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Conserved domains on  [gi|1933279497|gb|QPD90015|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Pithecopus gonzagai]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl31790
NADH dehydrogenase subunit 2; Provisional
 1-249 7.60e-111

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00070:

Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 322.64  E-value: 7.60e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEWAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLA 80
Cdd:MTH00070   58 KYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  81 PMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTSSLFL 160
Cdd:MTH00070  138 PMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFL 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 161 LFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRLS 240
Cdd:MTH00070  218 MLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLS 297


                  ....*....
gi 1933279497 241 YVMTLTLAP 249
Cdd:MTH00070  298 YAMSLTTSP 306
 
Name Accession Description Interval E-value
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-249 7.60e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 322.64  E-value: 7.60e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEWAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLA 80
Cdd:MTH00070   58 KYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  81 PMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTSSLFL 160
Cdd:MTH00070  138 PMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFL 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 161 LFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRLS 240
Cdd:MTH00070  218 MLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLS 297


                  ....*....
gi 1933279497 241 YVMTLTLAP 249
Cdd:MTH00070  298 YAMSLTTSP 306
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-229 1.70e-18

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 82.36  E-value: 1.70e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTG-----------EWAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGS-TLQ 68
Cdd:pfam00361  37 KYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSGLLLLFLLILVGFLFKSAQVPFHTWLPDAYEGApTPV 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  69 TGLILSTWQKLAP-----MSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIV----KM 139
Cdd:pfam00361 117 SALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIY 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 140 SPQLSLLNFIIYILMTSSLFLLFMNL-----NTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELV 214
Cdd:pfam00361 197 GIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAV 276

                         250
                  ....*....|....*
gi 1933279497 215 KQNLNMFTFIILMST 229
Cdd:pfam00361 277 AASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-243 2.64e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.46  E-value: 2.64e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIM-------------NAWLTGEWAINTNMNpMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTL 67
Cdd:TIGR01770 157 KYFILGAFSSGLLLFGISLiygftgslnfedlLLFLSNGMLNISLLL-LGIVLILVGLLFKLSAVPFHMWVPDVYEGAPT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  68 QTGLILSTWQKLAPMSLLIQLS-------ENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIV--- 137
Cdd:TIGR01770 236 PVTAFFSIVPKIAIFAVFLRLFlyilfgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLlag 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 138 -KMSPQLSLLNFIIYILMTSSLFLLFMNLN------TKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIA 210
Cdd:TIGR01770 316 tLEGIKAVLFYIFIYALMSLGAFGVLSLLRsykdewIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVF 395

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1933279497 211 QELVKQNLNMFTFIILMSTLLSLFFYLRLSYVM 243
Cdd:TIGR01770 396 FALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVM 428
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-243 1.91e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 80.93  E-value: 1.91e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGE-------WAINTNMNPMP-----MVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQ 68
Cdd:COG1007   157 KYFLLGALSSGFLLYGISLLYGATGSlnlagiaAALAAGGANSPllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTP 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  69 TGLILSTWQKLAPMSLLIQL------SENTNLFLMMT-LGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWM----IAIV 137
Cdd:COG1007   237 VTAFLATAPKIAAFAALLRLlveafpGLAADWQLLLAvLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllglAAGT 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 138 KMSPQLSLLNFIIYILMTSSLFLLFMNLNTK-----NITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQE 212
Cdd:COG1007   317 PLGVSAALFYLLAYLFMNLGAFAVILLLSRKggeaeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSA 396

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1933279497 213 LVKQNLNMFTFIILMSTLLSLFFYLRLSYVM 243
Cdd:COG1007   397 AVEAGLYWLAVIAVLNSVISAYYYLRVVKAM 427
 
Name Accession Description Interval E-value
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-249 7.60e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 322.64  E-value: 7.60e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEWAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLA 80
Cdd:MTH00070   58 KYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  81 PMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTSSLFL 160
Cdd:MTH00070  138 PMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFL 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 161 LFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRLS 240
Cdd:MTH00070  218 MLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLS 297


                  ....*....
gi 1933279497 241 YVMTLTLAP 249
Cdd:MTH00070  298 YAMSLTTSP 306
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-249 2.74e-108

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 315.98  E-value: 2.74e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEWAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLA 80
Cdd:MTH00135   58 KYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  81 PMSLLIQLSeNTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTSSLFL 160
Cdd:MTH00135  138 PFALILQIA-PTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFL 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 161 LFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRLS 240
Cdd:MTH00135  217 TFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLS 296


                  ....*....
gi 1933279497 241 YVMTLTLAP 249
Cdd:MTH00135  297 YAMTLTISP 305
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-249 4.72e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 287.49  E-value: 4.72e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEWAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLA 80
Cdd:MTH00112   58 KYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  81 PMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTSSLFL 160
Cdd:MTH00112  138 PLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFL 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 161 LFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRLS 240
Cdd:MTH00112  218 TLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLT 297


                  ....*....
gi 1933279497 241 YVMTLTLAP 249
Cdd:MTH00112  298 YISTITLPP 306
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-249 1.07e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 258.62  E-value: 1.07e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEWAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLA 80
Cdd:MTH00105   58 KYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  81 PMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTSSLFL 160
Cdd:MTH00105  138 PLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFM 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 161 LFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRLS 240
Cdd:MTH00105  218 LLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLI 297


                  ....*....
gi 1933279497 241 YVMTLTLAP 249
Cdd:MTH00105  298 YSTSLTMFP 306
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-249 1.38e-68

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 214.83  E-value: 1.38e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEWAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLA 80
Cdd:MTH00200   58 KYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  81 PMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTSSLFL 160
Cdd:MTH00200  138 PFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFL 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 161 LFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRLS 240
Cdd:MTH00200  218 LLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLS 297


                  ....*....
gi 1933279497 241 YVMTLTLAP 249
Cdd:MTH00200  298 YLTLLTLSP 306
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-249 1.55e-67

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 212.10  E-value: 1.55e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEWAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLA 80
Cdd:MTH00041   58 KYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  81 PMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTSSLFL 160
Cdd:MTH00041  138 PLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFL 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 161 LFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRLS 240
Cdd:MTH00041  218 IGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRIS 297


                  ....*....
gi 1933279497 241 YVMTLTLAP 249
Cdd:MTH00041  298 FNTSLTLFP 306
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-245 1.21e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 139.57  E-value: 1.21e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLtgewaiNTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLA 80
Cdd:MTH00160   59 KYFLIQALASIILLFSIILNMLN------LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIA 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  81 PMSLLiqlSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTSSLFL 160
Cdd:MTH00160  133 PLILL---SYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIIL 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 161 LFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRLS 240
Cdd:MTH00160  210 LFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRIS 289


                  ....*
gi 1933279497 241 YVMTL 245
Cdd:MTH00160  290 YSSLM 294
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-245 6.17e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 129.62  E-value: 6.17e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEWAIntnmnpmpMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLA 80
Cdd:MTH00144   58 KYFIIQSLGSSLLIFGSLIMYNLSFSWFS--------MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVA 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  81 PMSLLIQLSENTNLF-LMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTSSLF 159
Cdd:MTH00144  130 PLFLLSNFLDLYWLAyLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLF 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 160 LLFMNLNTKNITELSSSwFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRL 239
Cdd:MTH00144  210 FSLWSGDSGSMKDLGSL-KPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSV 288


                  ....*.
gi 1933279497 240 SYVMTL 245
Cdd:MTH00144  289 FFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-239 3.80e-34

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 125.28  E-value: 3.80e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNawltgeWAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLA 80
Cdd:MTH00011   60 KYFLAQALGSGLLLLGMTMM------WSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIA 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  81 PMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTSSLFL 160
Cdd:MTH00011  134 PLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLML 213

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933279497 161 LFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRL 239
Cdd:MTH00011  214 LFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL 292
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-241 1.17e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 110.53  E-value: 1.17e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAwltgewaINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLA 80
Cdd:MTH00197   52 KYFLFQEFGSALLLMGGSLSF-------SNLYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLA 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  81 PMSLLIQLSENTnlFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTSSLFL 160
Cdd:MTH00197  125 PLLILAFNSSSF--MGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFL 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 161 LFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRLS 240
Cdd:MTH00197  203 FLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLA 282


                  .
gi 1933279497 241 Y 241
Cdd:MTH00197  283 Y 283
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-243 3.96e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 93.56  E-value: 3.96e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEWAIN-------------TNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTL 67
Cdd:MTH00196   48 KYFVLGALSSGLFLFGCALLCGTTGGLHLSyinlvlnsgqsfsSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPT 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  68 QTGLILSTWQKLAPMSLLIQLSENTNLFLMmtLGLLSTMIGGWGGINQTQLRKILAFSSIAHLG---WMIAIVKM-SPQL 143
Cdd:MTH00196  128 KTTALLAIVPKLGIFSILVSIGLNVNILLI--GGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFeSIQA 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 144 SLLNFIIYILMTSSLFLLFMNLNTKN--ITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMF 221
Cdd:MTH00196  206 SLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLI 285

                         250       260
                  ....*....|....*....|..
gi 1933279497 222 TFIILMSTLLSLFFYLRLSYVM 243
Cdd:MTH00196  286 FLLAVFCSVIAGVYYVRIVKIL 307
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-239 2.04e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 92.39  E-value: 2.04e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGE---WAINTNMN-PMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTW 76
Cdd:MTH00199  152 KYFVLGAVSSGLFLFGCALLYGLTGEtsiQGINSILTgDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  77 QKLAPMSLLIQLSENTNLFLMMtlGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKM----SPQLSLLNFIIYI 152
Cdd:MTH00199  232 PKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIgsfeSIQASLIYMIIYV 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 153 LMTSSLF--LLFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTL 230
Cdd:MTH00199  310 IMSICSFsiILSLKLTKGLIVEVSGLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSV 389


                  ....*....
gi 1933279497 231 LSLFFYLRL 239
Cdd:MTH00199  390 IAGVYYVRV 398
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-229 1.70e-18

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 82.36  E-value: 1.70e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTG-----------EWAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGS-TLQ 68
Cdd:pfam00361  37 KYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSGLLLLFLLILVGFLFKSAQVPFHTWLPDAYEGApTPV 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  69 TGLILSTWQKLAP-----MSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIV----KM 139
Cdd:pfam00361 117 SALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIY 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 140 SPQLSLLNFIIYILMTSSLFLLFMNL-----NTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELV 214
Cdd:pfam00361 197 GIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAV 276

                         250
                  ....*....|....*
gi 1933279497 215 KQNLNMFTFIILMST 229
Cdd:pfam00361 277 AASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-243 2.64e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.46  E-value: 2.64e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIM-------------NAWLTGEWAINTNMNpMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTL 67
Cdd:TIGR01770 157 KYFILGAFSSGLLLFGISLiygftgslnfedlLLFLSNGMLNISLLL-LGIVLILVGLLFKLSAVPFHMWVPDVYEGAPT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  68 QTGLILSTWQKLAPMSLLIQLS-------ENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIV--- 137
Cdd:TIGR01770 236 PVTAFFSIVPKIAIFAVFLRLFlyilfgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLlag 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 138 -KMSPQLSLLNFIIYILMTSSLFLLFMNLN------TKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIA 210
Cdd:TIGR01770 316 tLEGIKAVLFYIFIYALMSLGAFGVLSLLRsykdewIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVF 395

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1933279497 211 QELVKQNLNMFTFIILMSTLLSLFFYLRLSYVM 243
Cdd:TIGR01770 396 FALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVM 428
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-243 1.91e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 80.93  E-value: 1.91e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGE-------WAINTNMNPMP-----MVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQ 68
Cdd:COG1007   157 KYFLLGALSSGFLLYGISLLYGATGSlnlagiaAALAAGGANSPllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTP 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  69 TGLILSTWQKLAPMSLLIQL------SENTNLFLMMT-LGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWM----IAIV 137
Cdd:COG1007   237 VTAFLATAPKIAAFAALLRLlveafpGLAADWQLLLAvLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllglAAGT 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 138 KMSPQLSLLNFIIYILMTSSLFLLFMNLNTK-----NITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQE 212
Cdd:COG1007   317 PLGVSAALFYLLAYLFMNLGAFAVILLLSRKggeaeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSA 396

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1933279497 213 LVKQNLNMFTFIILMSTLLSLFFYLRLSYVM 243
Cdd:COG1007   397 AVEAGLYWLAVIAVLNSVISAYYYLRVVKAM 427
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-243 1.89e-14

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 72.16  E-value: 1.89e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEW-------AINTNMNPMP-----MVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQ 68
Cdd:PRK05777  158 KYFVLGALASGFLLYGMSLLYGATGSLsfagiakALADGSGNSLlllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  69 TGLILSTWQKLAPMSLLIQLSEN-------TNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSP 141
Cdd:PRK05777  238 VTAFLATAPKIAAFAVLLRLLVVafgglseDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGT 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 142 QLS----LLNFIIYILMTSSLF--LLFMNLNTKNITELSS----SWfKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQ 211
Cdd:PRK05777  318 AEGysavLFYLLAYLFMTLGAFgvISLLRRKGGEAESISDfaglSK-RSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFE 396

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1933279497 212 ELVKQNLNMFTFIILMSTLLSLFFYLRLSYVM 243
Cdd:PRK05777  397 AAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLM 428
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-243 8.09e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 67.09  E-value: 8.09e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEW----------AINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPE---------- 60
Cdd:COG0651   161 KYLILNLVGSALFLLGVGLLYGATGTLnmadlaarlaELDPGLLLAAFALLLVGFGIKAALFPLHFWLPDaypaapspvs 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  61 -VLQGSTLQTGL--ILSTWQKLAPMSLLIQLSEntnlfLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIV 137
Cdd:COG0651   241 aLLSGLLTKVGVyaILRVLTLLFGADPALFLGT-----LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGL 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 138 KMSPQLSLLNFIIYI----LMTSSLFL----LFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLI 209
Cdd:COG0651   316 GLGTPLGLAGALFHLlnhaLAKALLFLaagaIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLL 395

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1933279497 210 AQELVKQNLNMFTFIILMSTLLSLFFYLRLSYVM 243
Cdd:COG0651   396 LQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 39-153 2.58e-10

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 59.87  E-value: 2.58e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  39 VLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLmmTLGLLSTMIGGWGGINQTQL 118
Cdd:MTH00198  303 LFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLL--SVAIISLVVGAFGALNQTRI 380

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1933279497 119 RKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYIL 153
Cdd:MTH00198  381 KRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAV 415
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 37-243 1.17e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 57.97  E-value: 1.17e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  37 PMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLS----------ENTNLFLMMTLGLLSTM 106
Cdd:PRK08375  204 AFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYftvfggdfrfALGLGWLLAVLALLSML 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 107 IGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYI----LMTSSLFL----LFMNLNTKNITELSSSWF 178
Cdd:PRK08375  284 VGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLaagaIEVTYGTRRLSELSGLGR 363

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933279497 179 KTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRLSYVM 243
Cdd:PRK08375  364 RMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRA 428
ndhB CHL00049
NADH dehydrogenase subunit 2
 38-243 2.04e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 57.32  E-value: 2.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  38 MVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQL-------SENTNLFLMMTLGLLSTMIGGW 110
Cdd:CHL00049  217 LIFITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIfdipfyfSSNEWHLLLEILAILSMILGNL 296

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 111 GGINQTQLRKILAFSSIAHLGW-MIAIVKMSPQLSLLNFIIYILmtsslFLLFMNLN-------------TKNITELSSS 176
Cdd:CHL00049  297 IAITQTSMKRMLAYSSIGQIGYvIIGIIVGDSNDGYASMITYML-----FYIFMNLGtfacivlfglrtgTDNIRDYAGL 371

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933279497 177 WFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRLSYVM 243
Cdd:CHL00049  372 YTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKIIKLL 438
PRK12650 PRK12650
DUF4040 family protein;
25-181 4.57e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 56.59  E-value: 4.57e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  25 GEWAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLS---ENTNLF--LMMT 99
Cdd:PRK12650  198 DVWAEKPGLTTVVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvfHDVAVWnwLLII 277

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 100 LGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYI----LMTSSLFLLFMNLN----TKNIT 171
Cdd:PRK12650  278 VGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIGVVDhqagTRDIR 357

                         170
                  ....*....|
gi 1933279497 172 ELSSSWFKTP 181
Cdd:PRK12650  358 RLGSLWRRMP 367
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
1-165 4.06e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 53.52  E-value: 4.06e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILF-SSIMNAWLTGEW---AINTNMNPMPMVLLSIA-------IAMKLGVAPFHFWLPEVLQGSTLQT 69
Cdd:PRK02504  165 KYLLIGAASSAIFLYgSSLLYGLSGGSTqlsAIALALITSPSLGLALAlvfviagIAFKISAVPFHQWTPDVYEGSPTPV 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  70 GLILSTWQKLAPMSLLIQL--------SENTNlFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGW-MIAIVkMS 140
Cdd:PRK02504  245 VAFLSVGSKAAGFALAIRLlvtafpsfDEQWK-LLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvMIGLV-AG 322

                         170       180
                  ....*....|....*....|....*
gi 1933279497 141 PQLSLLNFIIYILMtsslfLLFMNL 165
Cdd:PRK02504  323 TEAGYASMVFYLLA-----YLFMNL 342
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-161 1.26e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 48.92  E-value: 1.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEW----------AINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTG 70
Cdd:COG1008   165 KFFLYTLAGSLLMLVAILALYFLAGALtfdiaelaaaPLPLTAQLLLFLAFFIAFAVKVPMFPFHTWLPDAHVEAPTAGS 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  71 LILS---------------------TWQKLAPmslliqlsentnlfLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAH 129
Cdd:COG1008   245 VLLAgvllkmggygllrfalplfpeASAYFAP--------------LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSH 310

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1933279497 130 LGWM-IAIVKMSP---QLSLLNFIIYILMTSSLFLL 161
Cdd:COG1008   311 MGFVlLGIFALNPlglQGAVLQMVSHGLITAALFLL 346
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-134 7.53e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 46.47  E-value: 7.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGE-WAINTNMN-PMP-------MVLLSIAIAMKLGVAPFHFWLPEV-LQGSTLQTG 70
Cdd:TIGR01972 160 KFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELLNlPLPfgvqtwlFLAFFIAFAVKVPLFPLHTWLPDAhVEAPTAGSV 239

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  71 LILSTWQKLAP---MSLLIQLSENTNLF---LMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMI 134
Cdd:TIGR01972 240 ILAGVLLKMGTygfLRFNLPLFPDASLYfapVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 30-243 1.06e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 46.18  E-value: 1.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  30 NTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLM-----MTLGLLS 104
Cdd:MTH00209  170 NSNLGSVISVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFFPSLFSSPFfsmslLLLGSLT 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 105 TMIGGWGGINQTQLRKILAFSSIAHLGWM-IAIVKMSPQLSLLNFIIYILMTSSLFL-----LFMNLNTKNITELSSSWF 178
Cdd:MTH00209  250 TLMASMSANVESDLKKIIALSTLSQLGLMmCSLGLNQPELAFFHLITHALFKALLFIcagniIHSHGHSQDIRMVGNLWY 329

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1933279497 179 KTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILM-STLLSLFFYLRLSYVM 243
Cdd:MTH00209  330 QMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFlSTSLTAAYSMRLSYFS 395
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 39-160 1.16e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 45.73  E-value: 1.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  39 VLLSIAIAMKLGVAPFHFWLPE-----------VLQGSTLQTGL--ILSTWQKLAPMSLLiqlseNTnlfLMMTLGLLST 105
Cdd:PRK12665  213 AVLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAGLLTKVGVyaIIRTHTLLFPGGGL-----DT---LLMVVALLTM 284

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1933279497 106 MIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIY----ILMTSSLFL 160
Cdd:PRK12665  285 VVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYvahhITVQTTLFL 343
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-243 7.23e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 43.55  E-value: 7.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIM-----NAWLTGEWAINTNMNPMP-----MVLLSIAIAMKLGVAPFHFWLPEVLQG--STLQ 68
Cdd:PRK08376  176 KYMFVGSLASSMVLLGIALlygqyGTLNMAYLAVKMSENPTVvakiaLALFIAGLAMKSGAVPVHMWLPDAYPAapSSIS 255

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  69 TGLILSTWQKLAPMSLLI------QLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWM-----IAIV 137
Cdd:PRK08376  256 AMLLVIKQAGLYALARVLfsiygpAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMllglgVGLA 335

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 138 KMSPQLS-----------LLNFIIYILMTSSLFL----LFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTG 202
Cdd:PRK08376  336 ALGDPAMasygeialaggIYHIVNHALYKALLFLtagaVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNG 415

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1933279497 203 FLPKWLIAQELVKQNlNMFTFIILMSTLLSLFFYLRLSYVM 243
Cdd:PRK08376  416 FASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHTA 455
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
1-161 1.13e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.76  E-value: 1.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTG--EWAINT-NMNPMP-------MVLLSIAIAMKLGVAPFHFWLPEV-LQGSTLQT 69
Cdd:PRK06473  161 KFLLYTAISGILILVSFLGLVWLSGasSFDYEPlRSHTLPlstqlllLAPILVGFGIKIPLVPFHTWLPDAhVEASTPVS 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  70 GLILSTWQKLAPMSLLiqlSENTNLFL---------MMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMS 140
Cdd:PRK06473  241 VLLAGVLLKLGTYGLL---RFGVGLFPeawvylapwLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317

                         170       180
                  ....*....|....*....|....*
gi 1933279497 141 PQLSLL----NFIIYILMTSSLFLL 161
Cdd:PRK06473  318 TPLSILaavfQMISHGLISALLFLL 342
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 53-181 1.19e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 1.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  53 PFHFWLPEVLQGSTLQTGLILS-TWQK-----LAPMSLLIQLSENTnLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSS 126
Cdd:COG1009   229 PLHFWLPDAMEGPTPVSALLHAaTMVKagvylLARLSPLFALSPVW-LTVVAIIGAITALFAALIALAQTDIKRVLAYST 307

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1933279497 127 IAHLGWMIAIVKmspqLSLLNFIIYILMTSSLF--LLFM-------NLNTKNITELSSSWFKTP 181
Cdd:COG1009   308 VSQLGYMFLALG----VGAYVAALFHLLTHAFFkaLLFLgagsvihATGTRDIRKMGGLRKKMP 367
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 40-241 2.38e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 41.91  E-value: 2.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  40 LLSIAIAMKLGVAPFHFWLPE-----------VLQGSTLQTG--LILSTWQKLAPMSLLIQLSE--NTNLF--LMMTLGL 102
Cdd:PRK08668  201 FLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGayGFLLVLYVLPGTKLFSEFGTyrGVPLFnyILAWLGN 280

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497 103 LSTMIGGWGGINQTQLRKILAFSSIAHLGW-MIAIVKMSP---QLSLLNFIIYILMTSSLFLLFMNL----NTKNITELS 174
Cdd:PRK08668  281 ISIIVGTLMAILQEDIKKLIAYSSVANGGYiLVGLGLGTSlgfAGGLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMG 360

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933279497 175 SSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFFYLRLSY 241
Cdd:PRK08668  361 GLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 31-175 2.78e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 41.48  E-value: 2.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  31 TNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILS---TWQKLAPMSLLIQLSENTNLfLMMTLGLLSTMI 107
Cdd:PRK07234  180 ATADPEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSgvvVKAGVFPLVRCALDVPGLDL-IVRIFGVGTALL 258

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933279497 108 GGWGGINQTQLRKILAFSSIAHLGWMIAivkmSPQLSLLNFIIYILMTSSLFLLFMNLNTKNITELSS 175
Cdd:PRK07234  259 GVLFALLEKDLKRMLAFSTISQLGFILA----APLVGGLYALAHGLVKSTLFLCAGALPSRNFTELIS 322
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 34-137 3.22e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 41.83  E-value: 3.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  34 NPMPMVLLSIAIAM-------KLGVAPFHFWLPEVLQGST-----------LQTGLILSTwqKLAPMslliqLSENTN-L 94
Cdd:PRK12644  195 DPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTpvsaylhaaamVKAGIYLVA--RLAPG-----FADVPVwR 267

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1933279497  95 FLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIV 137
Cdd:PRK12644  268 PTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLV 310
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 39-160 8.58e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 40.33  E-value: 8.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  39 VLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQ---LSENTNLFLMMT--LGLLSTMIGGWGGI 113
Cdd:MTH00032  229 ILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRsfpLFEKAPLTLLIItiFGALTAFFAATVGL 308

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1933279497 114 NQTQLRKILAFSSIAHLGWMIAIVKM--SPQLSLLNFIIYILMTSSLFL 160
Cdd:MTH00032  309 VQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFL 357
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 95-235 1.38e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 39.33  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  95 FLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYI----LMTSSLFL----LFMNLN 166
Cdd:PRK12662  280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMvsgsISYHFG 359

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933279497 167 TKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMFTFIILMSTLLSLFF 235
Cdd:PRK12662  360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIY 428
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
 38-136 2.99e-03

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 38.67  E-value: 2.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  38 MVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSE----NTNLFLMMTL-GLLSTMIGGWGG 112
Cdd:TIGR00940 209 MVLVLLGAFTKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTPvfagTEAWFWIVGLaGLITLLWGSYFA 288

                          90       100
                  ....*....|....*....|....
gi 1933279497 113 INQTQLRKILAFSSIAHLGWMIAI 136
Cdd:TIGR00940 289 IFQQDLKGILAFSTISQLGLIMVL 312
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 11-146 3.95e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 38.01  E-value: 3.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  11 ALILFSSIMNAWLTGEWAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSE 90
Cdd:MTH00211  180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSP 259

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933279497  91 NTN-----LFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWM-IAIVKMSPQLSLL 146
Cdd:MTH00211  260 LFQnnqliLGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMmVTLGLNQPQLAFL 321
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
1-146 4.00e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 38.15  E-value: 4.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGE----------WAINTNMNPMPMVLLSIAIAMKLGVAPFHFWLPEV-LQGSTLQT 69
Cdd:PRK07363  161 KFLIYTAVSGLLVLAAFLGIVWLSGStsfdydaistQNLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPDAyTEASPAVA 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  70 GLILSTWQKLAPMSLL---IQLSENTNLFLMMTL---GLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQL 143
Cdd:PRK07363  241 ILLGGVLAKLGTYGLLrfgLQLFPQTWSLVAPGLaiiGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQL 320


                  ...
gi 1933279497 144 SLL 146
Cdd:PRK07363  321 SLL 323
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 43-173 4.19e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 37.98  E-value: 4.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  43 IAIAMKLGVAPFHFWLPEV-----LQGSTLQTGLILstwqKLAPMSL------LIQLSENTNLFLMMTLGLLSTMIGGWG 111
Cdd:MTH00226  238 LAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLvrlswpILPLGAQNLAPAVIAMGIVGIVYGSFA 313

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933279497 112 GINQTQLRKILAFSSIAHLGwMIAIVKMSPQLSLLNFIIYILM-----TSSLFLLFMNLNTKNITEL 173
Cdd:MTH00226  314 TCRQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIMLahgivSSLLFILVTILYDRHHTRL 379
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 43-131 5.95e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 37.72  E-value: 5.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497  43 IAIAMKLGVAPFHFWLPEV-----LQGSTLQTGLILstwqKLAPMSLL----IQLSENTNLF--LMMTLGLLSTMIGGWG 111
Cdd:MTH00217  214 LSLAIKIPKIPFHIWLPQAhveapVAGSVILAGVLL----KLGGYGFIrfswPLLPEASEYFspLIQTLSLLAIIYGSLT 289

                          90       100
                  ....*....|....*....|
gi 1933279497 112 GINQTQLRKILAFSSIAHLG 131
Cdd:MTH00217  290 TCRQVDLKRIIAYSSVAHMG 309
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-131 6.17e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 37.32  E-value: 6.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279497   1 KYFLTQAAASALILFSSIMNAWLTGEWAINTN---MNPMPMVL-------LSIAIAMKLGVAPFHFWLPEV-----LQGS 65
Cdd:PRK12561  141 KFILYTALASIFILVAGLALALSGDTFTFDLAelgAKSYPLALelllyagFLIAFGVKLPIFPLHTWLPDAhgeasAPVS 220

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933279497  66 TLQTGLILstwqKLAPMSLL---IQLSENTNLFL---MMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLG 131
Cdd:PRK12561  221 MILAGVLL----KMGGYALIrfnVQMLPDAHVYFapaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMG 288
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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