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Conserved domains on  [gi|1933122716|gb|QPD01044|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Eremippus pusillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-89 9.17e-41

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 140.28  E-value: 9.17e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   1 AMGYSKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:MTH00165  287 SLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILE 366


                  ....*....
gi 1933122716  81 MVCLSWINC 89
Cdd:MTH00165  367 MVSMSNLNF 375
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-89 9.17e-41

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 140.28  E-value: 9.17e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   1 AMGYSKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:MTH00165  287 SLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILE 366


                  ....*....
gi 1933122716  81 MVCLSWINC 89
Cdd:MTH00165  367 MVSMSNLNF 375
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 8-80 1.30e-27

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 104.08  E-value: 1.30e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLkDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:COG1009   326 ALFHLLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILE 397
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 8-80 7.69e-25

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 96.20  E-value: 7.69e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:TIGR01974 328 AIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILE 400
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 6-82 1.95e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 79.28  E-value: 1.95e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933122716   6 KLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 82
Cdd:pfam00361 199 QAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAA 275
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-89 9.17e-41

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 140.28  E-value: 9.17e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   1 AMGYSKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:MTH00165  287 SLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILE 366


                  ....*....
gi 1933122716  81 MVCLSWINC 89
Cdd:MTH00165  367 MVSMSNLNF 375
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 2-88 2.23e-33

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 119.95  E-value: 2.23e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   2 MGYSKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEM 81
Cdd:MTH00151  285 LGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILES 364


                  ....*..
gi 1933122716  82 VCLSWIN 88
Cdd:MTH00151  365 SLMSPTS 371
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 6-88 1.36e-32

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 117.96  E-value: 1.36e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   6 KLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLS 85
Cdd:MTH00004  322 QLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTS 401


                  ...
gi 1933122716  86 WIN 88
Cdd:MTH00004  402 YLN 404
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-80 1.42e-30

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 112.17  E-value: 1.42e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   1 AMGYSKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:MTH00207  287 GLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 7-88 1.58e-30

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 112.25  E-value: 1.58e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   7 LAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLSW 86
Cdd:MTH00108  324 LAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSY 403


                  ..
gi 1933122716  87 IN 88
Cdd:MTH00108  404 TN 405
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 7-88 4.16e-30

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 111.08  E-value: 4.16e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   7 LAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLSW 86
Cdd:MTH00137  329 LAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSH 408


                  ..
gi 1933122716  87 IN 88
Cdd:MTH00137  409 LN 410
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-88 8.77e-30

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 110.12  E-value: 8.77e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   1 AMGYSKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:MTH00209  283 GLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILE 362


                  ....*...
gi 1933122716  81 MVCLSWIN 88
Cdd:MTH00209  363 SMLESNMP 370
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 7-88 7.85e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 107.36  E-value: 7.85e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   7 LAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLSW 86
Cdd:MTH00208  350 LALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASI 429


                  ..
gi 1933122716  87 IN 88
Cdd:MTH00208  430 SN 431
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 7-89 1.97e-28

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 106.15  E-value: 1.97e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   7 LAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLSW 86
Cdd:MTH00066  321 LAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSN 400


                  ...
gi 1933122716  87 INC 89
Cdd:MTH00066  401 LNS 403
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 2-88 7.27e-28

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 104.65  E-value: 7.27e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   2 MGYSKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEM 81
Cdd:MTH00211  313 LNQPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILES 392


                  ....*..
gi 1933122716  82 VCLSWIN 88
Cdd:MTH00211  393 MNGSYLN 399
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 8-80 1.30e-27

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 104.08  E-value: 1.30e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLkDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:COG1009   326 ALFHLLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILE 397
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 3-80 1.31e-27

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 104.08  E-value: 1.31e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122716   3 GYSkLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:PRK06590  328 AYA-AAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE 404
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 7-81 5.50e-26

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 99.38  E-value: 5.50e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933122716   7 LAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEM 81
Cdd:MTH00020  324 ISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILEL 398
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 8-82 3.85e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 97.00  E-value: 3.85e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 82
Cdd:MTH00210  326 SLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELT 400
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 8-80 7.69e-25

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 96.20  E-value: 7.69e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:TIGR01974 328 AIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILE 400
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-79 5.09e-23

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 90.85  E-value: 5.09e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   1 AMG---YSKlAFFHLLSHALFKALLFMCAGSMIHNLKDT--------QDIRFMGSIINFMPLTSICFNVSSLSLCGIPFL 69
Cdd:PRK07376  333 AMGcgaYSA-GLFHLMTHAYFKAMLFLGSGSVIHGMEEVvghdpvlaQDMRLMGGLRKYMPITAITFLIGCLAISGIPPF 411

                          90
                  ....*....|
gi 1933122716  70 AGFYSKDLIL 79
Cdd:PRK07376  412 AGFWSKDEIL 421
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 3-81 1.53e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 81.16  E-value: 1.53e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   3 GYSKLAFFHLLSHALFKALLFMCAGSMIHNLK-DTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEM 81
Cdd:MTH00032  336 GSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 6-82 1.95e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 79.28  E-value: 1.95e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933122716   6 KLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 82
Cdd:pfam00361 199 QAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAA 275
ndhF CHL00025
NADH dehydrogenase subunit 5
 2-79 1.87e-17

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 75.31  E-value: 1.87e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   2 MGYSKLAFFHLLSHALFKALLFMCAGSMIHNL--------KDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFY 73
Cdd:CHL00025  336 IGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFW 415


                  ....*.
gi 1933122716  74 SKDLIL 79
Cdd:CHL00025  416 SKDEIL 421
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 8-80 3.01e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 74.41  E-value: 3.01e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:COG0651   326 ALFHLLNHALAKALLFLAAGAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 8-85 4.15e-14

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 65.68  E-value: 4.15e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLS 85
Cdd:PRK06521  341 ALYHLLNHALFKSLLFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-74 1.50e-13

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 64.16  E-value: 1.50e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1933122716   1 AMGYSKLAFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYS 74
Cdd:PRK07390  328 GLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA 400
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-80 1.73e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 63.84  E-value: 1.73e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:PRK12667  349 ALFHIINHAIAKSLLFLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFN 420
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 8-80 2.63e-13

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 63.21  E-value: 2.63e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLkDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:PRK08667  335 ALFHSLNHALFKSLLFLTAGSVVHAT-GTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK12650 PRK12650
DUF4040 family protein;
8-80 2.61e-12

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 60.44  E-value: 2.61e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:PRK12650  326 AVVHTLAHALFKSSLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
8-79 3.13e-12

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 60.29  E-value: 3.13e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 79
Cdd:PRK12668  294 AVAHAFNHILYKGLLFMSAGAVLYRTG-TEKLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK12646 PRK12646
DUF4040 family protein;
8-80 3.30e-12

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 60.15  E-value: 3.30e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:PRK12646  342 ALFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 8-80 4.68e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 59.82  E-value: 4.68e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:PRK12648  325 AIFHIINHATFKASLFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMFFA 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-82 7.82e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.96  E-value: 7.82e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLkDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 82
Cdd:PRK08376  353 GIYHIVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESS 426
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 8-80 1.00e-11

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 59.07  E-value: 1.00e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:PRK12649  336 ATFHLLNHATFKACLFLVAGIVAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 8-82 1.38e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 58.47  E-value: 1.38e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKDTQdIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 82
Cdd:PRK08668  326 GLFHVFNHALFKGLFFLIFAAVIYRTGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL 399
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-80 3.72e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 57.20  E-value: 3.72e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:PRK08375  325 GLLHLLHHALMKGALFLAAGAIEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVV 396
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 6-80 7.24e-11

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 56.47  E-value: 7.24e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933122716   6 KLAFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:PRK12647  311 KAAVLFLVAHSLYKGALFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 8-79 1.86e-10

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 55.16  E-value: 1.86e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINfMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 79
Cdd:PRK08377  327 GVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII 397
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 8-82 3.03e-10

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 54.55  E-value: 3.03e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 82
Cdd:PRK12645  341 AIFHLINHATFKGSLFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFESM 414
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-80 1.17e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 53.03  E-value: 1.17e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHnLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:PRK07691  329 AIYYLIHDMIVKAALFLLIGIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-85 1.53e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 52.51  E-value: 1.53e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSmIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLS 85
Cdd:PRK06589  334 AILHLVSHSFAKICLFYSMGS-IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQ 410
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 12-82 2.52e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.85  E-value: 2.52e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1933122716  12 LLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 82
Cdd:PRK12644  325 LLAHALFKAALFLVVGIIDHS-TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAV 394
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-80 4.82e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 51.11  E-value: 4.82e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1933122716  10 FHLLSHALFKALLFMCAGSmIHNLKDTQDIRFMGSIINFMPLTsicfnVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:PRK07234  293 LYALAHGLVKSTLFLCAGA-LPSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 8-79 3.19e-08

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 48.82  E-value: 3.19e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLkDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 79
Cdd:PRK06525  329 SIAYIFNHAFAKSLFFLVAGALSYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 2-81 1.06e-07

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 47.22  E-value: 1.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122716   2 MGYSKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEM 81
Cdd:MTH00095  272 SGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILEL 351
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 8-79 1.64e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 46.73  E-value: 1.64e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 79
Cdd:PRK05846  331 AIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 10-72 6.65e-07

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 45.20  E-value: 6.65e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716  10 FHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGF 72
Cdd:PRK08042  312 YHLLNHSLFKSVLFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-79 1.15e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 41.45  E-value: 1.15e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 79
Cdd:PRK06458  335 ALLHMLNHSLTKSAIFFASGNVLQK-YGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
8-80 8.91e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.24  E-value: 8.91e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSmIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:PRK06277  320 GIFHAINHVIYKSALFLGAGI-VSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-75 2.46e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 37.79  E-value: 2.46e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLkDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSK 75
Cdd:PRK12662  333 AVAYIVNHSIVKSALFMVSGSISYHF-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-80 3.47e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 37.26  E-value: 3.47e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGsMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 80
Cdd:PRK12665  327 AIYYVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
8-79 9.60e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 36.08  E-value: 9.60e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHnLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 79
Cdd:PRK12663  326 AIFYLVHDMVVKTALFLIAGSLVR-LTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-75 1.05e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 35.86  E-value: 1.05e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSK 75
Cdd:COG1007   323 ALFYLLAYLFMNLGAFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 8-74 5.49e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 33.85  E-value: 5.49e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933122716   8 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYS 74
Cdd:PRK12561  305 AMLQMISHGLIAAALFFLTGVTYERTH-TLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVS 370
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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