NCBI Conserved Domain Search

Conserved domains on [gi|1933122728|gb|QPD01050|]

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NADH dehydrogenase subunit 5, partial (mitochondrion) [Phlaeoba sp. Phlae_sp1]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

ND5

MTH00165

NADH dehydrogenase subunit 5; Provisional

1-309

3.40e-127

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214444 [Multi-domain] Cd Length: 573 Bit Score: 374.48 E-value: 3.40e-127

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKLA 80
Cdd:MTH00165  215 ALVHSSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLA 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  81 FFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWVN 160
Cdd:MTH00165  295 FFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLN 374

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 161 FFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPVPYFVVLPYYL 240
Cdd:MTH00165  375 FFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYL 454

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933122728 241 KFLTIFVVILGSYLGYFVSNISFSYGLFSLSMLSFVSFAGSMWFMPFLSTNFISYLPLKFGYYSSKSFD 309
Cdd:MTH00165  455 KLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFD 523

Name

Accession

Description

Interval

E-value

ND5

MTH00165

NADH dehydrogenase subunit 5; Provisional

1-309

3.40e-127

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214444 [Multi-domain] Cd Length: 573 Bit Score: 374.48 E-value: 3.40e-127

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKLA 80
Cdd:MTH00165  215 ALVHSSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLA 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  81 FFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWVN 160
Cdd:MTH00165  295 FFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLN 374

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 161 FFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPVPYFVVLPYYL 240
Cdd:MTH00165  375 FFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYL 454

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933122728 241 KFLTIFVVILGSYLGYFVSNISFSYGLFSLSMLSFVSFAGSMWFMPFLSTNFISYLPLKFGYYSSKSFD 309
Cdd:MTH00165  455 KLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFD 523

NuoL

COG1009

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...

1-258

1.65e-52

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase

Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 181.50 E-value: 1.65e-52

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYNC-GWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:COG1009   246 ALLHAATMVKAGVYLLARLSPLFALSPVwLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 AFFHLLAHALFKALLFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILE-MVCLSW 158
Cdd:COG1009   326 ALFHLLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGG 404

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 159 VNFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWL---------IFP 229
Cdd:COG1009   405 LGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLG 484

                         250       260
                  ....*....|....*....|....*....
gi 1933122728 230 VPYFVVLPYYLKFLTIFVVILGSYLGYFV 258
Cdd:COG1009   485 GELHLAHGLLLNALPLLLSLLGIALGYLL 513

NDH_I_L

TIGR01974

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...

1-258

1.11e-42

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]

Pssm-ID: 273905 [Multi-domain] Cd Length: 609 Bit Score: 154.75 E-value: 1.11e-42

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLD-VYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:TIGR01974 248 ALIHAATMVTAGVYLVARTSPLFElSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAA 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWV 159
Cdd:TIGR01974 328 AIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGT 407

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 160 NFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPV--------- 230
Cdd:TIGR01974 408 HSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsae 487

                         250       260       270
                  ....*....|....*....|....*....|
gi 1933122728 231 --PYFVVLPYYLKFLTIFVVILGSYLGYFV 258
Cdd:TIGR01974 488 paLEHHHVPALEIWSPTAVAILGILLAYLL 517

Proton_antipo_M

pfam00361

Proton-conducting membrane transporter; This is a family of membrane transporters that ...

5-170

5.02e-31

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.

Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 117.80 E-value: 5.02e-31

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   5 SSTLVTAGVYLLIRFSPMLDVYNCGWLLLFF--GCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYS---KL 79
Cdd:pfam00361 121 AATLVKAGGYGLIRRSLLYLPSSPFIQQILLilAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQA 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWV 159
Cdd:pfam00361 201 AIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASW 280

                         170
                  ....*....|.
gi 1933122728 160 NFFIFFLYFVS 170
Cdd:pfam00361 281 IFLVLAGVVGS 291

Name

Accession

Description

Interval

E-value

ND5

MTH00165

NADH dehydrogenase subunit 5; Provisional

1-309

3.40e-127

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214444 [Multi-domain] Cd Length: 573 Bit Score: 374.48 E-value: 3.40e-127

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKLA 80
Cdd:MTH00165  215 ALVHSSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLA 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  81 FFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWVN 160
Cdd:MTH00165  295 FFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLN 374

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 161 FFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPVPYFVVLPYYL 240
Cdd:MTH00165  375 FFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYL 454

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933122728 241 KFLTIFVVILGSYLGYFVSNISFSYGLFSLSMLSFVSFAGSMWFMPFLSTNFISYLPLKFGYYSSKSFD 309
Cdd:MTH00165  455 KLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFD 523

ND5

MTH00151

NADH dehydrogenase subunit 5; Provisional

1-309

3.96e-86

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214436 [Multi-domain] Cd Length: 565 Bit Score: 268.63 E-value: 3.96e-86

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYN-CGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:MTH00151  211 ALVHSSTLVTAGVFLLIRFFPFLSSSSgFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSL 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWV 159
Cdd:MTH00151  291 ALFHLYTHALFKALLFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPT 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 160 NFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPVPYFVVLPYY 239
Cdd:MTH00151  371 SLLMVLLMFVGVGLTALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSY 450

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 240 LKFLTIFVVILGSYLGYfvsnISFSYGLFSLSMLSFVSFAGSMWFMPFLSTNFISYLPLKFGYYSSKSFD 309
Cdd:MTH00151  451 LKLLIGFVILLGLFLSF----GFWDSGFSSSKMVKLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLD 516

ND5

MTH00209

NADH dehydrogenase subunit 5; Provisional

1-309

1.48e-83

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 177252 [Multi-domain] Cd Length: 564 Bit Score: 262.27 E-value: 1.48e-83

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPML-DVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:MTH00209  210 ALVHSSTLVTAGVYLLIRFFPSLfSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPEL 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWV 159
Cdd:MTH00209  290 AFFHLITHALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNM 369

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 160 NFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPVPYFVVLPYY 239
Cdd:MTH00209  370 PIMTLILMFLSTSLTAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWF 449

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 240 LKFLTIFVVILGSYLGYFVSNisfsYGLFSLSMLSFVSFAGSMWFMPFLSTNFISYLPLKFGYYSSKSFD 309
Cdd:MTH00209  450 LKLLPIMLILFGVLLMYMVLK----KNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLD 515

ND5

MTH00207

NADH dehydrogenase subunit 5; Provisional

1-309

1.13e-81

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 164753 [Multi-domain] Cd Length: 572 Bit Score: 257.39 E-value: 1.13e-81

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLD-VYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:MTH00207  214 ALVHSSTLVTAGVFLLIRFYPFLSsTYWFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKL 293

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWV 159
Cdd:MTH00207  294 ALFHLITHALFKALLFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPH 373

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 160 NFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPVPYFVVLPYY 239
Cdd:MTH00207  374 NSLMILMIFLATALTAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQ 453

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 240 LKFLTIFVVILGSYLGYFVSNISFSYGLFSLSMLSFVSFAGSMWFMPFLSTNFISYLPLKFGYYSSKSFD 309
Cdd:MTH00207  454 YKLLPLLVVTLGALLAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLD 523

ND5

MTH00211

NADH dehydrogenase subunit 5; Provisional

1-308

5.52e-66

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214459 [Multi-domain] Cd Length: 597 Bit Score: 217.13 E-value: 5.52e-66

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDV-YNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:MTH00211  239 ALLHSSTMVVAGVFLLIRLSPLFQNnQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQL 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWV 159
Cdd:MTH00211  319 AFLHICTHAFFKAMLFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYL 398

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 160 NFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPVPYFVV-LPY 238
Cdd:MTH00211  399 NAWALLLTLLATSLTAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPF 478

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 239 YLKFLTIFVVILGSYLGYFVSNisfsyGLFSLSMLSFVSFAGSMWFMPFLSTNFISYLPLKFGYYSSKSF 308
Cdd:MTH00211  479 LLKLMPLLVTIVGLLLGLELVN-----LTHKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGQTLSTHL 543

ND5

MTH00004

NADH dehydrogenase subunit 5; Validated

1-255

1.12e-63

NADH dehydrogenase subunit 5; Validated

Pssm-ID: 214398 [Multi-domain] Cd Length: 602 Bit Score: 211.18 E-value: 1.12e-63

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYN-----CgwllLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMG 75
Cdd:MTH00004  244 ALLHSSTMVVAGIFLLIRTHPLLQNNQtaltiC----LCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLN 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  76 YSKLAFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVC 155
Cdd:MTH00004  320 QPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLN 399

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 156 LSWVNFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPV-PYFV 234
Cdd:MTH00004  400 TSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPM 479

                         250       260
                  ....*....|....*....|.
gi 1933122728 235 VLPYYLKFLTIFVVILGSYLG 255
Cdd:MTH00004  480 TMPTTTKLAALIVTILGILLA 500

ND5

MTH00108

NADH dehydrogenase subunit 5; Provisional

1-251

1.19e-57

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 177170 [Multi-domain] Cd Length: 602 Bit Score: 195.07 E-value: 1.19e-57

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDvyNCGWLLLFFGCL----TMFMAgLGANFEFDLKKIIALSTLSQLGLMMSILAMGY 76
Cdd:MTH00108  245 ALLHSSTMVVAGVFLLIRFHPLME--NNKTIQTLTLCLgaitTLFTA-ICALTQNDIKKIVAFSTSSQLGLMMVTIGINQ 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  77 SKLAFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCL 156
Cdd:MTH00108  322 PHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANT 401

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 157 SWVNFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPVPYFVV- 235
Cdd:MTH00108  402 SYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPQMt 481

                         250
                  ....*....|....*.
gi 1933122728 236 LPYYLKFLTIFVVILG 251
Cdd:MTH00108  482 MPLYLKLTALAVTILG 497

ND5

MTH00208

NADH dehydrogenase subunit 5; Provisional

1-296

1.88e-57

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 177251 [Multi-domain] Cd Length: 628 Bit Score: 195.19 E-value: 1.88e-57

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDvyNCGWLL---LFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYS 77
Cdd:MTH00208  271 ALLHSSTMVVAGVFLLIRTSPLIS--NSPWFLslcLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQP 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  78 KLAFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLS 157
Cdd:MTH00208  349 NLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLAS 428

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 158 WVNFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPVPYFVVlP 237
Cdd:MTH00208  429 ISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLPPLTL-P 507

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1933122728 238 YYLKFLTIFVVILGSYLGyFVSNISFSYGLFSLSMLSFVSFAgsmWFMPFLSTNFISYL 296
Cdd:MTH00208  508 LILKSLPLIVTIIGAAFS-FSFLLSLSSNPINSNFFSFLSNQ---WFFVNISHSIIISF 562

ND5

MTH00066

NADH dehydrogenase subunit 5; Provisional

1-262

3.44e-57

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214416 [Multi-domain] Cd Length: 598 Bit Score: 193.97 E-value: 3.44e-57

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDvyNCGWLL---LFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYS 77
Cdd:MTH00066  242 ALLHSSTMVVAGIFLLIRFHPLLE--NNQTALticLCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQP 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  78 KLAFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLS 157
Cdd:MTH00066  320 QLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTS 399

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 158 WVNFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPV-PYFVVL 236
Cdd:MTH00066  400 NLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTM 479

                         250       260
                  ....*....|....*....|....*.
gi 1933122728 237 PYYLKFLTIFVVILGSYLGYFVSNIS 262
Cdd:MTH00066  480 PTFMKLAALLVTLLGLLIALDLAKIT 505

ND5

MTH00137

NADH dehydrogenase subunit 5; Provisional

1-186

1.68e-53

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214428 [Multi-domain] Cd Length: 611 Bit Score: 184.26 E-value: 1.68e-53

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLD-----VYNCGWLllffGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMG 75
Cdd:MTH00137  250 ALLHSSTMVVAGIFLLIRLSPLMEnnqtaLTTCLCL----GALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLN 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  76 YSKLAFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVC 155
Cdd:MTH00137  326 QPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALN 405

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1933122728 156 LSWVNFFIFFLYFVSTGLTASYSFRL-FYYSM 186
Cdd:MTH00137  406 TSHLNAWALTLTLIATSFTAVYSLRVvFFVSM 437

NuoL

COG1009

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...

1-258

1.65e-52

Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 181.50 E-value: 1.65e-52

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYNC-GWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:COG1009   246 ALLHAATMVKAGVYLLARLSPLFALSPVwLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 AFFHLLAHALFKALLFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILE-MVCLSW 158
Cdd:COG1009   326 ALFHLLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGG 404

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 159 VNFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWL---------IFP 229
Cdd:COG1009   405 LGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLG 484

                         250       260
                  ....*....|....*....|....*....
gi 1933122728 230 VPYFVVLPYYLKFLTIFVVILGSYLGYFV 258
Cdd:COG1009   485 GELHLAHGLLLNALPLLLSLLGIALGYLL 513

ND5

MTH00020

NADH dehydrogenase subunit 5; Reviewed

1-302

1.20e-45

NADH dehydrogenase subunit 5; Reviewed

Pssm-ID: 214400 [Multi-domain] Cd Length: 610 Bit Score: 162.94 E-value: 1.20e-45

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYNCGWLLL-FFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:MTH00020  245 ALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSI 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWV 159
Cdd:MTH00020  325 SLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYY 404

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 160 NFFIFFLYFVSTGLTASYSFRLFYYS-MSGDNNFYSSFSF-DDNSYYISFGMIALLFVAVFGGSLLSWLI--FPVPYFVV 235
Cdd:MTH00020  405 LIFAYWLGCFSALLTAFYSIRLIYLTfLSNTNLKKAVFFHlHEGDWNLLLPLGILALGSIFVGYLAKEMIwsFQITLPPI 484

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 236 LPYYLKFLTIFVVILGSYLG---YFVSNISFSYGLFSLSMLSFvSFAGSMWFMPFLSTNFISYLPLKFGY 302
Cdd:MTH00020  485 VPLSIKLLPVFLSLGGIGLViilYFYSSKTFRVPFSFIGRNSY-TFLGSAWQFNYILNYFLIKKIWKGGH 553

ND5

MTH00210

NADH dehydrogenase subunit 5; Provisional

1-303

4.76e-45

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 177253 [Multi-domain] Cd Length: 616 Bit Score: 161.33 E-value: 4.76e-45

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYNCGWLLL-FFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:MTH00210  246 ALIHAATMVTAGVFLIIRSGPLFEGSPLALTIVtILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYST 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWV 159
Cdd:MTH00210  326 SLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYY 405

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 160 NFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSS--FSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPVPYFVVLP 237
Cdd:MTH00210  406 IAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSKKEvfIGVHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVP 485

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122728 238 YYLKFLTIFVVILGSYLGYFVSN------ISFSYGLFSLSMLSFVSFAGSMWFMPFLSTNFISYLPLKFGYY 303
Cdd:MTH00210  486 NSIKMIPLLFSLLGALLAFVIYNsmvfliKISRRGVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHL 557

PRK06590

NADH:ubiquinone oxidoreductase subunit L; Reviewed

1-182

1.19e-43

NADH:ubiquinone oxidoreductase subunit L; Reviewed

Pssm-ID: 235836 [Multi-domain] Cd Length: 624 Bit Score: 157.63 E-value: 1.19e-43

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLD-VYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMsiLAMG---Y 76
Cdd:PRK06590  252 ALIHAATMVTAGVYLVARMSPLFElSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMF--LALGvgaY 329

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  77 SkLAFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEmVCL 156
Cdd:PRK06590  330 A-AAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAF 407

                         170       180
                  ....*....|....*....|....*.
gi 1933122728 157 SWVNFFIFFLYFVSTGLTASYSFRLF 182
Cdd:PRK06590  408 ANGHINLFVAGLVGAFLTAFYSFRLI 433

NDH_I_L

TIGR01974

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...

1-258

1.11e-42

Pssm-ID: 273905 [Multi-domain] Cd Length: 609 Bit Score: 154.75 E-value: 1.11e-42

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLD-VYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:TIGR01974 248 ALIHAATMVTAGVYLVARTSPLFElSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAA 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWV 159
Cdd:TIGR01974 328 AIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGT 407

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 160 NFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPV--------- 230
Cdd:TIGR01974 408 HSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsae 487

                         250       260       270
                  ....*....|....*....|....*....|
gi 1933122728 231 --PYFVVLPYYLKFLTIFVVILGSYLGYFV 258
Cdd:TIGR01974 488 paLEHHHVPALEIWSPTAVAILGILLAYLL 517

PRK07376

NADH-quinone oxidoreductase subunit L;

1-189

3.59e-36

NADH-quinone oxidoreductase subunit L;

Pssm-ID: 236005 [Multi-domain] Cd Length: 673 Bit Score: 137.08 E-value: 3.59e-36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLD-VYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMsiLAMG---Y 76
Cdd:PRK07376  262 ALIHAATMVAAGVFLVARMYPVFEqFPAVMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMV--MAMGcgaY 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  77 SKlAFFHLLAHALFKALLFMCAGSMIHNLKD--------SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKD 148
Cdd:PRK07376  340 SA-GLFHLMTHAYFKAMLFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKD 418

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1933122728 149 MILEMVCLSwvNFFIFFLYFVSTGLTASYSFRLFYYSMSGD 189
Cdd:PRK07376  419 EILGAAFEA--NPALWFVGFLTAGMTAFYMFRMYFLTFEGE 457

Proton_antipo_M

pfam00361

Proton-conducting membrane transporter; This is a family of membrane transporters that ...

5-170

5.02e-31

Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 117.80 E-value: 5.02e-31

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   5 SSTLVTAGVYLLIRFSPMLDVYNCGWLLLFF--GCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYS---KL 79
Cdd:pfam00361 121 AATLVKAGGYGLIRRSLLYLPSSPFIQQILLilAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQA 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWV 159
Cdd:pfam00361 201 AIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASW 280

                         170
                  ....*....|.
gi 1933122728 160 NFFIFFLYFVS 170
Cdd:pfam00361 281 IFLVLAGVVGS 291

ND5

MTH00032

NADH dehydrogenase subunit 5; Provisional

1-153

6.63e-30

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214407 [Multi-domain] Cd Length: 669 Bit Score: 119.29 E-value: 6.63e-30

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYNCGWLLL-FFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAM-GYSK 78
Cdd:MTH00032  260 ALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItIFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHN 339

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1933122728  79 LAFFHLLAHALFKALLFMCAGSMIHNLK-DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEM 153
Cdd:MTH00032  340 VGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415

ndhF

CHL00025

NADH dehydrogenase subunit 5

1-207

3.18e-29

NADH dehydrogenase subunit 5

Pssm-ID: 214338 [Multi-domain] Cd Length: 741 Bit Score: 117.30 E-value: 3.18e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVY----NcgwLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY 76
Cdd:CHL00025  262 ALIHAATMVAAGIFLVARLLPLFIVIpyimN---LISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGS 338

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  77 SKLAFFHLLAHALFKALLFMCAGSMIHNL--------KDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKD 148
Cdd:CHL00025  339 YRAALFHLITHAYSKALLFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKD 418

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122728 149 MILEMvclSWVNFFIF-FLYFVSTGLTASYSFRLFYYSMSGDNNFYS-SFSFDDNS--YYISF 207
Cdd:CHL00025  419 EILND---SWLYSPIFaIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFqNYSGKKNSsfYSISL 478

NADH5_C

pfam06455

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...

177-309

3.75e-29

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.

Pssm-ID: 368917 [Multi-domain] Cd Length: 181 Bit Score: 109.95 E-value: 3.75e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 177 YSFRLFYYSMSGDNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIFPVPYFVVLPYYLKFLTIFVVILGSYLGY 256
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1933122728 257 FVSNISFSYgLFSLSMLSFVSFAGSMWFMPFLSTNFISYLPLKFGYYSSKSFD 309
Cdd:pfam06455  81 ELSNLSNKQ-LKKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQID 132

ND5

MTH00095

NADH dehydrogenase subunit 5; Provisional

1-308

2.74e-27

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 177158 [Multi-domain] Cd Length: 527 Bit Score: 111.16 E-value: 2.74e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKLA 80
Cdd:MTH00095  199 SLVHSSTLVTAGLILLMNFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVS 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  81 FFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWVN 160
Cdd:MTH00095  279 FIHLLSHALFKSCLFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYM 358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 161 FFIFFLYFVSTGLTASYSFRLFYysmsgdnNFYSSFSFDDNSYYISFGMIALLFVAVFGG-SLLSWLIFPVPYFVVLPYY 239
Cdd:MTH00095  359 IFFSLMFFFSVFLTFGYSYRLWK-------SFFLSFSKVVNVYSSSVLMNFLSLMLVFFSvFFLWWLNFNLLNLPSLFLY 431

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933122728 240 LKFLTIFVVILgsyLGYFVSNISFSYGLFSLSMLSFVSFAGSMWFMPFLSTNFISYLPLKFGYYSSKSF 308
Cdd:MTH00095  432 LDFYVPLFYLF---MIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYKGFNFF 497

PRK12650

DUF4040 family protein;

1-181

1.53e-26

DUF4040 family protein;

Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 109.75 E-value: 1.53e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPML-DVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYS-- 77
Cdd:PRK12650  243 AFLHAAAVVKAGIYLLLRFSPVFhDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPfa 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  78 -KLAFFHLLAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCL 156
Cdd:PRK12650  323 lTAAVVHTLAHALFKSSLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLE 401

                         170       180
                  ....*....|....*....|....*....
gi 1933122728 157 SWVNFFIFFLYFVSTGLTA----SYSFRL 181
Cdd:PRK12650  402 APGGNAGVVLLLVGAALGAvftfAYSARL 430

HyfB

COG0651

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...

5-184

7.60e-26

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];

Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 106.00 E-value: 7.60e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   5 SSTLVTAGVYLLIRFSPMLDVYN----CGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL- 79
Cdd:COG0651   244 SGLLTKVGVYAILRVLTLLFGADpalfLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGl 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 --AFFHLLAHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVcLS 157
Cdd:COG0651   324 agALFHLLNHALAKALLFLAAGAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LE 401

                         170       180
                  ....*....|....*....|....*..
gi 1933122728 158 WVNFFIFFLYFVSTGLTASYSFRLFYY 184
Cdd:COG0651   402 AGAWLLAAVLLLSSLLTLAYFVRIFGR 428

PRK12647

putative monovalent cation/H+ antiporter subunit A; Reviewed

1-152

1.28e-24

putative monovalent cation/H+ antiporter subunit A; Reviewed

Pssm-ID: 237156 [Multi-domain] Cd Length: 761 Bit Score: 103.85 E-value: 1.28e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPML-DVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYS-- 77
Cdd:PRK12647  230 AYLHSATMVKAGIYLLARLNPVLgGTPLWQTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSEla 309

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1933122728  78 -KLAFFHLLAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILE 152
Cdd:PRK12647  310 iKAAVLFLVAHSLYKGALFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384

PRK12648

putative monovalent cation/H+ antiporter subunit A; Reviewed

1-180

1.78e-23

putative monovalent cation/H+ antiporter subunit A; Reviewed

Pssm-ID: 237157 [Multi-domain] Cd Length: 948 Bit Score: 100.65 E-value: 1.78e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDvyncG-----WLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMG 75
Cdd:PRK12648  242 AYLHSATMVKAGVFLLARLWPVLA----GteewfWIVGGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLG 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  76 ySKLA----FFHLLAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDM-- 149
Cdd:PRK12648  318 -SPLAavaaIFHIINHATFKASLFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMff 395

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1933122728 150 --ILEMVCLSWVNFFIFFLYFVSTGLTASYSFR 180
Cdd:PRK12648  396 aeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428

PRK12646

DUF4040 family protein;

1-152

4.60e-23

DUF4040 family protein;

Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 99.44 E-value: 4.60e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYNC-GWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMG---- 75
Cdd:PRK12646  245 AYLHSATMVKAGIFLLFRFTPLLGLSNMyIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggya 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  76 ------YSKL-------AFFHLLAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLA 142
Cdd:PRK12646  325 qhqqdaIASIyvfvlfaALFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLN 403

                         170
                  ....*....|
gi 1933122728 143 GFYSKDMILE 152
Cdd:PRK12646  404 GFLSKEMFLD 413

PRK12644

putative monovalent cation/H+ antiporter subunit A; Reviewed

1-183

5.10e-23

putative monovalent cation/H+ antiporter subunit A; Reviewed

Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 99.23 E-value: 5.10e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPML-DVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:PRK12644  238 AYLHAAAMVKAGIYLVARLAPGFaDVPVWRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDA 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 AFFHL---LAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMV-- 154
Cdd:PRK12644  318 ALAGLamlLAHALFKAALFLVVGIIDHS-TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlh 396

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1933122728 155 --CLSWVNFFIFFLYFVSTGLTASYSFRLFY 183
Cdd:PRK12644  397 dgALGPAGPVVLAGIVLGSILTVAYSLRFLW 427

PRK12645

monovalent cation/H+ antiporter subunit A; Reviewed

1-188

9.66e-23

monovalent cation/H+ antiporter subunit A; Reviewed

Pssm-ID: 237155 [Multi-domain] Cd Length: 800 Bit Score: 98.46 E-value: 9.66e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYNCG-WLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:PRK12645  245 AYLHSATMVKAGIYLVARFTPIFAGSQVWfWTVTLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASL 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 ----------------AFFHLLAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAG 143
Cdd:PRK12645  325 hyqgddskiyaaaitaAIFHLINHATFKGSLFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNG 403

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1933122728 144 FYSKDMILE-MVCLSWVNFF--------IFFLYFVSTGLTASYSFRLFYYSMSG 188
Cdd:PRK12645  404 FLSKEMFFEsMLNATEANLFsldtwgvlFPVIAWVASVFTFVYSIIFIFKTFFG 457

PRK08375

putative monovalent cation/H+ antiporter subunit D; Reviewed

1-184

4.84e-22

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 95.72 E-value: 4.84e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFS------PMLDVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAM 74
Cdd:PRK08375  237 TALLSGLVTKVAVYALIRIYftvfggDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLAL 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  75 GYSKL---AFFHLLAHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMIL 151
Cdd:PRK08375  317 LTPLAlaaGLLHLLHHALMKGALFLAAGAIEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLV 395

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1933122728 152 EMVCLSWVNFFIFFLYFVSTgLTASYSFRLFYY 184
Cdd:PRK08375  396 VGAVEAGQWLVLAVLLASSL-LALLYFLRIWYR 427

PRK12649

putative monovalent cation/H+ antiporter subunit A; Reviewed

1-152

2.73e-19

putative monovalent cation/H+ antiporter subunit A; Reviewed

Pssm-ID: 183649 [Multi-domain] Cd Length: 789 Bit Score: 88.35 E-value: 2.73e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVYNcGWLLLF--FGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIlaMGYSK 78
Cdd:PRK12649  249 AFLHSATMVKAGVYLVARIHPIFSGTE-AWFILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTM--YGYTT 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  79 ---------LAFFHLLAHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDM 149
Cdd:PRK12649  326 yhepglgvaAATFHLLNHATFKACLFLVAGIVAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEM 404


                  ...
gi 1933122728 150 ILE 152
Cdd:PRK12649  405 FYE 407

PRK12667

putative monovalent cation/H+ antiporter subunit D; Reviewed

5-183

2.59e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 78.86 E-value: 2.59e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   5 SSTLVTAGVYLLIRF-----------SPMLDVYncGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILA 73
Cdd:PRK12667  262 SGLVVNVGAYAIIRFlytifgispslIDFRAAL--SPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIG 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  74 MGySKL----AFFHLLAHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDM 149
Cdd:PRK12667  340 IG-TQLglaaALFHIINHAIAKSLLFLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLL 417

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1933122728 150 ILEMVCLSwvNFFIFFLY-FVSTGLTASYSFRLFY 183
Cdd:PRK12667  418 LFNALLES--GFYLPALVlLIASAISLVGYFRAWY 450

PRK08376

putative monovalent cation/H+ antiporter subunit D; Reviewed

11-183

2.81e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 78.99 E-value: 2.81e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  11 AGVYLLIR-----FSPMLDVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMM-----SILAMGYSKL- 79
Cdd:PRK08376  264 AGLYALARvlfsiYGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglgvGLAALGDPAMa 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  80 ---------AFFHLLAHALFKALLFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMI 150
Cdd:PRK08376  344 sygeialagGIYHIVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1933122728 151 LEMVCLswVNFFIFFLYFVSTGLTASYSFRLFY 183
Cdd:PRK08376  423 YESSAL--FNPILGVIAMIGSVLTLASFVKVFH 453

ND5

MTH00063

NADH dehydrogenase subunit 5; Provisional

2-295

4.21e-16

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214414 [Multi-domain] Cd Length: 522 Bit Score: 78.38 E-value: 4.21e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   2 LVHSSTLVTAGVYLLIRFSPMLDVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKLAF 81
Cdd:MTH00063  193 LVHSSTLVAAGVWFVMRYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSL 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  82 FHLLAHALFKALLFMCAGSMIHNLKDSQDIR-----FMGSIVNFMPLTSVCfnvssLSLCGMPFLAGFYSKDMILEMVCL 156
Cdd:MTH00063  273 FQLVSHGVSKCLLFMLVGDVMSGSGGSQSSNcvyssILYGSWNLFYLFLLV-----LGLSGVPFIGVFFSKHFLLSSFSS 347

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 157 SWVNFFIFFLYFVSTGLTASYSFRLFYYSMSGDNNFYSSFSFDdnsYYISFGMIAL-LFVAVFGGSLLSwlifpvpYFVV 235
Cdd:MTH00063  348 VVFNVSLLLVVILCVFLSYLYSFRLCLILFGVKSSLSSGVRFL---FFNSGLMVFLwLFINYYVFLLLD-------EVVY 417

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1933122728 236 LPYYLKFLTIFVVILGSYLGY-FVSNISFSYGLFSLSMLSFVSFAGSMWFMPFLSTNFISY 295
Cdd:MTH00063  418 LGVFISLVLLLVQLLGLLVGVlFYDSNLFSNWSSSLFGCDNLVELFYELFYSILDLVSLFF 478

PRK07234

putative monovalent cation/H+ antiporter subunit D; Reviewed

1-152

8.87e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 77.30 E-value: 8.87e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSpmLDVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGysklA 80
Cdd:PRK07234  219 SALLSGVVVKAGVFPLVRCA--LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----G 292

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122728  81 FFHlLAHALFKALLFMCAGSmIHNLKDSQDIRFMGSIVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDMILE 152
Cdd:PRK07234  293 LYA-LAHGLVKSTLFLCAGA-LPSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357

PRK07390

NAD(P)H-quinone oxidoreductase subunit F; Validated

6-175

1.69e-15

NAD(P)H-quinone oxidoreductase subunit F; Validated

Pssm-ID: 236008 [Multi-domain] Cd Length: 613 Bit Score: 76.87 E-value: 1.69e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   6 STLVTAGVYLLIRFSPML-------DVyncgwlLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSK 78
Cdd:PRK07390  260 SVVVATGAWVLIKLQPVLalspvalTV------LIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPD 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  79 LAFFHLLAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdmILEMVCLSW 158
Cdd:PRK07390  334 IALLLLLTHAIAKALLFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLW 409

                         170
                  ....*....|....*...
gi 1933122728 159 VNFFIFFLYFVST-GLTA 175
Cdd:PRK07390  410 AVSPWLVGVLLLVnALTA 427

PRK08377

NADH dehydrogenase subunit N; Validated

5-181

1.85e-15

NADH dehydrogenase subunit N; Validated

Pssm-ID: 181406 [Multi-domain] Cd Length: 494 Bit Score: 76.34 E-value: 1.85e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   5 SSTLVTAGVYLLIRFSPMLDVYNCG----WLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYS--- 77
Cdd:PRK08377  245 SAFVVKAGLYAMARILYLMQNANGWssvlKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQagv 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  78 KLAFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILeMVCLS 157
Cdd:PRK08377  325 DAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLS 402

                         170       180
                  ....*....|....*....|....
gi 1933122728 158 WVNFFIFFLYFVSTGLTASYSFRL 181
Cdd:PRK08377  403 AGYTWPVALVLGASVVEAVYYFRL 426

PRK08667

hydrogenase membrane subunit; Validated

5-152

1.98e-13

hydrogenase membrane subunit; Validated

Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 70.53 E-value: 1.98e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   5 SSTLVTAGVYLLIRFspMLDVYN----CGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMM----------- 69
Cdd:PRK08667  244 SGVMLKVAVYGLVRF--LMDVLSpelwWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILmgiglyvifgv 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  70 ---SILAMGYSKLAFFHLLAHALFKALLFMCAGSMIHNLKDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYS 146
Cdd:PRK08667  322 yglDTLALLALGGALFHSLNHALFKSLLFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFAS 400


                  ....*.
gi 1933122728 147 KDMILE 152
Cdd:PRK08667  401 ELLLYE 406

PRK08668

NADH dehydrogenase subunit M; Validated

9-183

8.69e-13

NADH dehydrogenase subunit M; Validated

Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 68.48 E-value: 8.69e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   9 VTAGVYLLIRFSPMLDVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYS---KLAFFHLL 85
Cdd:PRK08668  252 VLPGTKLFSEFGTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSlgfAGGLFHVF 331

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  86 AHALFKALLFMCAGSMIHNLKDSQdIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVcLSWVNFFIFF 165
Cdd:PRK08668  332 NHALFKGLFFLIFAAVIYRTGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAF 409

                         170
                  ....*....|....*...
gi 1933122728 166 LYFVSTGLTASYSFRLFY 183
Cdd:PRK08668  410 MAFFGSIGSFLYVFRPLA 427

PRK12668

Na(+)/H(+) antiporter subunit D;

12-151

1.18e-12

Na(+)/H(+) antiporter subunit D;

Pssm-ID: 237168 [Multi-domain] Cd Length: 581 Bit Score: 68.00 E-value: 1.18e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  12 GVYLLIRFSPmldvyncGWLLLFFgcLTMFMAGLGANF---EFDLKKIIALSTLSQLGLMMSILAMGySKL----AFFHL 84
Cdd:PRK12668  229 AVYALARAFP-------GTELLIY--IGAAMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIG-TALaingAVAHA 298

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933122728  85 LAHALFKALLFMCAGSMIHNLKDSqDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMIL 151
Cdd:PRK12668  299 FNHILYKGLLFMSAGAVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364

PRK08168

NADH-quinone oxidoreductase subunit L;

1-100

1.44e-12

NADH-quinone oxidoreductase subunit L;

Pssm-ID: 236171 [Multi-domain] Cd Length: 516 Bit Score: 67.80 E-value: 1.44e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSStLVTAGVYLLIRFSPMLDVYNCG-WLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:PRK08168  235 ALLHAG-VVNLGGFVLIRFAPLLEQAPPArWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYEL 313

                          90       100
                  ....*....|....*....|.
gi 1933122728  80 AFFHLLAHALFKALLFMCAGS 100
Cdd:PRK08168  314 ALLHLVAHSLYKAHAFLSASE 334

NuoM

COG1008

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...

3-182

2.87e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase

Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 66.64 E-value: 2.87e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   3 VHSSTLVTAGVYLLIRFS-PML--DVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILAMGYSK 78
Cdd:COG1008   246 LLAGVLLKMGGYGLLRFAlPLFpeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLG 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  79 L--AFFHLLAHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILemVCL 156
Cdd:COG1008   326 LqgAVLQMVSHGLITAALFLLVGVLYDRTH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGA 402

                         170       180
                  ....*....|....*....|....*.
gi 1933122728 157 SWVNFFIFFLYFVSTGLTASYSFRLF 182
Cdd:COG1008   403 FQVNPWLAILAALGLILTAAYLLWMY 428

PRK06589

putative monovalent cation/H+ antiporter subunit D; Reviewed

1-183

3.29e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 66.76 E-value: 3.29e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIR-------FSPMLDVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMM---S 70
Cdd:PRK06589  245 ALLHAVIVVKTGLFCIYKillyifgLSYLQRIFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaF 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  71 ILAMGYSKLAFFHLLAHALFKALLFMCAGSmIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMI 150
Cdd:PRK06589  325 ILTPKALGAAILHLVSHSFAKICLFYSMGS-IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLI 403

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1933122728 151 LEMVCLS---WVNFFIFFLYFVSTGLTASYSFRLFY 183
Cdd:PRK06589  404 LLAASEQnqpWLSIIVMLVVIASSILSALYLLKILS 439

PRK06521

hydrogenase 4 subunit B; Validated

29-147

5.85e-12

hydrogenase 4 subunit B; Validated

Pssm-ID: 235820 [Multi-domain] Cd Length: 667 Bit Score: 66.07 E-value: 5.85e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  29 GWLLLFFGCLTMFMAGLGANFEFDLKKIIALST-------LSQLGLMMSILAMGYSKLA-------FFHLLAHALFKALL 94
Cdd:PRK06521  276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTienigiiFVGLGLAMVFIAYGMPLLAalaltaaLYHLLNHALFKSLL 355

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1933122728  95 FMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 147
Cdd:PRK06521  356 FLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSE 407

PRK06525

hydrogenase 4 subunit D; Validated

1-151

8.65e-12

hydrogenase 4 subunit D; Validated

Pssm-ID: 180606 [Multi-domain] Cd Length: 479 Bit Score: 65.38 E-value: 8.65e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSSTLVTAGVYLLIRFSPMLDVY--NCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGY-- 76
Cdd:PRK06525  242 AYLHAASMVKVGVYIFARAIQSMGPIphVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAIlg 321

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933122728  77 SKLAF----FHLLAHALFKALLFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMIL 151
Cdd:PRK06525  322 SRLALegsiAYIFNHAFAKSLFFLVAGALSYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399

PRK08042

formate hydrogenlyase subunit 3; Reviewed

28-144

3.71e-11

formate hydrogenlyase subunit 3; Reviewed

Pssm-ID: 181206 [Multi-domain] Cd Length: 593 Bit Score: 63.69 E-value: 3.71e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  28 CGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKLA--------------FFHLLAHALFKAL 93
Cdd:PRK08042  244 WGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSV 323

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1933122728  94 LFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGF 144
Cdd:PRK08042  324 LFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373

PRK07691

putative monovalent cation/H+ antiporter subunit D; Reviewed

8-193

8.59e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 62.27 E-value: 8.59e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   8 LVTAGVYLLIRFSPMLDVYNCGW---LLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL---AF 81
Cdd:PRK07691  251 LTKVGVYAIARTFTLFFSHDTSFthyLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGmigAI 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  82 FHLLAHALFKALLFMCAGSMIHnLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEmVCLSWVNF 161
Cdd:PRK07691  331 YYLIHDMIVKAALFLLIGIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE-GTFEAGFY 408

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1933122728 162 FIFFLYFVSTGLTASYSFRLFYYSMSGDNNFY 193
Cdd:PRK07691  409 VSGIIVLLSSLLVLYSVIKIFLKGFWGEPKGY 440

PRK12663

Na+/H+ antiporter subunit D;

12-151

2.78e-08

Na+/H+ antiporter subunit D;

Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 54.57 E-value: 2.78e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  12 GVYLLIRFSPMLDVYNCG---WLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKL---AFFHLL 85
Cdd:PRK12663  252 GIYALIRVFTLLFPQEREllhPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLV 331

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1933122728  86 AHALFKALLFMCAGSMIHnLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMIL 151
Cdd:PRK12663  332 HDMVVKTALFLIAGSLVR-LTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396

PRK05846

NADH:ubiquinone oxidoreductase subunit M; Reviewed

52-189

5.72e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed

Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 53.67 E-value: 5.72e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  52 DLKKIIALSTLSQLG-LMMSILAMGYSKL--AFFHLLAHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCF 128
Cdd:PRK05846  300 DIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFF 378

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1933122728 129 NVSSLSLCGMPFLAGFYSKDMILemVCLSWVNFFIFFLYFVSTGLTASYSFRLFYYSMSGD 189
Cdd:PRK05846  379 LFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGP 437

PRK08601

NADH dehydrogenase subunit 5; Validated

1-100

6.64e-08

NADH dehydrogenase subunit 5; Validated

Pssm-ID: 236310 [Multi-domain] Cd Length: 509 Bit Score: 53.50 E-value: 6.64e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   1 ALVHSStLVTAGVYLLIRFSPMLDVYNCGWLLLFFGCLTMFMaGLGANF-EFDLKKIIALSTLSQLGLMMSILAMGYSKL 79
Cdd:PRK08601  239 AIMHAG-LVNAGGIMLTRFSPLFHDDIAQILLLIFASISVLI-GTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSA 316

                          90       100
                  ....*....|....*....|.
gi 1933122728  80 AFFHLLAHALFKALLFMCAGS 100
Cdd:PRK08601  317 AIIHLILHGLFKATLFLQSGS 337

PRK06458

hydrogenase 4 subunit F; Validated

29-151

9.43e-08

hydrogenase 4 subunit F; Validated

Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 53.01 E-value: 9.43e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  29 GWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGySKLAFF----HLLAHALFKALLFMCAGSMIHN 104
Cdd:PRK06458  281 GRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIG-GPLGIFaallHMLNHSLTKSAIFFASGNVLQK 359

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1933122728 105 lKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMIL 151
Cdd:PRK06458  360 -YGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405

PRK12665

putative monovalent cation/H+ antiporter subunit D; Reviewed

8-152

3.10e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 51.51 E-value: 3.10e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   8 LVTAGVYLLIRFSPMLDVYNCGW-LLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAM----GYSKlAFF 82
Cdd:PRK12665  251 LTKVGVYAIIRTHTLLFPGGGLDtLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALstvaGLSG-AIY 329

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  83 HLLAHALFKALLFMCAGsMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILE 152
Cdd:PRK12665  330 YVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398

PRK06277

energy conserving hydrogenase EhbF;

7-152

9.19e-07

energy conserving hydrogenase EhbF;

Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 50.03 E-value: 9.19e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   7 TLVTAGVYLLIRFSPMLDVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMG--YSKLA-FFH 83
Cdd:PRK06277  244 VLVALMLVIFKLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGtpLGIVAgIFH 323

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933122728  84 LLAHALFKALLFMCAGSmIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILE 152
Cdd:PRK06277  324 AINHVIYKSALFLGAGI-VSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391

PRK08676

hydrogenase membrane subunit; Validated

3-151

1.56e-06

hydrogenase membrane subunit; Validated

Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 49.37 E-value: 1.56e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728   3 VHSSTLVTAGVYLLIRFSPMLDVYNCGW----LLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSK 78
Cdd:PRK08676  243 LLSGTVLNIGIYGILRLSALLRQSGAAEqfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPL 322

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1933122728  79 LAF---FHLLAHALFKALLFMCAGsMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMIL 151
Cdd:PRK08676  323 ALFwmlFHMLAHSLVKSGLFFSAG-ILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFIL 397

PRK12662

putative monovalent cation/H+ antiporter subunit D; Reviewed

29-147

2.98e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 45.50 E-value: 2.98e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  29 GWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMmsILAMG---YSKL--AFFHLLAHALFKALLFMCAGSMIH 103
Cdd:PRK12662  279 NNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYI--ILAVSlntYYGLaaAVAYIVNHSIVKSALFMVSGSISY 356

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1933122728 104 NLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 147
Cdd:PRK12662  357 HF-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399

NuoN

COG1007

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...

30-147

1.16e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase

Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 43.57 E-value: 1.16e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  30 WLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYS---KLAFFHLLAHALFKALLFMCAGSMIHNLK 106
Cdd:COG1007   270 LLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPlgvSAALFYLLAYLFMNLGAFAVILLLSRKGG 349

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1933122728 107 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 147
Cdd:COG1007   350 EAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390

ND2

MTH00160

NADH dehydrogenase subunit 2; Provisional

22-228

2.07e-03

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 39.42 E-value: 2.07e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  22 MLDVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSKLAFFHLLAHALFKALLFMCAGSM 101
Cdd:MTH00160  136 LLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFN 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728 102 IHNLKDSQDIRFMGSIVNFMpltsvcFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWVNFFIFFLYFVSTgLTASYSFRL 181
Cdd:MTH00160  216 IFFLNQLFNSNNKSKKIKFL------LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSL-ITLYFYLRI 288

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1933122728 182 FYYSMSGdNNFYSSFSFDDNSYYISFGMIALLFVAVFGGSLLSWLIF 228
Cdd:MTH00160  289 SYSSLML-NYNKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFL 334

PRK12664

putative monovalent cation/H+ antiporter subunit D; Reviewed

22-250

2.29e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 237164 [Multi-domain] Cd Length: 527 Bit Score: 39.33 E-value: 2.29e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  22 MLDVYNCGWLLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGYSK-----LAFFHLLAHALFKALLFM 96
Cdd:PRK12664  194 LLLFFSGEEILLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGSSgvaigILILQIVLSVVYQTLLFM 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  97 CAGSMIHNLKdSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDMILEMVCLSWVNFFIFFLYF--VSTGLT 174
Cdd:PRK12664  274 VADSVINRTR-KFNLNRVGGLFK-MSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLTLVLYKKLFliCSLLLF 351

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933122728 175 ASYSFRLFYYSMSGDNNfySSFSFDDNSYYISFGMIALLFVAVFGGSLLSW-LIFPVPYFVVLP--YYLKFLTIFVVIL 250
Cdd:PRK12664  352 ASVGLKFFWYAFISKSK--SKPEAEKVYIGSKLSMIILVLICVVLGMFNSYlLFYNLPSFVYTLksVALQLGLILGTTL 428

ND2

MTH00112

NADH dehydrogenase subunit 2; Provisional

31-154

3.94e-03

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 38.27 E-value: 3.94e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122728  31 LLLFFGCLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILAMGySKLAFFHLLAHALFKALLFMcagsMIHNLKdSQD 110
Cdd:MTH00112  153 LLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYS-PKLTLLTFYIYILMTTPMFL----TLNTTS-TKT 226

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1933122728 111 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDMIL-EMV 154
Cdd:MTH00112  227 LKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILqELT 271

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01