVL 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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