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Conserved domains on  [gi|1933279509|gb|QPD90021|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Pithecopus gonzagai]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl31790
NADH dehydrogenase subunit 2; Provisional
 1-178 1.04e-93

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00070:

Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 276.03  E-value: 1.04e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   1 AIIPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 80
Cdd:MTH00070   39 AIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSP 160
Cdd:MTH00070  119 LQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSP 198

                         170
                  ....*....|....*...
gi 1933279509 161 QLSLLNFIIYILMTSSLF 178
Cdd:MTH00070  199 HLTLLNLLIYLIMTSSMF 216
 
Name Accession Description Interval E-value
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-178 1.04e-93

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 276.03  E-value: 1.04e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   1 AIIPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 80
Cdd:MTH00070   39 AIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSP 160
Cdd:MTH00070  119 LQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSP 198

                         170
                  ....*....|....*...
gi 1933279509 161 QLSLLNFIIYILMTSSLF 178
Cdd:MTH00070  199 HLTLLNLLIYLIMTSSMF 216
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 12-178 8.00e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 81.21  E-value: 8.00e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  12 PRAIEAATKYFLTQAAASALILFSSIMNAWLAG-----------EWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 80
Cdd:pfam00361  29 PRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSGLLLLFLLILVGFLFKSAQVPFHTWLPDA 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGS-TLQTGLILSTWQKLAP-----MSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIA 154
Cdd:pfam00361 109 YEGApTPVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLI 188

                         170       180
                  ....*....|....*....|....*...
gi 1933279509 155 IV----KMSPQLSLLNFIIYILMTSSLF 178
Cdd:pfam00361 189 ALgagtIYGIQAAIFHLLTHGLFSAGLF 216
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-178 1.35e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 79.00  E-value: 1.35e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  11 HPRAIEAATKYFLTQAAASALILFSSIMNAWLAGE-------WAINTNMNPTP-----MVLLSIAIAMKLGVAPFHFWLP 78
Cdd:COG1007   148 DRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSlnlagiaAALAAGGANSPllllgLVLVLAGLAFKLSAVPFHMWTP 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  79 EVLQGSTLQTGLILSTWQKLAPMSLLIQL------SENTNLFLMMT-LGLLSTMIGGWGGINQTQLRKILAFSSIAHLGW 151
Cdd:COG1007   228 DVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpGLAADWQLLLAvLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGY 307

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1933279509 152 M----IAIVKMSPQLSLLNFIIYILMTSSLF 178
Cdd:COG1007   308 LllglAAGTPLGVSAALFYLLAYLFMNLGAF 338
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-178 3.00e-15

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 72.29  E-value: 3.00e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  13 RAIEAATKYFLTQAAASALILFSSIM-------------NAWLAGEWAINTNMNpTPMVLLSIAIAMKLGVAPFHFWLPE 79
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfedlLLFLSNGMLNISLLL-LGIVLILVGLLFKLSAVPFHMWVPD 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  80 VLQGSTLQTGLILSTWQKLAPMSLLIQLS-------ENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWM 152
Cdd:TIGR01770 229 VYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYI 308

                         170       180       190
                  ....*....|....*....|....*....|
gi 1933279509 153 IAIV----KMSPQLSLLNFIIYILMTSSLF 178
Cdd:TIGR01770 309 LIGLlagtLEGIKAVLFYIFIYALMSLGAF 338
 
Name Accession Description Interval E-value
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-178 1.04e-93

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 276.03  E-value: 1.04e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   1 AIIPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 80
Cdd:MTH00070   39 AIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSP 160
Cdd:MTH00070  119 LQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSP 198

                         170
                  ....*....|....*...
gi 1933279509 161 QLSLLNFIIYILMTSSLF 178
Cdd:MTH00070  199 HLTLLNLLIYLIMTSSMF 216
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-178 1.36e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 270.52  E-value: 1.36e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   1 AIIPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 80
Cdd:MTH00135   39 AIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGSTLQTGLILSTWQKLAPMSLLIQLSeNTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSP 160
Cdd:MTH00135  119 LQGLDLTTGLILSTWQKLAPFALILQIA-PTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSP 197

                         170
                  ....*....|....*...
gi 1933279509 161 QLSLLNFIIYILMTSSLF 178
Cdd:MTH00135  198 SLTLLALLTYIIMTSSAF 215
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-178 5.41e-84

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 251.28  E-value: 5.41e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   1 AIIPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 80
Cdd:MTH00112   39 AIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSP 160
Cdd:MTH00112  119 LQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSP 198

                         170
                  ....*....|....*...
gi 1933279509 161 QLSLLNFIIYILMTSSLF 178
Cdd:MTH00112  199 KLTLLTFYIYILMTTPMF 216
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-178 1.76e-77

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 234.74  E-value: 1.76e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   1 AIIPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 80
Cdd:MTH00105   39 AIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSP 160
Cdd:MTH00105  119 TQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNP 198

                         170
                  ....*....|....*...
gi 1933279509 161 QLSLLNFIIYILMTSSLF 178
Cdd:MTH00105  199 TLTLLNLLIYIIMTLTMF 216
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-178 4.04e-62

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 195.53  E-value: 4.04e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   1 AIIPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 80
Cdd:MTH00041   39 SIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSP 160
Cdd:MTH00041  119 LQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSP 198

                         170
                  ....*....|....*...
gi 1933279509 161 QLSLLNFIIYILMTSSLF 178
Cdd:MTH00041  199 NASIIMFLIYIIINTSIF 216
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-178 2.53e-61

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 193.26  E-value: 2.53e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   1 AIIPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 80
Cdd:MTH00200   39 AIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSP 160
Cdd:MTH00200  119 LQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSP 198

                         170
                  ....*....|....*...
gi 1933279509 161 QLSLLNFIIYILMTSSLF 178
Cdd:MTH00200  199 NLALLYLLLYVIITLTVF 216
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-178 3.53e-34

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 122.62  E-value: 3.53e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   2 IIPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLagewaiNTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVL 81
Cdd:MTH00160   41 FIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN------LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVM 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  82 QGSTLQTGLILSTWQKLAPMSLLiqlSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQ 161
Cdd:MTH00160  115 EGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISEN 191

                         170
                  ....*....|....*..
gi 1933279509 162 LSLLNFIIYILMTSSLF 178
Cdd:MTH00160  192 LWLIYFLIYSIISLSII 208
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-178 1.43e-33

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 121.15  E-value: 1.43e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   1 AIIPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAIntnmnptpMVLLSIAIAMKLGVAPFHFWLPEV 80
Cdd:MTH00144   39 GFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS--------MSLLLLGLCLKLGLFPFHFWVPSV 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLF-LMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMS 159
Cdd:MTH00144  111 MAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAyLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHG 190

                         170
                  ....*....|....*....
gi 1933279509 160 PQLSLLNFIIYILMTSSLF 178
Cdd:MTH00144  191 SWLMWMYFLIYIVSSGFLF 209
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 3-178 7.04e-32

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 116.80  E-value: 7.04e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   3 IPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNawlageWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQ 82
Cdd:MTH00011   43 VPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMM------WSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMS 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  83 GSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQL 162
Cdd:MTH00011  117 SISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSM 196

                         170
                  ....*....|....*.
gi 1933279509 163 SLLNFIIYILMTSSLF 178
Cdd:MTH00011  197 AILYFMTYIIITTPLM 212
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 3-178 3.89e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 101.29  E-value: 3.89e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   3 IPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAwlagewaINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQ 82
Cdd:MTH00197   35 IPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SNLYLSLLSVVLVILGLLLKLGAFPFHFWVPSVME 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  83 GSTLQTGLILSTWQKLAPMSLLIQLSENTnlFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQL 162
Cdd:MTH00197  108 SLSWFNCFLLATWQKLAPLLILAFNSSSF--MGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSI 185

                         170
                  ....*....|....*.
gi 1933279509 163 SLLNFIIYILMTSSLF 178
Cdd:MTH00197  186 FMLYYLIYFVIMFMLF 201
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-178 1.24e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 84.31  E-value: 1.24e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  16 EAATKYFLTQAAASALILFSSIMNAWLAGEWAIN-------------TNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQ 82
Cdd:MTH00196   44 EAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSyinlvlnsgqsfsSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYE 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  83 GSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLMmtLGLLSTMIGGWGGINQTQLRKILAFSSIAHLG---WMIAIVKM- 158
Cdd:MTH00196  124 GAPTKTTALLAIVPKLGIFSILVSIGLNVNILLI--GGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFe 201

                         170       180
                  ....*....|....*....|
gi 1933279509 159 SPQLSLLNFIIYILMTSSLF 178
Cdd:MTH00196  202 SIQASLVYLFIYIIMSICVF 221
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-178 1.26e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 85.07  E-value: 1.26e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  13 RAIEAATKYFLTQAAASALILFSSIMNAWLAGE---WAINTNMN-PTPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQT 88
Cdd:MTH00199  145 YSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGEtsiQGINSILTgDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTIT 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  89 GLILSTWQKLAPMSLLIQLSENTNLFLMMtlGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKM----SPQLSL 164
Cdd:MTH00199  225 TALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIgsfeSIQASL 302

                         170
                  ....*....|....
gi 1933279509 165 LNFIIYILMTSSLF 178
Cdd:MTH00199  303 IYMIIYVIMSICSF 316
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 12-178 8.00e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 81.21  E-value: 8.00e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  12 PRAIEAATKYFLTQAAASALILFSSIMNAWLAG-----------EWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 80
Cdd:pfam00361  29 PRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSGLLLLFLLILVGFLFKSAQVPFHTWLPDA 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGS-TLQTGLILSTWQKLAP-----MSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIA 154
Cdd:pfam00361 109 YEGApTPVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLI 188

                         170       180
                  ....*....|....*....|....*...
gi 1933279509 155 IV----KMSPQLSLLNFIIYILMTSSLF 178
Cdd:pfam00361 189 ALgagtIYGIQAAIFHLLTHGLFSAGLF 216
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-178 1.35e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 79.00  E-value: 1.35e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  11 HPRAIEAATKYFLTQAAASALILFSSIMNAWLAGE-------WAINTNMNPTP-----MVLLSIAIAMKLGVAPFHFWLP 78
Cdd:COG1007   148 DRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSlnlagiaAALAAGGANSPllllgLVLVLAGLAFKLSAVPFHMWTP 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  79 EVLQGSTLQTGLILSTWQKLAPMSLLIQL------SENTNLFLMMT-LGLLSTMIGGWGGINQTQLRKILAFSSIAHLGW 151
Cdd:COG1007   228 DVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpGLAADWQLLLAvLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGY 307

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1933279509 152 M----IAIVKMSPQLSLLNFIIYILMTSSLF 178
Cdd:COG1007   308 LllglAAGTPLGVSAALFYLLAYLFMNLGAF 338
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
13-178 1.64e-15

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 73.32  E-value: 1.64e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  13 RAIEAATKYFLTQAAASALILFSSIMNAWLAGEW-------AINTNMNPTP-----MVLLSIAIAMKLGVAPFHFWLPEV 80
Cdd:PRK05777  151 RSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLsfagiakALADGSGNSLlllfgLVFLLVGLAFKLSAVPFHMWTPDV 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGSTLQTGLILSTWQKLAPMSLLIQLSEN-------TNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMI 153
Cdd:PRK05777  231 YEGAPTPVTAFLATAPKIAAFAVLLRLLVVafgglseDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLL 310

                         170       180
                  ....*....|....*....|....*....
gi 1933279509 154 AIVKMSPQLS----LLNFIIYILMTSSLF 178
Cdd:PRK05777  311 VGLAAGTAEGysavLFYLLAYLFMTLGAF 339
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-178 3.00e-15

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 72.29  E-value: 3.00e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  13 RAIEAATKYFLTQAAASALILFSSIM-------------NAWLAGEWAINTNMNpTPMVLLSIAIAMKLGVAPFHFWLPE 79
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfedlLLFLSNGMLNISLLL-LGIVLILVGLLFKLSAVPFHMWVPD 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  80 VLQGSTLQTGLILSTWQKLAPMSLLIQLS-------ENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWM 152
Cdd:TIGR01770 229 VYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYI 308

                         170       180       190
                  ....*....|....*....|....*....|
gi 1933279509 153 IAIV----KMSPQLSLLNFIIYILMTSSLF 178
Cdd:TIGR01770 309 LIGLlagtLEGIKAVLFYIFIYALMSLGAF 338
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 4-178 8.54e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 62.47  E-value: 8.54e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   4 PLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEW----------AINTNMNPTPMVLLSIAIAMKLGVAPF 73
Cdd:COG0651   145 GLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLnmadlaarlaELDPGLLLAAFALLLVGFGIKAALFPL 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  74 HFWLPE-----------VLQGSTLQTGL--ILSTWQKLAPMSLLIQLSEntnlfLMMTLGLLSTMIGGWGGINQTQLRKI 140
Cdd:COG0651   225 HFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT-----LLLVLGLLTMLVGALGALAQRDLKRL 299

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1933279509 141 LAFSSIAHLGWMIAIVKMSPQLSLLNFIIYI----LMTSSLF 178
Cdd:COG0651   300 LAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLF 341
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
12-156 1.59e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 61.61  E-value: 1.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  12 PRAIEAATKYFLTQAAASALILF-SSIMNAWLAGEW---AINTNMNPTPMVLLSIA-------IAMKLGVAPFHFWLPEV 80
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTqlsAIALALITSPSLGLALAlvfviagIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGSTLQTGLILSTWQKLAPMSLLIQL--------SENTNlFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGW- 151
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAGFALAIRLlvtafpsfDEQWK-LLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFv 315


                  ....*
gi 1933279509 152 MIAIV 156
Cdd:PRK02504  316 MIGLV 320
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 58-172 3.30e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 60.64  E-value: 3.30e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  58 VLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLmmTLGLLSTMIGGWGGINQTQL 137
Cdd:MTH00198  303 LFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLL--SVAIISLVVGAFGALNQTRI 380

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1933279509 138 RKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYIL 172
Cdd:MTH00198  381 KRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAV 415
ndhB CHL00049
NADH dehydrogenase subunit 2
 13-173 6.56e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 60.02  E-value: 6.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  13 RAIEAATKYFLTQAAASALIL--FSsimnaWLAG------------EWAINTNMNPTPMVLLSIA-----IAMKLGVAPF 73
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFS-----WLYGlsggeielqeivNGLINTQMYNSPGISIALIfitvgIGFKLSLAPF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  74 HFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQL-------SENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSI 146
Cdd:CHL00049  234 HQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIfdipfyfSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1933279509 147 AHLGW-MIAIVKMSPQL---SLLNF-IIYILM 173
Cdd:CHL00049  314 GQIGYvIIGIIVGDSNDgyaSMITYmLFYIFM 345
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 11-161 5.50e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.01  E-value: 5.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  11 HPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWA------INTNMNPTP----MVLLSIAIAMKLGVAPFHFWLPEV 80
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiaelAAAPLPLTAqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  81 LQGSTLQTGLILS---------------------TWQKLAPmslliqlsentnlfLMMTLGLLSTMIGGWGGINQTQLRK 139
Cdd:COG1008   236 HVEAPTAGSVLLAgvllkmggygllrfalplfpeASAYFAP--------------LLAALGVIGIIYGALVALAQTDLKR 301

                         170       180
                  ....*....|....*....|...
gi 1933279509 140 ILAFSSIAHLGWM-IAIVKMSPQ 161
Cdd:COG1008   302 LIAYSSVSHMGFVlLGIFALNPL 324
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-178 1.70e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 52.96  E-value: 1.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   4 PLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAG--EWAINTNMNP------TPMVLLSIAIAMKLGVAPFHF 75
Cdd:PRK08375  144 ALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGtlNMADLAGALAenptvvTAFGFVLLALALKAAVFPLHT 223

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  76 WLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLS----------ENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSS 145
Cdd:PRK08375  224 WLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYftvfggdfrfALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYST 303

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1933279509 146 IAHLGWMIAIVKMSPQLSLLNFIIYI----LMTSSLF 178
Cdd:PRK08375  304 VSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALF 340
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 12-153 4.23e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.48  E-value: 4.23e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  12 PRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTP---------MVLLSIAIAMKLGVAPFHFWLPEV-L 81
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTFDLLELLNLPlpfgvqtwlFLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933279509  82 QGSTLQTGLILSTWQKLAP---MSLLIQLSENTNLF---LMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMI 153
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTygfLRFNLPLFPDASLYfapVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-153 3.98e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 48.94  E-value: 3.98e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   8 KNPHPRAIEAATKYFLTQAAASALILFSSIM-----NAWLAGEWAINTNMNPTP-----MVLLSIAIAMKLGVAPFHFWL 77
Cdd:PRK08376  164 RNDTWEAIEAGIKYMFVGSLASSMVLLGIALlygqyGTLNMAYLAVKMSENPTVvakiaLALFIAGLAMKSGAVPVHMWL 243

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  78 PEVLQG--STLQTGLILSTWQKLAPMSLLI------QLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHL 149
Cdd:PRK08376  244 PDAYPAapSSISAMLLVIKQAGLYALARVLfsiygpAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQI 323


                  ....
gi 1933279509 150 GWMI 153
Cdd:PRK08376  324 GYML 327
PRK12650 PRK12650
DUF4040 family protein;
43-178 4.47e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 48.89  E-value: 4.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  43 AGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLS---ENTNLF--LMM 117
Cdd:PRK12650  197 SDVWAEKPGLTTVVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvfHDVAVWnwLLI 276

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933279509 118 TLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYI----LMTSSLF 178
Cdd:PRK12650  277 IVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLF 341
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
17-165 9.47e-07

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 47.77  E-value: 9.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  17 AATKYFLTQAAASALILFSSIMNAWLAGewAINTNMNP---------TPMVLLS---IAIAMKLGVAPFHFWLPEV-LQG 83
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSG--ASSFDYEPlrshtlplsTQLLLLApilVGFGIKIPLVPFHTWLPDAhVEA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  84 STLQTGLILSTWQKLAPMSLLiqlSENTNLFL---------MMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIA 154
Cdd:PRK06473  236 STPVSVLLAGVLLKLGTYGLL---RFGVGLFPeawvylapwLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILL 312

                         170
                  ....*....|.
gi 1933279509 155 IVKMSPQLSLL 165
Cdd:PRK06473  313 AAAAATPLSIL 323
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 17-150 6.25e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 45.41  E-value: 6.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  17 AATKYFLTQAAASALILFSSIMNAWLAGEWAINTN---MNPTPMVL-------LSIAIAMKLGVAPFHFWLPEV-----L 81
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTFTFDLAelgAKSYPLALelllyagFLIAFGVKLPIFPLHTWLPDAhgeasA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933279509  82 QGSTLQTGLILstwqKLAPMSLL---IQLSENTNLFL---MMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLG 150
Cdd:PRK12561  218 PVSMILAGVLL----KMGGYALIrfnVQMLPDAHVYFapaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMG 288
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 58-178 3.05e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 43.42  E-value: 3.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  58 VLLSIAIAMKLGVAPFHFWLPE-----------VLQGSTLQTGL--ILSTWQKLAPMSLLiqlseNTnlfLMMTLGLLST 124
Cdd:PRK12665  213 AVLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAGLLTKVGVyaIIRTHTLLFPGGGL-----DT---LLMVVALLTM 284

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1933279509 125 MIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIY----ILMTSSLF 178
Cdd:PRK12665  285 VVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYvahhITVQTTLF 342
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 12-153 6.34e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 42.50  E-value: 6.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  12 PRAIEAATKYFLTQAAASALILFSSI----MNAWLAGEWAI----NTNMNPTPMVLL----SIAIAMKLGVAPFHFWLPE 79
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIadllNLPLPPGVQYWLflafFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  80 VLQ-----GSTLQTGLILstwqKLAPMSLL---IQLSENTN---LFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAH 148
Cdd:PRK05846  237 AHVqaptaGSVLLAGILL----KMGAYGLLrfsLPLFPDAShefAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312


                  ....*
gi 1933279509 149 LGWMI 153
Cdd:PRK05846  313 MGFVT 317
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 43-154 1.07e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 41.68  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  43 AGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILS-TWQK-----LAPMSLLIQLSENTnLFLM 116
Cdd:COG1009   200 AAPTILSSPLLTLILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAaTMVKagvylLARLSPLFALSPVW-LTVV 278

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1933279509 117 MTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIA 154
Cdd:COG1009   279 AIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFL 316
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 30-165 1.50e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 41.09  E-value: 1.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  30 ALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSE 109
Cdd:MTH00211  180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSP 259

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933279509 110 NTN-----LFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWM-IAIVKMSPQLSLL 165
Cdd:MTH00211  260 LFQnnqliLGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMmVTLGLNQPQLAFL 321
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 53-156 2.63e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 40.68  E-value: 2.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  53 NPTPMVLLSIAIAM-------KLGVAPFHFWLPEVLQGST-----------LQTGLILSTwqKLAPMslliqLSENTN-L 113
Cdd:PRK12644  195 DPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTpvsaylhaaamVKAGIYLVA--RLAPG-----FADVPVwR 267

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1933279509 114 FLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIV 156
Cdd:PRK12644  268 PTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 12-172 2.65e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 40.34  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  12 PRAIEAATKYFLTQAAASAL------ILFSSI-------MNAWLAGEWAINTnMNPTPMVLLSIAIAM---------KLG 69
Cdd:PRK12667  160 GDAVEAAIKYALIGAVGTTLyflalaFLYATFgtlnmadLSAKIRGLSFPLT-GGLAGNPPLALGVALalalwaftiKAA 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  70 VAPFHFWLPEV-----------LQGSTLQTG---------LILSTWQKLAPMSLLIQlsentnlFLMMTLGLLSTMIGGW 129
Cdd:PRK12667  239 IFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALS-------PILIILGAVSAIIGAL 311

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1933279509 130 GGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYIL 172
Cdd:PRK12667  312 MMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHII 354
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-178 3.10e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 40.32  E-value: 3.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509   1 AIIPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAIN--TNMNPTPMVLLSIAIAMKLGVAPFHFWLP 78
Cdd:PRK07234  129 ATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSglATADPEAFALIALGLLVKGGIFVSGLWLP 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  79 EVLQGSTLQTGLILS---TWQKLAPMSLLIQLSENTNLfLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAi 155
Cdd:PRK07234  209 LTHSEAEPPVSALLSgvvVKAGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILA- 286

                         170       180
                  ....*....|....*....|...
gi 1933279509 156 vkmSPQLSLLNFIIYILMTSSLF 178
Cdd:PRK07234  287 ---APLVGGLYALAHGLVKSTLF 306
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
17-165 3.50e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.08  E-value: 3.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  17 AATKYFLTQAAASALILFSSIMNAWLAGE----------WAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV-LQGST 85
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGStsfdydaistQNLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  86 LQTGLILSTWQKLAPMSLL---IQLSENTNLFLMMTL---GLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMS 159
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLLrfgLQLFPQTWSLVAPGLaiiGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317


                  ....*.
gi 1933279509 160 PQLSLL 165
Cdd:PRK07363  318 TQLSLL 323
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
 55-155 3.63e-04

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 40.21  E-value: 3.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  55 TPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSE----NTNLFLMMTL-GLLSTMIGGW 129
Cdd:TIGR00940 207 TAMVLVLLGAFTKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTPvfagTEAWFWIVGLaGLITLLWGSY 286

                          90       100
                  ....*....|....*....|....*.
gi 1933279509 130 GGINQTQLRKILAFSSIAHLGWMIAI 155
Cdd:TIGR00940 287 FAIFQQDLKGILAFSTISQLGLIMVL 312
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 58-178 4.29e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.94  E-value: 4.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  58 VLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQ---LSENTNLFLMMT--LGLLSTMIGGWGGI 132
Cdd:MTH00032  229 ILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRsfpLFEKAPLTLLIItiFGALTAFFAATVGL 308

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1933279509 133 NQTQLRKILAFSSIAHLGWMIAIVKM--SPQLSLLNFIIYILMTSSLF 178
Cdd:MTH00032  309 VQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLF 356
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 62-150 5.24e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 39.65  E-value: 5.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  62 IAIAMKLGVAPFHFWLPEV-----LQGSTLQTGLILstwqKLAPMSLL----IQLSENTNLF--LMMTLGLLSTMIGGWG 130
Cdd:MTH00217  214 LSLAIKIPKIPFHIWLPQAhveapVAGSVILAGVLL----KLGGYGFIrfswPLLPEASEYFspLIQTLSLLAIIYGSLT 289

                          90       100
                  ....*....|....*....|
gi 1933279509 131 GINQTQLRKILAFSSIAHLG 150
Cdd:MTH00217  290 TCRQVDLKRIIAYSSVAHMG 309
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 12-155 1.50e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.27  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  12 PRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPM--------------VLLSIAIAMKLGVAPFHFWL 77
Cdd:PRK12649  158 PESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitlILIFIGAAAKSAQGPFYIWL 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  78 PEVLQGSTLQTGLILSTWQKLAPMSLLIQ----LSENTNLFLMMT-LGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWM 152
Cdd:PRK12649  238 PNAMEAPTPVSAFLHSATMVKAGVYLVARihpiFSGTEAWFILVSgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYL 317


                  ...
gi 1933279509 153 IAI 155
Cdd:PRK12649  318 MTM 320
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 62-173 1.92e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 37.98  E-value: 1.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  62 IAIAMKLGVAPFHFWLPEV-----LQGSTLQTGLILstwqKLAPMSL------LIQLSENTNLFLMMTLGLLSTMIGGWG 130
Cdd:MTH00226  238 LAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLvrlswpILPLGAQNLAPAVIAMGIVGIVYGSFA 313

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1933279509 131 GINQTQLRKILAFSSIAHLGwMIAIVKMSPQLSLLNFIIYILM 173
Cdd:MTH00226  314 TCRQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIML 355
PRK12646 PRK12646
DUF4040 family protein;
57-156 2.65e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 37.81  E-value: 2.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  57 MVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLS-----ENTNLFLMMTLGLLSTMIGGWGG 131
Cdd:PRK12646  213 IFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTpllglSNMYIYIVTFVGLITMLFGSITA 292

                          90       100
                  ....*....|....*....|....*
gi 1933279509 132 INQTQLRKILAFSSIAHLGWMIAIV 156
Cdd:PRK12646  293 LKQWDLKGILAYSTISQLGMIMAMV 317
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 49-178 2.94e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 37.32  E-value: 2.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  49 NTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLM-----MTLGLLS 123
Cdd:MTH00209  170 NSNLGSVISVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFFPSLFSSPFfsmslLLLGSLT 249

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1933279509 124 TMIGGWGGINQTQLRKILAFSSIAHLGWM-IAIVKMSPQLSLLNFIIYILMTSSLF 178
Cdd:MTH00209  250 TLMASMSANVESDLKKIIALSTLSQLGLMmCSLGLNQPELAFFHLITHALFKALLF 305
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 59-160 5.54e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 36.51  E-value: 5.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  59 LLSIAIAMKLGVAPFHFWLPE-----------VLQGSTLQTG--LILSTWQKLAPMSLLIQLSE--NTNLF--LMMTLGL 121
Cdd:PRK08668  201 FLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGayGFLLVLYVLPGTKLFSEFGTyrGVPLFnyILAWLGN 280

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1933279509 122 LSTMIGGWGGINQTQLRKILAFSSIAHLGW-MIAIVKMSP 160
Cdd:PRK08668  281 ISIIVGTLMAILQEDIKKLIAYSSVANGGYiLVGLGLGTS 320
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 11-152 6.75e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 36.45  E-value: 6.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  11 HPRAIEAATKYFLTQAAASALILFSSI---MNA-------WLAGEW----AINTNMNPTPM----VLLSIAIAMKLGVAP 72
Cdd:PRK06458  153 TRASLEAAWKYIIICSVGVAFALFGTIlvyANAatvmgdgEMAILWtellKHASLLDPTLMklafVFLLIGFGTKVGLFP 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  73 FHFWLPE-----------VLQGSTLQTGL-ILSTWQKLAPMSLLIQLSENtnlfLMMTLGLLSTMIGGWGGINQTQLRKI 140
Cdd:PRK06458  233 MHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILIDAAIGSDFPGR----LLLIFGLLSVLVAAFFLLRQRDIKRL 308

                         170
                  ....*....|..
gi 1933279509 141 LAFSSIAHLGWM 152
Cdd:PRK06458  309 FAYSSIEHMGLI 320
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 58-175 8.20e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 35.89  E-value: 8.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279509  58 VLLSIAIAMKLGVAPFHFWLPE-----------VLQGSTLQTGLIlstwqKLAPMSLLIQLSENTNLF--LMMTLGLLST 124
Cdd:PRK08676  210 LFIFIGFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGIY-----GILRLSALLRQSGAAEQFsnVLIGLGIFSI 284

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1933279509 125 MIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTS 175
Cdd:PRK08676  285 AVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHS 335
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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