NCBI Conserved Domain Search

Conserved domains on [gi|1933122726|gb|QPD01049|]

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NADH dehydrogenase subunit 5, partial (mitochondrion) [Gomphocerus sp. Gomph_sp3]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

ND5

MTH00165

NADH dehydrogenase subunit 5; Provisional

1-306

2.61e-127

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214444 [Multi-domain] Cd Length: 573 Bit Score: 374.48 E-value: 2.61e-127

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLA 80
Cdd:MTH00165  215 ALVHSSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLA 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  81 FFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWVN 160
Cdd:MTH00165  295 FFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLN 374

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 161 CLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIALPYYL 240
Cdd:MTH00165  375 FFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYL 454

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1933122726 241 KFLTIIVVIMGSYLGYFISNFGFSYNLFSLSMLPYVSFVGSMWFMPFLSTNFISYLPLKMGYYSSK 306
Cdd:MTH00165  455 KLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLK 520

Name

Accession

Description

Interval

E-value

ND5

MTH00165

NADH dehydrogenase subunit 5; Provisional

1-306

2.61e-127

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214444 [Multi-domain] Cd Length: 573 Bit Score: 374.48 E-value: 2.61e-127

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLA 80
Cdd:MTH00165  215 ALVHSSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLA 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  81 FFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWVN 160
Cdd:MTH00165  295 FFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLN 374

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 161 CLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIALPYYL 240
Cdd:MTH00165  375 FFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYL 454

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1933122726 241 KFLTIIVVIMGSYLGYFISNFGFSYNLFSLSMLPYVSFVGSMWFMPFLSTNFISYLPLKMGYYSSK 306
Cdd:MTH00165  455 KLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLK 520

NuoL

COG1009

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...

1-258

4.76e-54

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase

Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 185.36 E-value: 4.76e-54

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYSC-GWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:COG1009   246 ALLHAATMVKAGVYLLARLSPLFALSPVwLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILE-MVCLSW 158
Cdd:COG1009   326 ALFHLLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGG 404

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 159 VNCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWL---------IFP 229
Cdd:COG1009   405 LGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLG 484

                         250       260
                  ....*....|....*....|....*....
gi 1933122726 230 IPHMIALPYYLKFLTIIVVIMGSYLGYFI 258
Cdd:COG1009   485 GELHLAHGLLLNALPLLLSLLGIALGYLL 513

NDH_I_L

TIGR01974

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...

1-258

2.11e-45

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]

Pssm-ID: 273905 [Multi-domain] Cd Length: 609 Bit Score: 162.07 E-value: 2.11e-45

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYS-CGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:TIGR01974 248 ALIHAATMVTAGVYLVARTSPLFELSPtALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAA 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWV 159
Cdd:TIGR01974 328 AIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGT 407

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 160 NCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPI--------- 230
Cdd:TIGR01974 408 HSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsae 487

                         250       260       270
                  ....*....|....*....|....*....|
gi 1933122726 231 --PHMIALPYYLKFLTIIVVIMGSYLGYFI 258
Cdd:TIGR01974 488 paLEHHHVPALEIWSPTAVAILGILLAYLL 517

Proton_antipo_M

pfam00361

Proton-conducting membrane transporter; This is a family of membrane transporters that ...

5-170

2.50e-32

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.

Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 121.27 E-value: 2.50e-32

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   5 SSTLVTAGVYLLIRFSPMLDIYSCGW--FLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KL 79
Cdd:pfam00361 121 AATLVKAGGYGLIRRSLLYLPSSPFIqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQA 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWV 159
Cdd:pfam00361 201 AIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASW 280

                         170
                  ....*....|.
gi 1933122726 160 NCLIFFLFFFS 170
Cdd:pfam00361 281 IFLVLAGVVGS 291

Name

Accession

Description

Interval

E-value

ND5

MTH00165

NADH dehydrogenase subunit 5; Provisional

1-306

2.61e-127

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214444 [Multi-domain] Cd Length: 573 Bit Score: 374.48 E-value: 2.61e-127

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLA 80
Cdd:MTH00165  215 ALVHSSTLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLA 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  81 FFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWVN 160
Cdd:MTH00165  295 FFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLN 374

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 161 CLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIALPYYL 240
Cdd:MTH00165  375 FFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYL 454

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1933122726 241 KFLTIIVVIMGSYLGYFISNFGFSYNLFSLSMLPYVSFVGSMWFMPFLSTNFISYLPLKMGYYSSK 306
Cdd:MTH00165  455 KLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLK 520

ND5

MTH00151

NADH dehydrogenase subunit 5; Provisional

1-301

7.05e-87

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214436 [Multi-domain] Cd Length: 565 Bit Score: 270.56 E-value: 7.05e-87

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLD-IYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:MTH00151  211 ALVHSSTLVTAGVFLLIRFFPFLSsSSGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSL 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWV 159
Cdd:MTH00151  291 ALFHLYTHALFKALLFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPT 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 160 NCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIALPYY 239
Cdd:MTH00151  371 SLLMVLLMFVGVGLTALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSY 450

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122726 240 LKFLTIIVVIMGSYLGYFISNFGFsynlFSLSMLPYVSFVGSMWFMPFLSTNFISYLPLKMG 301
Cdd:MTH00151  451 LKLLIGFVILLGLFLSFGFWDSGF----SSSKMVKLSFFFSSMWFLSPLSSQPLKSLSLKLS 508

ND5

MTH00207

NADH dehydrogenase subunit 5; Provisional

1-306

1.02e-85

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 164753 [Multi-domain] Cd Length: 572 Bit Score: 267.79 E-value: 1.02e-85

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDiySCGWF---LLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP 77
Cdd:MTH00207  214 ALVHSSTLVTAGVFLLIRFYPFLS--STYWFnpaLLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMP 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  78 KLAFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLS 157
Cdd:MTH00207  292 KLALFHLITHALFKALLFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFY 371

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 158 WVNCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIALP 237
Cdd:MTH00207  372 PHNSLMILMIFLATALTAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILP 451

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933122726 238 YYLKFLTIIVVIMGSYLGYFISNFGFSYNLFSLSMLPYVSFVGSMWFMPFLSTNFISYLPLKMGYYSSK 306
Cdd:MTH00207  452 LQYKLLPLLVVTLGALLAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLK 520

ND5

MTH00209

NADH dehydrogenase subunit 5; Provisional

1-299

1.57e-84

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 177252 [Multi-domain] Cd Length: 564 Bit Score: 264.59 E-value: 1.57e-84

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPML-DIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:MTH00209  210 ALVHSSTLVTAGVYLLIRFFPSLfSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPEL 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWV 159
Cdd:MTH00209  290 AFFHLITHALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNM 369

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 160 NCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIALPYY 239
Cdd:MTH00209  370 PIMTLILMFLSTSLTAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWF 449

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 240 LKFLTIIVVIMGSYLGYFISNfgfsYNLFSLSMLPYVSFVGSMWFMPFLSTNFISYLPLK 299
Cdd:MTH00209  450 LKLLPIMLILFGVLLMYMVLK----KNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMK 505

ND5

MTH00211

NADH dehydrogenase subunit 5; Provisional

1-305

7.43e-67

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214459 [Multi-domain] Cd Length: 597 Bit Score: 219.44 E-value: 7.43e-67

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPM-LDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:MTH00211  239 ALLHSSTMVVAGVFLLIRLSPLfQNNQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQL 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWV 159
Cdd:MTH00211  319 AFLHICTHAFFKAMLFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYL 398

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 160 NCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMI-ALPY 238
Cdd:MTH00211  399 NAWALLLTLLATSLTAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEIlSLPF 478

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933122726 239 YLKFLTIIVVIMGSYLGYFISNFgfsynLFSLSMLPYVSFVGSMWFMPFLSTNFISYLPLKMGYYSS 305
Cdd:MTH00211  479 LLKLMPLLVTIVGLLLGLELVNL-----THKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGQTLS 540

ND5

MTH00004

NADH dehydrogenase subunit 5; Validated

1-260

2.23e-63

NADH dehydrogenase subunit 5; Validated

Pssm-ID: 214398 [Multi-domain] Cd Length: 602 Bit Score: 210.02 E-value: 2.23e-63

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYS-----CgwflLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG 75
Cdd:MTH00004  244 ALLHSSTMVVAGIFLLIRTHPLLQNNQtaltiC----LCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLN 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  76 YPKLAFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVC 155
Cdd:MTH00004  320 QPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLN 399

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 156 LSWVNCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPI-PHMI 234
Cdd:MTH00004  400 TSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPM 479

                         250       260
                  ....*....|....*....|....*.
gi 1933122726 235 ALPYYLKFLTIIVVIMGSYLGYFISN 260
Cdd:MTH00004  480 TMPTTTKLAALIVTILGILLALELSN 505

ND5

MTH00208

NADH dehydrogenase subunit 5; Provisional

1-296

7.94e-61

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 177251 [Multi-domain] Cd Length: 628 Bit Score: 204.05 E-value: 7.94e-61

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYScgWFL---LLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP 77
Cdd:MTH00208  271 ALLHSSTMVVAGVFLLIRTSPLISNSP--WFLslcLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQP 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  78 KLAFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLS 157
Cdd:MTH00208  349 NLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLAS 428

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 158 WVNCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIaLP 237
Cdd:MTH00208  429 ISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLPPLT-LP 507

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1933122726 238 YYLKFLTIIVVIMGSYLGYFISNFgFSYNLFSLSmlpYVSFVGSMWFMPFLSTNFISYL 296
Cdd:MTH00208  508 LILKSLPLIVTIIGAAFSFSFLLS-LSSNPINSN---FFSFLSNQWFFVNISHSIIISF 562

ND5

MTH00108

NADH dehydrogenase subunit 5; Provisional

1-305

3.47e-59

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 177170 [Multi-domain] Cd Length: 602 Bit Score: 198.92 E-value: 3.47e-59

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYSCGWFLLL-IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:MTH00108  245 ALLHSSTMVVAGVFLLIRFHPLMENNKTIQTLTLcLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHL 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWV 159
Cdd:MTH00108  325 AFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYT 404

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 160 NCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFP--IPHMiALP 237
Cdd:MTH00108  405 NAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMP 483

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122726 238 YYLKFLTIIVVIMGSYLGYFISNfgFSYNLFSLSMLPYVSFVGSMWFMPFLSTNFISYLPLKMGYYSS 305
Cdd:MTH00108  484 LYLKLTALAVTILGFILALELNL--LTNNLKFKYPSNTFKFSNMLGYFPTIMHRLPPYMNLTMSQKLA 549

ND5

MTH00066

NADH dehydrogenase subunit 5; Provisional

1-261

3.98e-57

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214416 [Multi-domain] Cd Length: 598 Bit Score: 193.59 E-value: 3.98e-57

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLD-----IYSCgwflLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG 75
Cdd:MTH00066  242 ALLHSSTMVVAGIFLLIRFHPLLEnnqtaLTIC----LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLN 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  76 YPKLAFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVC 155
Cdd:MTH00066  318 QPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMN 397

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 156 LSWVNCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIA 235
Cdd:MTH00066  398 TSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQIL 477

                         250       260
                  ....*....|....*....|....*..
gi 1933122726 236 -LPYYLKFLTIIVVIMGSYLGYFISNF 261
Cdd:MTH00066  478 tMPTFMKLAALLVTLLGLLIALDLAKI 504

NuoL

COG1009

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...

1-258

4.76e-54

Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 185.36 E-value: 4.76e-54

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYSC-GWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:COG1009   246 ALLHAATMVKAGVYLLARLSPLFALSPVwLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILE-MVCLSW 158
Cdd:COG1009   326 ALFHLLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGG 404

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 159 VNCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWL---------IFP 229
Cdd:COG1009   405 LGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLG 484

                         250       260
                  ....*....|....*....|....*....
gi 1933122726 230 IPHMIALPYYLKFLTIIVVIMGSYLGYFI 258
Cdd:COG1009   485 GELHLAHGLLLNALPLLLSLLGIALGYLL 513

ND5

MTH00137

NADH dehydrogenase subunit 5; Provisional

1-186

5.80e-53

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214428 [Multi-domain] Cd Length: 611 Bit Score: 182.72 E-value: 5.80e-53

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLD-----IYSCgwflLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG 75
Cdd:MTH00137  250 ALLHSSTMVVAGIFLLIRLSPLMEnnqtaLTTC----LCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLN 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  76 YPKLAFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVC 155
Cdd:MTH00137  326 QPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALN 405

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1933122726 156 LSWVNCLIFFLFFFSTGLTASYSFRL-FYYSM 186
Cdd:MTH00137  406 TSHLNAWALTLTLIATSFTAVYSLRVvFFVSM 437

ND5

MTH00020

NADH dehydrogenase subunit 5; Reviewed

1-302

3.03e-46

NADH dehydrogenase subunit 5; Reviewed

Pssm-ID: 214400 [Multi-domain] Cd Length: 610 Bit Score: 164.48 E-value: 3.03e-46

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYSCGWFLL-LIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:MTH00020  245 ALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSI 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWV 159
Cdd:MTH00020  325 SLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYY 404

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 160 NCLIFFLFFFSTGLTASYSFRLFYYS-MSGDNNFYPSFSFDDKG-YYISFGMIALLFVAVFGGSFLSWLIF--------P 229
Cdd:MTH00020  405 LIFAYWLGCFSALLTAFYSIRLIYLTfLSNTNLKKAVFFHLHEGdWNLLLPLGILALGSIFVGYLAKEMIWsfqitlppI 484

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1933122726 230 IPHMIAL-PYYLKFLTIIVVImgsyLGYFISNFGFSYNLFSLSMLPYvSFVGSMWFMPFLSTNFISYLPLKMGY 302
Cdd:MTH00020  485 VPLSIKLlPVFLSLGGIGLVI----ILYFYSSKTFRVPFSFIGRNSY-TFLGSAWQFNYILNYFLIKKIWKGGH 553

NDH_I_L

TIGR01974

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...

1-258

2.11e-45

Pssm-ID: 273905 [Multi-domain] Cd Length: 609 Bit Score: 162.07 E-value: 2.11e-45

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYS-CGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:TIGR01974 248 ALIHAATMVTAGVYLVARTSPLFELSPtALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAA 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWV 159
Cdd:TIGR01974 328 AIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGT 407

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 160 NCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPI--------- 230
Cdd:TIGR01974 408 HSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsae 487

                         250       260       270
                  ....*....|....*....|....*....|
gi 1933122726 231 --PHMIALPYYLKFLTIIVVIMGSYLGYFI 258
Cdd:TIGR01974 488 paLEHHHVPALEIWSPTAVAILGILLAYLL 517

PRK06590

NADH:ubiquinone oxidoreductase subunit L; Reviewed

1-258

3.54e-45

NADH:ubiquinone oxidoreductase subunit L; Reviewed

Pssm-ID: 235836 [Multi-domain] Cd Length: 624 Bit Score: 161.86 E-value: 3.54e-45

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLD-IYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:PRK06590  252 ALIHAATMVTAGVYLVARMSPLFElSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAA 331

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEmVCLSWV 159
Cdd:PRK06590  332 AIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANG 410

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 160 NCLIFFLFFFSTGLTASYSFRLFYYSMSG---DNNFYPSfsfdDKGYYISFGMIALLFVAVFGG-----SFLSWLIFP-- 229
Cdd:PRK06590  411 HINLFVAGLVGAFLTAFYSFRLIFLVFHGkekEKIHHPH----ESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTte 486

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1933122726 230 ---IPHMIALPYYLKFLTIIVVIMGSYLGYFI 258
Cdd:PRK06590  487 lahGEAEHHLPVWVALLPLVVALAGIALAWLL 518

ND5

MTH00210

NADH dehydrogenase subunit 5; Provisional

1-303

8.26e-45

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 177253 [Multi-domain] Cd Length: 616 Bit Score: 160.56 E-value: 8.26e-45

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYSCGWFLL-LIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:MTH00210  246 ALIHAATMVTAGVFLIIRSGPLFEGSPLALTIVtILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYST 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWV 159
Cdd:MTH00210  326 SLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYY 405

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 160 NCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPS--FSFDDKGYYISFGMIALLFVAVFGGS-----FLSWLIFPIph 232
Cdd:MTH00210  406 IAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSKKEvfIGVHESSWNITFPLLLLAFGSIFVGYlgkevVLSNVIPPI-- 483

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933122726 233 miaLPYYLKFLTIIVVIMGSYLGYFISN------FGFSYNLFSLSMLPYVSFVGSMWFMPFLSTNFISYLPLKMGYY 303
Cdd:MTH00210  484 ---VPNSIKMIPLLFSLLGALLAFVIYNsmvfliKISRRGVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHL 557

PRK07376

NADH-quinone oxidoreductase subunit L;

1-189

1.41e-38

NADH-quinone oxidoreductase subunit L;

Pssm-ID: 236005 [Multi-domain] Cd Length: 673 Bit Score: 144.01 E-value: 1.41e-38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLD-IYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:PRK07376  262 ALIHAATMVAAGVFLVARMYPVFEqFPAVMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSA 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLKD--------SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLIL 151
Cdd:PRK07376  342 GLFHLMTHAYFKAMLFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEIL 421

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1933122726 152 EMVCLSwvNCLIFFLFFFSTGLTASYSFRLFYYSMSGD 189
Cdd:PRK07376  422 GAAFEA--NPALWFVGFLTAGMTAFYMFRMYFLTFEGE 457

Proton_antipo_M

pfam00361

Proton-conducting membrane transporter; This is a family of membrane transporters that ...

5-170

2.50e-32

Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 121.27 E-value: 2.50e-32

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   5 SSTLVTAGVYLLIRFSPMLDIYSCGW--FLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KL 79
Cdd:pfam00361 121 AATLVKAGGYGLIRRSLLYLPSSPFIqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQA 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWV 159
Cdd:pfam00361 201 AIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASW 280

                         170
                  ....*....|.
gi 1933122726 160 NCLIFFLFFFS 170
Cdd:pfam00361 281 IFLVLAGVVGS 291

ndhF

CHL00025

NADH dehydrogenase subunit 5

1-207

3.48e-30

NADH dehydrogenase subunit 5

Pssm-ID: 214338 [Multi-domain] Cd Length: 741 Bit Score: 120.00 E-value: 3.48e-30

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLD-IYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:CHL00025  262 ALIHAATMVAAGIFLVARLLPLFIvIPYIMNLISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRA 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHLLAHALFKALLFMCAGSMIHNL--------KDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLIL 151
Cdd:CHL00025  342 ALFHLITHAYSKALLFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEIL 421

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 152 EMvclSWVNCLIFFLFFFST-GLTASYSFRLFYYSMSGD---NNFYPSFSFDDKGYYISF 207
Cdd:CHL00025  422 ND---SWLYSPIFAIIAWSTaGLTAFYMFRIYLLTFEGHlrvHFQNYSGKKNSSFYSISL 478

ND5

MTH00032

NADH dehydrogenase subunit 5; Provisional

1-153

1.56e-29

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214407 [Multi-domain] Cd Length: 669 Bit Score: 118.14 E-value: 1.56e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYSCGWFLLLI-GCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM-GYPK 78
Cdd:MTH00032  260 ALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITIfGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHN 339

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1933122726  79 LAFFHLLAHALFKALLFMCAGSMIHNLK-DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEM 153
Cdd:MTH00032  340 VGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415

PRK12650

DUF4040 family protein;

1-152

1.93e-27

DUF4040 family protein;

Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 112.44 E-value: 1.93e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPML-DIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP-- 77
Cdd:PRK12650  243 AFLHAAAVVKAGIYLLLRFSPVFhDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPfa 322

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1933122726  78 -KLAFFHLLAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILE 152
Cdd:PRK12650  323 lTAAVVHTLAHALFKSSLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397

NADH5_C

pfam06455

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...

177-306

3.59e-27

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.

Pssm-ID: 368917 [Multi-domain] Cd Length: 181 Bit Score: 104.55 E-value: 3.59e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 177 YSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIFPIPHMIALPYYLKFLTIIVVIMGSYLGY 256
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1933122726 257 FISNFGFSYNLFSLSMlPYVSFVGSMWFMPFLSTNFISYLPLKMGYYSSK 306
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAK 129

ND5

MTH00095

NADH dehydrogenase subunit 5; Provisional

1-303

4.65e-27

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 177158 [Multi-domain] Cd Length: 527 Bit Score: 110.39 E-value: 4.65e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLA 80
Cdd:MTH00095  199 SLVHSSTLVTAGLILLMNFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVS 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  81 FFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWVN 160
Cdd:MTH00095  279 FIHLLSHALFKSCLFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYM 358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 161 CLIFFLFFFSTGLTASYSFRLFYysmsgdnNFYPSFSFDDKGYYISFGMIALLFVAVFGG-SFLSWLIFPIPHMIALPYY 239
Cdd:MTH00095  359 IFFSLMFFFSVFLTFGYSYRLWK-------SFFLSFSKVVNVYSSSVLMNFLSLMLVFFSvFFLWWLNFNLLNLPSLFLY 431

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1933122726 240 LKFLTIIVVIMgsyLGYFISNFGFSYNLFSLSMLPYVSFVGSMWFMPFLSTNFISYLPLKMGYY 303
Cdd:MTH00095  432 LDFYVPLFYLF---MIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYK 492

HyfB

COG0651

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...

5-184

9.14e-26

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];

Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 106.00 E-value: 9.14e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   5 SSTLVTAGVYLLIRFS----PMLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL- 79
Cdd:COG0651   244 SGLLTKVGVYAILRVLtllfGADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGl 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 --AFFHLLAHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVcLS 157
Cdd:COG0651   324 agALFHLLNHALAKALLFLAAGAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LE 401

                         170       180
                  ....*....|....*....|....*..
gi 1933122726 158 WVNCLIFFLFFFSTGLTASYSFRLFYY 184
Cdd:COG0651   402 AGAWLLAAVLLLSSLLTLAYFVRIFGR 428

PRK12647

putative monovalent cation/H+ antiporter subunit A; Reviewed

1-152

4.62e-25

putative monovalent cation/H+ antiporter subunit A; Reviewed

Pssm-ID: 237156 [Multi-domain] Cd Length: 761 Bit Score: 105.00 E-value: 4.62e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPML-DIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP-- 77
Cdd:PRK12647  230 AYLHSATMVKAGIYLLARLNPVLgGTPLWQTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSEla 309

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1933122726  78 -KLAFFHLLAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILE 152
Cdd:PRK12647  310 iKAAVLFLVAHSLYKGALFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384

PRK12644

putative monovalent cation/H+ antiporter subunit A; Reviewed

1-183

7.16e-23

putative monovalent cation/H+ antiporter subunit A; Reviewed

Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 98.84 E-value: 7.16e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPML-DIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:PRK12644  238 AYLHAAAMVKAGIYLVARLAPGFaDVPVWRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDA 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 AFFHL---LAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMV-- 154
Cdd:PRK12644  318 ALAGLamlLAHALFKAALFLVVGIIDHS-TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlh 396

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1933122726 155 --CLSWVNCLIFFLFFFSTGLTASYSFRLFY 183
Cdd:PRK12644  397 dgALGPAGPVVLAGIVLGSILTVAYSLRFLW 427

PRK12648

putative monovalent cation/H+ antiporter subunit A; Reviewed

1-180

1.03e-22

putative monovalent cation/H+ antiporter subunit A; Reviewed

Pssm-ID: 237157 [Multi-domain] Cd Length: 948 Bit Score: 98.34 E-value: 1.03e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDiyscG---WFLL--LIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG 75
Cdd:PRK12648  242 AYLHSATMVKAGVFLLARLWPVLA----GteeWFWIvgGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLG 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  76 YPK---LAFFHLLAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDL--- 149
Cdd:PRK12648  318 SPLaavAAIFHIINHATFKASLFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffa 396

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1933122726 150 -ILEMVCLSWVNCLIFFLFFFSTGLTASYSFR 180
Cdd:PRK12648  397 eTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428

PRK08375

putative monovalent cation/H+ antiporter subunit D; Reviewed

1-184

1.50e-22

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 97.26 E-value: 1.50e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFS------PMLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG---LMMSI 71
Cdd:PRK08375  237 TALLSGLVTKVAVYALIRIYftvfggDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLAL 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  72 LSMGYPKLAFFHLLAHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSK-DLI 150
Cdd:PRK08375  317 LTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLV 395

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1933122726 151 LEMVCLSWVNCLIFFLffFSTGLTASYSFRLFYY 184
Cdd:PRK08375  396 VGAVEAGQWLVLAVLL--ASSLLALLYFLRIWYR 427

PRK12645

monovalent cation/H+ antiporter subunit A; Reviewed

1-154

4.52e-22

monovalent cation/H+ antiporter subunit A; Reviewed

Pssm-ID: 237155 [Multi-domain] Cd Length: 800 Bit Score: 96.53 E-value: 4.52e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIySCGWFLL--LIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPK 78
Cdd:PRK12645  245 AYLHSATMVKAGIYLVARFTPIFAG-SQVWFWTvtLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAAS 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  79 L----------------AFFHLLAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLA 142
Cdd:PRK12645  324 LhyqgddskiyaaaitaAIFHLINHATFKGSLFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFN 402

                         170
                  ....*....|..
gi 1933122726 143 GFYSKDLILEMV 154
Cdd:PRK12645  403 GFLSKEMFFESM 414

PRK12646

DUF4040 family protein;

1-152

1.82e-21

DUF4040 family protein;

Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 94.44 E-value: 1.82e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIYSC-GWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG---- 75
Cdd:PRK12646  245 AYLHSATMVKAGIFLLFRFTPLLGLSNMyIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggya 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  76 ----------YPKLAF---FHLLAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLA 142
Cdd:PRK12646  325 qhqqdaiasiYVFVLFaalFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLN 403

                         170
                  ....*....|
gi 1933122726 143 GFYSKDLILE 152
Cdd:PRK12646  404 GFLSKEMFLD 413

PRK12649

putative monovalent cation/H+ antiporter subunit A; Reviewed

1-152

1.06e-19

putative monovalent cation/H+ antiporter subunit A; Reviewed

Pssm-ID: 183649 [Multi-domain] Cd Length: 789 Bit Score: 89.50 E-value: 1.06e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDiYSCGWFLLL--IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIL---SMG 75
Cdd:PRK12649  249 AFLHSATMVKAGVYLVARIHPIFS-GTEAWFILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYgytTYH 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  76 YPKLAF----FHLLAHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLIL 151
Cdd:PRK12649  328 EPGLGVaaatFHLLNHATFKACLFLVAGIVAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFY 406


                  .
gi 1933122726 152 E 152
Cdd:PRK12649  407 E 407

PRK07390

NAD(P)H-quinone oxidoreductase subunit F; Validated

6-175

6.05e-18

NAD(P)H-quinone oxidoreductase subunit F; Validated

Pssm-ID: 236008 [Multi-domain] Cd Length: 613 Bit Score: 83.81 E-value: 6.05e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   6 STLVTAGVYLLIRFSPMLDIYSCGW-FLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHL 84
Cdd:PRK07390  260 SVVVATGAWVLIKLQPVLALSPVALtVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLL 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  85 LAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSkdlILEMVCLSWVNCLIF 164
Cdd:PRK07390  340 LTHAIAKALLFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWL 415

                         170
                  ....*....|..
gi 1933122726 165 F-LFFFSTGLTA 175
Cdd:PRK07390  416 VgVLLLVNALTA 427

PRK12667

putative monovalent cation/H+ antiporter subunit D; Reviewed

5-183

7.87e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 80.40 E-value: 7.87e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   5 SSTLVTAGVYLLIRF-----------SPMLDIYSCgwFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILS 73
Cdd:PRK12667  262 SGLVVNVGAYAIIRFlytifgispslIDFRAALSP--ILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIG 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  74 MGYP---KLAFFHLLAHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLI 150
Cdd:PRK12667  340 IGTQlglAAALFHIINHAIAKSLLFLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLL 418

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1933122726 151 LEMVCLSWVNCLIFFLFFFSTgLTASYSFRLFY 183
Cdd:PRK12667  419 FNALLESGFYLPALVLLIASA-ISLVGYFRAWY 450

PRK08376

putative monovalent cation/H+ antiporter subunit D; Reviewed

11-154

2.20e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 76.29 E-value: 2.20e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  11 AGVYLLIR-----FSPMLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM-----SILSMGYPKL- 79
Cdd:PRK08376  264 AGLYALARvlfsiYGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglgvGLAALGDPAMa 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  80 ---------AFFHLLAHALFKALLFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLI 150
Cdd:PRK08376  344 sygeialagGIYHIVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422


                  ....
gi 1933122726 151 LEMV 154
Cdd:PRK08376  423 YESS 426

ND5

MTH00063

NADH dehydrogenase subunit 5; Provisional

2-270

2.34e-15

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214414 [Multi-domain] Cd Length: 522 Bit Score: 76.07 E-value: 2.34e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   2 LVHSSTLVTAGVYLLIRFSPMLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAF 81
Cdd:MTH00063  193 LVHSSTLVAAGVWFVMRYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSL 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  82 FHLLAHALFKALLFMCAGSMIHNLKDSQDIR-----FMGSIVNFMPLTSVCfnvssLSLCGLPFLAGFYSKDLILEMVCL 156
Cdd:MTH00063  273 FQLVSHGVSKCLLFMLVGDVMSGSGGSQSSNcvyssILYGSWNLFYLFLLV-----LGLSGVPFIGVFFSKHFLLSSFSS 347

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 157 SWVNCLIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFddkGYYISFGMiallfvaVFGGSFLSWLIFPI-PHMIA 235
Cdd:MTH00063  348 VVFNVSLLLVVILCVFLSYLYSFRLCLILFGVKSSLSSGVRF---LFFNSGLM-------VFLWLFINYYVFLLlDEVVY 417

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1933122726 236 LPYYLKFLTIIVVIMGSYLGY-FISNFGFSYNLFSL 270
Cdd:MTH00063  418 LGVFISLVLLLVQLLGLLVGVlFYDSNLFSNWSSSL 453

PRK08377

NADH dehydrogenase subunit N; Validated

5-181

2.52e-15

NADH dehydrogenase subunit N; Validated

Pssm-ID: 181406 [Multi-domain] Cd Length: 494 Bit Score: 75.96 E-value: 2.52e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   5 SSTLVTAGVYLLIR----FSPMLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP--- 77
Cdd:PRK08377  245 SAFVVKAGLYAMARilylMQNANGWSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQagv 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  78 KLAFFHLLAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILeMVCLS 157
Cdd:PRK08377  325 DAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLS 402

                         170       180
                  ....*....|....*....|....
gi 1933122726 158 WVNCLIFFLFFFSTGLTASYSFRL 181
Cdd:PRK08377  403 AGYTWPVALVLGASVVEAVYYFRL 426

PRK07234

putative monovalent cation/H+ antiporter subunit D; Reviewed

1-152

2.23e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 73.06 E-value: 2.23e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSpmLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSilsmgYPKLA 80
Cdd:PRK07234  219 SALLSGVVVKAGVFPLVRCA--LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILA-----APLVG 291

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122726  81 FFHLLAHALFKALLFMCAGSmIHNLKDSQDIRFMGSIVNFMPLTsvcfnVSSLSLCGLPFLAGFYSKDLILE 152
Cdd:PRK07234  292 GLYALAHGLVKSTLFLCAGA-LPSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357

PRK06521

hydrogenase 4 subunit B; Validated

5-157

2.79e-13

hydrogenase 4 subunit B; Validated

Pssm-ID: 235820 [Multi-domain] Cd Length: 667 Bit Score: 69.92 E-value: 2.79e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   5 SSTLVTAGVYLLIRFSPML---DIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALST-------LSQLGLMMSILSM 74
Cdd:PRK06521  249 SGVMLKVAIYGILRVVFDLlgaPGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYSTienigiiFVGLGLAMVFIAY 328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  75 GYPKLA-------FFHLLAHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSK 147
Cdd:PRK06521  329 GMPLLAalaltaaLYHLLNHALFKSLLFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSE 407

                         170
                  ....*....|
gi 1933122726 148 DLILEMVCLS 157
Cdd:PRK06521  408 WLLLQSLLSS 417

PRK06589

putative monovalent cation/H+ antiporter subunit D; Reviewed

1-217

3.54e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 69.46 E-value: 3.54e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIR-------FSPMLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILS 73
Cdd:PRK06589  245 ALLHAVIVVKTGLFCIYKillyifgLSYLQRIFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAF 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  74 MGYPK---LAFFHLLAHALFKALLFMCAGSmIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLI 150
Cdd:PRK06589  325 ILTPKalgAAILHLVSHSFAKICLFYSMGS-IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLI 403

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 151 LEMVCLS---WVNCLIFFLFFFSTGLTASYSFRLFYysmsgdNNFYPSFsfdDKGYYISFGMIALLFVAV 217
Cdd:PRK06589  404 LLAASEQnqpWLSIIVMLVVIASSILSALYLLKILS------SIYKPSL---SENSFITKSLPYLMQISV 464

PRK08667

hydrogenase membrane subunit; Validated

5-152

5.13e-13

hydrogenase membrane subunit; Validated

Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 69.37 E-value: 5.13e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   5 SSTLVTAGVYLLIRFspMLDIYS----CGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM------ 74
Cdd:PRK08667  244 SGVMLKVAVYGLVRF--LMDVLSpelwWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLyvifgv 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  75 -GYPKLAF-------FHLLAHALFKALLFMCAGSMIHNLKDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYS 146
Cdd:PRK08667  322 yGLDTLALlalggalFHSLNHALFKSLLFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFAS 400


                  ....*.
gi 1933122726 147 KDLILE 152
Cdd:PRK08667  401 ELLLYE 406

PRK08668

NADH dehydrogenase subunit M; Validated

9-183

3.07e-12

NADH dehydrogenase subunit M; Validated

Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 66.94 E-value: 3.07e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   9 VTAGVYLLIRFSPMLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHLL 85
Cdd:PRK08668  252 VLPGTKLFSEFGTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSlgfAGGLFHVF 331

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  86 AHALFKALLFMCAGSMIHNLKDSQdIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWVNCLIFF 165
Cdd:PRK08668  332 NHALFKGLFFLIFAAVIYRTGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFM 410

                         170
                  ....*....|....*...
gi 1933122726 166 LFFFSTGLTAsYSFRLFY 183
Cdd:PRK08668  411 AFFGSIGSFL-YVFRPLA 427

PRK06525

hydrogenase 4 subunit D; Validated

1-151

1.31e-11

hydrogenase 4 subunit D; Validated

Pssm-ID: 180606 [Multi-domain] Cd Length: 479 Bit Score: 64.61 E-value: 1.31e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSSTLVTAGVYLLIRFSPMLDIY--SCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGY-- 76
Cdd:PRK06525  242 AYLHAASMVKVGVYIFARAIQSMGPIphVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAIlg 321

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933122726  77 PKLAF----FHLLAHALFKALLFMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLIL 151
Cdd:PRK06525  322 SRLALegsiAYIFNHAFAKSLFFLVAGALSYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399

PRK12668

Na(+)/H(+) antiporter subunit D;

12-151

1.67e-11

Na(+)/H(+) antiporter subunit D;

Pssm-ID: 237168 [Multi-domain] Cd Length: 581 Bit Score: 64.53 E-value: 1.67e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  12 GVYLLIRFSPMLDIyscgwfLLLIGC-MTMFMAGLgANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL---AFFHLLAH 87
Cdd:PRK12668  229 AVYALARAFPGTEL------LIYIGAaMAVYGVFF-ALLENDLRRLLSYHIVSQVGYMVAGIGIGTALAingAVAHAFNH 301

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1933122726  88 ALFKALLFMCAGSMIHNLKDSqDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLIL 151
Cdd:PRK12668  302 ILYKGLLFMSAGAVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364

NuoM

COG1008

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...

3-182

1.74e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase

Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 64.33 E-value: 1.74e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   3 VHSSTLVTAGVYLLIRFS-PMLDIYS--CGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYPK 78
Cdd:COG1008   246 LLAGVLLKMGGYGLLRFAlPLFPEASayFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLG 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  79 L--AFFHLLAHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILemVCL 156
Cdd:COG1008   326 LqgAVLQMVSHGLITAALFLLVGVLYDRTH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGA 402

                         170       180
                  ....*....|....*....|....*.
gi 1933122726 157 SWVNCLIFFLFFFSTGLTASYSFRLF 182
Cdd:COG1008   403 FQVNPWLAILAALGLILTAAYLLWMY 428

PRK08042

formate hydrogenlyase subunit 3; Reviewed

28-144

2.90e-11

formate hydrogenlyase subunit 3; Reviewed

Pssm-ID: 181206 [Multi-domain] Cd Length: 593 Bit Score: 64.08 E-value: 2.90e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  28 CGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLA--------------FFHLLAHALFKAL 93
Cdd:PRK08042  244 WGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSV 323

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1933122726  94 LFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGF 144
Cdd:PRK08042  324 LFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373

PRK08168

NADH-quinone oxidoreductase subunit L;

1-100

7.20e-11

NADH-quinone oxidoreductase subunit L;

Pssm-ID: 236171 [Multi-domain] Cd Length: 516 Bit Score: 62.41 E-value: 7.20e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSStLVTAGVYLLIRFSPMLDI-YSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:PRK08168  235 ALLHAG-VVNLGGFVLIRFAPLLEQaPPARWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYEL 313

                          90       100
                  ....*....|....*....|.
gi 1933122726  80 AFFHLLAHALFKALLFMCAGS 100
Cdd:PRK08168  314 ALLHLVAHSLYKAHAFLSASE 334

PRK07691

putative monovalent cation/H+ antiporter subunit D; Reviewed

8-239

4.39e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 60.35 E-value: 4.39e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   8 LVTAGVYLLIRFSPMLDIYSCGW---FLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL---AF 81
Cdd:PRK07691  251 LTKVGVYAIARTFTLFFSHDTSFthyLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGmigAI 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  82 FHLLAHALFKALLFMCAGSMIHnLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEmVCLSWVNC 161
Cdd:PRK07691  331 YYLIHDMIVKAALFLLIGIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE-GTFEAGFY 408

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122726 162 LIFFLFFFSTGLTASYSFRLFYYSMSGDNNFYPSFSFDDKGYYISFGMIALLFVAVFGgsFLSWLIFPIPHMIALPYY 239
Cdd:PRK07691  409 VSGIIVLLSSLLVLYSVIKIFLKGFWGEPKGYDLNNKVPVKKLLLPAVVLVAITILYG--LGAEPLYPYVKQAAETLY 484

PRK05846

NADH:ubiquinone oxidoreductase subunit M; Reviewed

12-189

1.01e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed

Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 55.98 E-value: 1.01e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  12 GVYLLIRFS-PMLDIYS--CGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG-LMMSILSMGYPKL--AFFHLL 85
Cdd:PRK05846  257 GAYGLLRFSlPLFPDASheFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMI 336

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  86 AHALFKALLFMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILemVCLSWVNCLIFF 165
Cdd:PRK05846  337 SHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIAF 413

                         170       180
                  ....*....|....*....|....
gi 1933122726 166 LFFFSTGLTASYSFRLFYYSMSGD 189
Cdd:PRK05846  414 IATTGLILAAVYSLWLYQRVMFGP 437

PRK12663

Na+/H+ antiporter subunit D;

12-151

7.49e-08

Na+/H+ antiporter subunit D;

Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 53.42 E-value: 7.49e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  12 GVYLLIRFSPML-----DIYSCgwFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKL---AFFH 83
Cdd:PRK12663  252 GIYALIRVFTLLfpqerELLHP--LLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFY 329

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122726  84 LLAHALFKALLFMCAGSMIHnLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLIL 151
Cdd:PRK12663  330 LVHDMVVKTALFLIAGSLVR-LTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396

PRK08601

NADH dehydrogenase subunit 5; Validated

1-100

1.12e-06

NADH dehydrogenase subunit 5; Validated

Pssm-ID: 236310 [Multi-domain] Cd Length: 509 Bit Score: 49.65 E-value: 1.12e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   1 ALVHSStLVTAGVYLLIRFSPMLDIYSCGWFLLLIGCMTMFMaGLGANF-EFDLKKIIALSTLSQLGLMMSILSMGYPKL 79
Cdd:PRK08601  239 AIMHAG-LVNAGGIMLTRFSPLFHDDIAQILLLIFASISVLI-GTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSA 316

                          90       100
                  ....*....|....*....|.
gi 1933122726  80 AFFHLLAHALFKALLFMCAGS 100
Cdd:PRK08601  317 AIIHLILHGLFKATLFLQSGS 337

PRK08676

hydrogenase membrane subunit; Validated

3-182

3.07e-06

hydrogenase membrane subunit; Validated

Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 48.21 E-value: 3.07e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   3 VHSSTLVTAGVYLLIRFSPMLDIYSCGW----FLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPK 78
Cdd:PRK08676  243 LLSGTVLNIGIYGILRLSALLRQSGAAEqfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPL 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  79 LAF---FHLLAHALFKALLFMCAGsMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLIL-EMV 154
Cdd:PRK08676  323 ALFwmlFHMLAHSLVKSGLFFSAG-ILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLG 401

                         170       180
                  ....*....|....*....|....*....
gi 1933122726 155 CLS-WVNCLIFFLFFFSTGLTASYSFRLF 182
Cdd:PRK08676  402 GISvWLVLAVLLLLLLAASSFAIFLLKAF 430

PRK12665

putative monovalent cation/H+ antiporter subunit D; Reviewed

8-152

5.63e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 47.66 E-value: 5.63e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   8 LVTAGVYLLIRFSPMLDIYSCGW-FLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPK---LAFFH 83
Cdd:PRK12665  251 LTKVGVYAIIRTHTLLFPGGGLDtLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAglsGAIYY 330

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933122726  84 LLAHALFKALLFMCAGsMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILE 152
Cdd:PRK12665  331 VAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398

PRK06458

hydrogenase 4 subunit F; Validated

52-151

1.19e-05

hydrogenase 4 subunit F; Validated

Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 46.46 E-value: 1.19e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  52 DLKKIIALSTLSQLGLMMSILSMGYPkLAFF----HLLAHALFKALLFMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVC 127
Cdd:PRK06458  304 DIKRLFAYSSIEHMGLIAFALGIGGP-LGIFaallHMLNHSLTKSAIFFASGNVLQK-YGTRDINVIRGLLKVSPLTGWG 381

                          90       100
                  ....*....|....*....|....
gi 1933122726 128 FNVSSLSLCGLPFLAGFYSKDLIL 151
Cdd:PRK06458  382 LMLGALAIAGMPPFGVFISEFLIL 405

PRK06277

energy conserving hydrogenase EhbF;

7-152

1.37e-05

energy conserving hydrogenase EhbF;

Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 46.18 E-value: 1.37e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726   7 TLVTAGVYLLIRFSPMLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFH 83
Cdd:PRK06277  244 VLVALMLVIFKLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPlgiVAGIFH 323

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933122726  84 LLAHALFKALLFMCAGSmIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILE 152
Cdd:PRK06277  324 AINHVIYKSALFLGAGI-VSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391

ND2

MTH00112

NADH dehydrogenase subunit 2; Provisional

32-152

3.41e-05

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 44.81 E-value: 3.41e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  32 LLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGyPKLAFFHLLAHALFKALLFMcagsMIHNLKdSQDI 111
Cdd:MTH00112  154 LLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYS-PKLTLLTFYIYILMTTPMFL----TLNTTS-TKTL 227

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1933122726 112 RFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILE 152
Cdd:MTH00112  228 KDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQ 268

NuoN

COG1007

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...

11-147

9.55e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase

Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 43.57 E-value: 9.55e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  11 AGVYLLIR-FSPMLDIYSCGWFLLL--IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYP---KLAFFHL 84
Cdd:COG1007   248 AAFAALLRlLVEAFPGLAADWQLLLavLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPlgvSAALFYL 327

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122726  85 LAHALFKALLFMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSK 147
Cdd:COG1007   328 LAYLFMNLGAFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390

PRK12664

putative monovalent cation/H+ antiporter subunit D; Reviewed

22-228

1.19e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 237164 [Multi-domain] Cd Length: 527 Bit Score: 43.57 E-value: 1.19e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  22 MLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPK-----LAFFHLLAHALFKALLFM 96
Cdd:PRK12664  194 LLLFFSGEEILLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGSSgvaigILILQIVLSVVYQTLLFM 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  97 CAGSMIHNLKdSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWVNCLIFFLFF--FSTGLT 174
Cdd:PRK12664  274 VADSVINRTR-KFNLNRVGGLFK-MSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLTLVLYKKLFliCSLLLF 351

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1933122726 175 ASYSFRLFYY---SMSGDNNFYPSFSFDDKgyyisFGMIALLFVAVFGGSFLSWLIF 228
Cdd:PRK12664  352 ASVGLKFFWYafiSKSKSKPEAEKVYIGSK-----LSMIILVLICVVLGMFNSYLLF 403

PRK12662

putative monovalent cation/H+ antiporter subunit D; Reviewed

31-147

2.97e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 42.03 E-value: 2.97e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  31 FLLLIGCMTMFmAGLGANFEFDLKKIIALSTLSQLG---LMMSILSMGYPKLAFFHLLAHALFKALLFMCAGSMIHNLkD 107
Cdd:PRK12662  282 FMILAALAIVF-GSVLAILSKDIKRIFAYSSISHIGyiiLAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHF-G 359

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1933122726 108 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGLPFLAGFYSK 147
Cdd:PRK12662  360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399

ND2

MTH00070

NADH dehydrogenase subunit 2; Provisional

15-152

2.51e-03

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 39.13 E-value: 2.51e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  15 LLIRFSPMLDIYscgwFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGyPKLAFFHLLAHALFKALL 94
Cdd:MTH00070  141 LLIQISHLLNSN----LLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFS-PHLTLLNLLIYLIMTSSM 215

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122726  95 FMcagsMIHNLKDSQDIRFMGSIVNFMPLTSVCFnVSSLSLCGLPFLAGFYSKDLILE 152
Cdd:MTH00070  216 FL----MLMNLNSTNINKLSSSWSKNPTLTSMMM-LTLLSLGGLPPTTGFIPKWLILQ 268

ND2

MTH00160

NADH dehydrogenase subunit 2; Provisional

22-228

4.54e-03

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 38.27 E-value: 4.54e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726  22 MLDIYSCGWFLLLIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYPKLAFFHLLAHALFKALLFMCAGSM 101
Cdd:MTH00160  136 LLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFN 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122726 102 IHNLKDSQDIRFMGSIVNFMpltsvcFNVSSLSLCGLPFLAGFYSKDLILEMVCLSWVNCLIFFLFFFSTgLTASYSFRL 181
Cdd:MTH00160  216 IFFLNQLFNSNNKSKKIKFL------LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSL-ITLYFYLRI 288

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1933122726 182 FYYSMSGdNNFYPSFSFDDKGYYISFGMIALLFVAVFGGSFLSWLIF 228
Cdd:MTH00160  289 SYSSLML-NYNKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFL 334

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01