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MULTISPECIES: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [unclassified Holdemania]
aspartyl/glutamyl-tRNA amidotransferase subunit C( domain architecture ID 10002289)
aspartyl/glutamyl-tRNA synthase subunit C (GatC) is part of a heterotrimeric complex that forms correctly charged Gln-tRNA(Gln) or Asn-tRNA(Asn) through the transamidation of misacylated Glu-tRNA(Gln) or Asp-tRNA(Asn)
List of domain hits
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Name | Accession | Description | Interval | E-value | ||
GatC | COG0721 | Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and ... |
43-98 | 2.94e-15 | ||
Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]; Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases : Pssm-ID: 440485 [Multi-domain] Cd Length: 95 Bit Score: 64.73 E-value: 2.94e-15
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Name | Accession | Description | Interval | E-value | |||
GatC | COG0721 | Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and ... |
43-98 | 2.94e-15 | |||
Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]; Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases Pssm-ID: 440485 [Multi-domain] Cd Length: 95 Bit Score: 64.73 E-value: 2.94e-15
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Glu-tRNAGln | pfam02686 | Glu-tRNAGln amidotransferase C subunit; This is a family of Glu-tRNAGln amidotransferase C ... |
43-93 | 1.87e-14 | |||
Glu-tRNAGln amidotransferase C subunit; This is a family of Glu-tRNAGln amidotransferase C subunits. The Glu-tRNA Gln amidotransferase enzyme itself is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln. This activity supplements the lack of glutaminyl-tRNA synthetase activity in gram-positive eubacterteria, cyanobacteria, Archaea, and organelles. Pssm-ID: 460651 [Multi-domain] Cd Length: 70 Bit Score: 62.14 E-value: 1.87e-14
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gatC | PRK00034 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC; |
43-98 | 9.52e-13 | |||
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC; Pssm-ID: 178810 [Multi-domain] Cd Length: 95 Bit Score: 58.29 E-value: 9.52e-13
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gatC | TIGR00135 | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; Archaea, organelles, and many ... |
11-97 | 1.01e-10 | |||
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; Archaea, organelles, and many bacteria charge Gln-tRNA by first misacylating it with Glu and then amidating Glu to Gln. This small protein is part of the amidotransferase heterotrimer and appears to be important to the stability of the amidase subunit encode by gatA, but its function may not be required in every organism that expresses gatA and gatB. The seed alignment for this model does not include any eukaryotic sequence and is not guaranteed to find eukaryotic examples, although it does find some. Saccharomyces cerevisiae, which expresses the amidotransferase for mitochondrial protein translation, seems to lack a gatC ortholog. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model. [Protein synthesis, tRNA aminoacylation] Pssm-ID: 129241 [Multi-domain] Cd Length: 93 Bit Score: 53.07 E-value: 1.01e-10
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Name | Accession | Description | Interval | E-value | |||
GatC | COG0721 | Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and ... |
43-98 | 2.94e-15 | |||
Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]; Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases Pssm-ID: 440485 [Multi-domain] Cd Length: 95 Bit Score: 64.73 E-value: 2.94e-15
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Glu-tRNAGln | pfam02686 | Glu-tRNAGln amidotransferase C subunit; This is a family of Glu-tRNAGln amidotransferase C ... |
43-93 | 1.87e-14 | |||
Glu-tRNAGln amidotransferase C subunit; This is a family of Glu-tRNAGln amidotransferase C subunits. The Glu-tRNA Gln amidotransferase enzyme itself is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln. This activity supplements the lack of glutaminyl-tRNA synthetase activity in gram-positive eubacterteria, cyanobacteria, Archaea, and organelles. Pssm-ID: 460651 [Multi-domain] Cd Length: 70 Bit Score: 62.14 E-value: 1.87e-14
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gatC | PRK00034 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC; |
43-98 | 9.52e-13 | |||
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC; Pssm-ID: 178810 [Multi-domain] Cd Length: 95 Bit Score: 58.29 E-value: 9.52e-13
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gatC | TIGR00135 | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; Archaea, organelles, and many ... |
11-97 | 1.01e-10 | |||
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; Archaea, organelles, and many bacteria charge Gln-tRNA by first misacylating it with Glu and then amidating Glu to Gln. This small protein is part of the amidotransferase heterotrimer and appears to be important to the stability of the amidase subunit encode by gatA, but its function may not be required in every organism that expresses gatA and gatB. The seed alignment for this model does not include any eukaryotic sequence and is not guaranteed to find eukaryotic examples, although it does find some. Saccharomyces cerevisiae, which expresses the amidotransferase for mitochondrial protein translation, seems to lack a gatC ortholog. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model. [Protein synthesis, tRNA aminoacylation] Pssm-ID: 129241 [Multi-domain] Cd Length: 93 Bit Score: 53.07 E-value: 1.01e-10
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PRK12821 | PRK12821 | aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional |
11-86 | 2.47e-09 | |||
aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional Pssm-ID: 237216 [Multi-domain] Cd Length: 477 Bit Score: 52.59 E-value: 2.47e-09
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Blast search parameters | ||||
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