NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1933302918|ref|WP_195170792|]
View 

SdrD B-like domain-containing protein [Phototrophicus methaneseepsis]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SdrD_B super family cl25441
SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This ...
 36-112 4.48e-09

SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.


The actual alignment was detected with superfamily member pfam17210:

Pssm-ID: 435789 [Multi-domain]  Cd Length: 112  Bit Score: 52.99  E-value: 4.48e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933302918  36 RAFEDRNRNGIKEAGEPFlVDGISANLLNEDGIIINTALLSqsqrkSEGLVCFQRLTPGVYTVQVIS-ADYVPTSAEQ 112
Cdd:pfam17210   6 FVWEDANKNGIQDAGEPG-ISGVTVTLYDANGTVVGTTTTD-----ANGKYLFTNLAPGTYYVEFTApAGYTFTPQNQ 77
 
Name Accession Description Interval E-value
SdrD_B pfam17210
SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This ...
 36-112 4.48e-09

SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.


Pssm-ID: 435789 [Multi-domain]  Cd Length: 112  Bit Score: 52.99  E-value: 4.48e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933302918  36 RAFEDRNRNGIKEAGEPFlVDGISANLLNEDGIIINTALLSqsqrkSEGLVCFQRLTPGVYTVQVIS-ADYVPTSAEQ 112
Cdd:pfam17210   6 FVWEDANKNGIQDAGEPG-ISGVTVTLYDANGTVVGTTTTD-----ANGKYLFTNLAPGTYYVEFTApAGYTFTPQNQ 77
 
Name Accession Description Interval E-value
SdrD_B pfam17210
SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This ...
 36-112 4.48e-09

SdrD B-like domain; This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.


Pssm-ID: 435789 [Multi-domain]  Cd Length: 112  Bit Score: 52.99  E-value: 4.48e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933302918  36 RAFEDRNRNGIKEAGEPFlVDGISANLLNEDGIIINTALLSqsqrkSEGLVCFQRLTPGVYTVQVIS-ADYVPTSAEQ 112
Cdd:pfam17210   6 FVWEDANKNGIQDAGEPG-ISGVTVTLYDANGTVVGTTTTD-----ANGKYLFTNLAPGTYYVEFTApAGYTFTPQNQ 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH